Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS34665

Experiment: LB_noSalt with Chloride 200 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntQEN71_RS34660 and QEN71_RS34665 are separated by 530 nucleotidesQEN71_RS34665 and QEN71_RS34670 are separated by 185 nucleotides QEN71_RS34660: QEN71_RS34660 - sterol desaturase family protein, at 1,092,336 to 1,093,526 _RS34660 QEN71_RS34665: QEN71_RS34665 - hypothetical protein, at 1,094,057 to 1,094,440 _RS34665 QEN71_RS34670: QEN71_RS34670 - hypothetical protein, at 1,094,626 to 1,095,330 _RS34670 Position (kb) 1094 1095Strain fitness (log2 ratio) -2 -1 0 1 2at 1093.501 kb on + strandat 1093.502 kb on - strandat 1093.636 kb on - strandat 1093.917 kb on - strandat 1094.024 kb on - strandat 1094.262 kb on - strand, within QEN71_RS34665at 1094.351 kb on + strand, within QEN71_RS34665at 1094.351 kb on + strand, within QEN71_RS34665at 1094.422 kb on + strandat 1094.478 kb on + strandat 1094.479 kb on - strandat 1094.561 kb on + strandat 1094.794 kb on + strand, within QEN71_RS34670at 1094.795 kb on - strand, within QEN71_RS34670at 1094.948 kb on + strand, within QEN71_RS34670at 1094.974 kb on + strand, within QEN71_RS34670at 1094.975 kb on - strand, within QEN71_RS34670at 1094.975 kb on - strand, within QEN71_RS34670at 1095.054 kb on - strand, within QEN71_RS34670at 1095.148 kb on + strand, within QEN71_RS34670at 1095.149 kb on - strand, within QEN71_RS34670at 1095.348 kb on + strandat 1095.349 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB_noSalt with Chloride 200 mM
remove
1,093,501 + -0.8
1,093,502 - -0.6
1,093,636 - +0.5
1,093,917 - -0.6
1,094,024 - -0.5
1,094,262 - QEN71_RS34665 0.53 -0.6
1,094,351 + QEN71_RS34665 0.77 -0.4
1,094,351 + QEN71_RS34665 0.77 -0.9
1,094,422 + -0.4
1,094,478 + -1.1
1,094,479 - -1.0
1,094,561 + +1.9
1,094,794 + QEN71_RS34670 0.24 -1.4
1,094,795 - QEN71_RS34670 0.24 -0.7
1,094,948 + QEN71_RS34670 0.46 +0.2
1,094,974 + QEN71_RS34670 0.49 -0.1
1,094,975 - QEN71_RS34670 0.50 +0.3
1,094,975 - QEN71_RS34670 0.50 -1.0
1,095,054 - QEN71_RS34670 0.61 -1.8
1,095,148 + QEN71_RS34670 0.74 +0.3
1,095,149 - QEN71_RS34670 0.74 +0.1
1,095,348 + +1.1
1,095,349 - -0.8

Or see this region's nucleotide sequence