Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS35940

Experiment: LB_noSalt with Chloride 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS35930 and QEN71_RS35935 are separated by 31 nucleotidesQEN71_RS35935 and QEN71_RS35940 are separated by 303 nucleotides QEN71_RS35930: QEN71_RS35930 - LysR family transcriptional regulator, at 1,442,179 to 1,443,123 _RS35930 QEN71_RS35935: QEN71_RS35935 - ureidoglycolate lyase, at 1,443,155 to 1,443,715 _RS35935 QEN71_RS35940: QEN71_RS35940 - DUF3455 domain-containing protein, at 1,444,019 to 1,444,477 _RS35940 Position (kb) 1444 1445Strain fitness (log2 ratio) -2 -1 0 1at 1443.146 kb on + strandat 1443.147 kb on - strandat 1443.241 kb on + strand, within QEN71_RS35935at 1443.602 kb on + strand, within QEN71_RS35935at 1443.602 kb on + strand, within QEN71_RS35935at 1443.602 kb on + strand, within QEN71_RS35935at 1443.602 kb on + strand, within QEN71_RS35935at 1443.603 kb on - strand, within QEN71_RS35935at 1443.761 kb on + strandat 1443.763 kb on + strandat 1443.763 kb on + strandat 1443.764 kb on - strandat 1443.832 kb on + strandat 1443.833 kb on - strandat 1443.999 kb on + strandat 1444.119 kb on + strand, within QEN71_RS35940at 1444.119 kb on + strand, within QEN71_RS35940at 1444.119 kb on + strand, within QEN71_RS35940at 1444.119 kb on + strand, within QEN71_RS35940at 1444.119 kb on + strand, within QEN71_RS35940at 1444.120 kb on - strand, within QEN71_RS35940at 1444.120 kb on - strand, within QEN71_RS35940at 1444.121 kb on + strand, within QEN71_RS35940at 1444.121 kb on + strand, within QEN71_RS35940at 1444.121 kb on + strand, within QEN71_RS35940at 1444.121 kb on + strand, within QEN71_RS35940at 1444.121 kb on + strand, within QEN71_RS35940at 1444.122 kb on - strand, within QEN71_RS35940at 1444.122 kb on - strand, within QEN71_RS35940at 1444.187 kb on + strand, within QEN71_RS35940at 1444.320 kb on + strand, within QEN71_RS35940at 1444.321 kb on - strand, within QEN71_RS35940at 1444.448 kb on + strandat 1444.465 kb on - strandat 1444.486 kb on + strandat 1444.489 kb on - strandat 1444.742 kb on + strandat 1444.795 kb on + strandat 1444.796 kb on - strandat 1444.796 kb on - strandat 1444.796 kb on - strandat 1444.844 kb on + strandat 1444.989 kb on - strandat 1445.008 kb on - strandat 1445.274 kb on + strandat 1445.360 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_noSalt with Chloride 200 mM
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1,443,146 + +0.2
1,443,147 - -0.9
1,443,241 + QEN71_RS35935 0.15 -0.4
1,443,602 + QEN71_RS35935 0.80 +0.7
1,443,602 + QEN71_RS35935 0.80 +0.1
1,443,602 + QEN71_RS35935 0.80 +0.1
1,443,602 + QEN71_RS35935 0.80 +0.3
1,443,603 - QEN71_RS35935 0.80 +0.4
1,443,761 + +0.2
1,443,763 + -2.0
1,443,763 + +0.2
1,443,764 - -1.5
1,443,832 + +0.6
1,443,833 - +0.1
1,443,999 + -0.9
1,444,119 + QEN71_RS35940 0.22 -1.6
1,444,119 + QEN71_RS35940 0.22 +0.8
1,444,119 + QEN71_RS35940 0.22 -0.9
1,444,119 + QEN71_RS35940 0.22 +0.9
1,444,119 + QEN71_RS35940 0.22 -0.2
1,444,120 - QEN71_RS35940 0.22 -1.0
1,444,120 - QEN71_RS35940 0.22 -1.1
1,444,121 + QEN71_RS35940 0.22 -2.4
1,444,121 + QEN71_RS35940 0.22 -0.9
1,444,121 + QEN71_RS35940 0.22 -0.2
1,444,121 + QEN71_RS35940 0.22 -0.6
1,444,121 + QEN71_RS35940 0.22 -0.7
1,444,122 - QEN71_RS35940 0.22 +0.1
1,444,122 - QEN71_RS35940 0.22 -0.5
1,444,187 + QEN71_RS35940 0.37 -0.4
1,444,320 + QEN71_RS35940 0.66 +0.3
1,444,321 - QEN71_RS35940 0.66 -0.0
1,444,448 + +0.4
1,444,465 - +0.4
1,444,486 + -1.6
1,444,489 - +0.1
1,444,742 + +0.6
1,444,795 + -0.4
1,444,796 - -0.4
1,444,796 - -0.5
1,444,796 - -0.7
1,444,844 + -0.3
1,444,989 - -0.2
1,445,008 - -0.7
1,445,274 + -0.9
1,445,360 - +0.1

Or see this region's nucleotide sequence