Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS34240

Experiment: LB_noSalt with Chloride 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS34230 and QEN71_RS34235 are separated by 33 nucleotidesQEN71_RS34235 and QEN71_RS34240 overlap by 4 nucleotidesQEN71_RS34240 and QEN71_RS34245 are separated by 122 nucleotidesQEN71_RS34245 and QEN71_RS34250 are separated by 233 nucleotides QEN71_RS34230: QEN71_RS34230 - amino acid permease, at 999,081 to 1,000,475 _RS34230 QEN71_RS34235: QEN71_RS34235 - hypothetical protein, at 1,000,509 to 1,000,649 _RS34235 QEN71_RS34240: QEN71_RS34240 - hypothetical protein, at 1,000,646 to 1,001,032 _RS34240 QEN71_RS34245: QEN71_RS34245 - hypothetical protein, at 1,001,155 to 1,001,490 _RS34245 QEN71_RS34250: QEN71_RS34250 - DUF4148 domain-containing protein, at 1,001,724 to 1,002,047 _RS34250 Position (kb) 1000 1001 1002Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 999.650 kb on - strand, within QEN71_RS34230at 999.650 kb on - strand, within QEN71_RS34230at 999.651 kb on + strand, within QEN71_RS34230at 999.652 kb on - strand, within QEN71_RS34230at 999.707 kb on - strand, within QEN71_RS34230at 999.816 kb on + strand, within QEN71_RS34230at 999.817 kb on - strand, within QEN71_RS34230at 999.817 kb on - strand, within QEN71_RS34230at 999.826 kb on + strand, within QEN71_RS34230at 999.827 kb on - strand, within QEN71_RS34230at 999.829 kb on + strand, within QEN71_RS34230at 999.829 kb on + strand, within QEN71_RS34230at 999.829 kb on + strand, within QEN71_RS34230at 999.829 kb on + strand, within QEN71_RS34230at 999.829 kb on + strand, within QEN71_RS34230at 999.829 kb on + strand, within QEN71_RS34230at 999.830 kb on - strand, within QEN71_RS34230at 999.875 kb on - strand, within QEN71_RS34230at 1000.153 kb on + strand, within QEN71_RS34230at 1000.154 kb on - strand, within QEN71_RS34230at 1000.168 kb on + strand, within QEN71_RS34230at 1000.168 kb on + strand, within QEN71_RS34230at 1000.169 kb on - strand, within QEN71_RS34230at 1000.283 kb on + strand, within QEN71_RS34230at 1000.283 kb on + strand, within QEN71_RS34230at 1000.284 kb on - strand, within QEN71_RS34230at 1000.285 kb on + strand, within QEN71_RS34230at 1000.456 kb on - strandat 1000.510 kb on + strandat 1000.553 kb on - strand, within QEN71_RS34235at 1000.722 kb on + strand, within QEN71_RS34240at 1000.723 kb on - strand, within QEN71_RS34240at 1000.723 kb on - strand, within QEN71_RS34240at 1000.819 kb on - strand, within QEN71_RS34240at 1000.984 kb on + strand, within QEN71_RS34240at 1001.020 kb on - strandat 1001.020 kb on - strandat 1001.249 kb on + strand, within QEN71_RS34245at 1001.249 kb on + strand, within QEN71_RS34245at 1001.249 kb on + strand, within QEN71_RS34245at 1001.387 kb on + strand, within QEN71_RS34245at 1001.387 kb on + strand, within QEN71_RS34245at 1001.393 kb on + strand, within QEN71_RS34245at 1001.393 kb on + strand, within QEN71_RS34245at 1001.393 kb on + strand, within QEN71_RS34245at 1001.394 kb on - strand, within QEN71_RS34245at 1001.394 kb on - strand, within QEN71_RS34245at 1001.437 kb on - strand, within QEN71_RS34245at 1001.753 kb on - strandat 1001.753 kb on - strandat 1001.937 kb on + strand, within QEN71_RS34250at 1001.964 kb on + strand, within QEN71_RS34250at 1001.964 kb on + strand, within QEN71_RS34250at 1001.964 kb on + strand, within QEN71_RS34250at 1001.965 kb on - strand, within QEN71_RS34250at 1001.967 kb on + strand, within QEN71_RS34250at 1001.968 kb on - strand, within QEN71_RS34250

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_noSalt with Chloride 200 mM
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999,650 - QEN71_RS34230 0.41 +0.5
999,650 - QEN71_RS34230 0.41 -1.1
999,651 + QEN71_RS34230 0.41 +0.1
999,652 - QEN71_RS34230 0.41 +1.9
999,707 - QEN71_RS34230 0.45 -0.3
999,816 + QEN71_RS34230 0.53 +0.7
999,817 - QEN71_RS34230 0.53 -0.7
999,817 - QEN71_RS34230 0.53 -1.1
999,826 + QEN71_RS34230 0.53 -0.7
999,827 - QEN71_RS34230 0.53 -0.8
999,829 + QEN71_RS34230 0.54 -0.2
999,829 + QEN71_RS34230 0.54 -1.2
999,829 + QEN71_RS34230 0.54 -0.4
999,829 + QEN71_RS34230 0.54 +0.2
999,829 + QEN71_RS34230 0.54 -0.0
999,829 + QEN71_RS34230 0.54 -1.7
999,830 - QEN71_RS34230 0.54 -0.7
999,875 - QEN71_RS34230 0.57 -0.1
1,000,153 + QEN71_RS34230 0.77 -0.4
1,000,154 - QEN71_RS34230 0.77 +0.0
1,000,168 + QEN71_RS34230 0.78 -0.8
1,000,168 + QEN71_RS34230 0.78 +0.2
1,000,169 - QEN71_RS34230 0.78 +0.4
1,000,283 + QEN71_RS34230 0.86 +0.3
1,000,283 + QEN71_RS34230 0.86 -1.1
1,000,284 - QEN71_RS34230 0.86 +0.2
1,000,285 + QEN71_RS34230 0.86 -3.0
1,000,456 - -0.3
1,000,510 + -0.4
1,000,553 - QEN71_RS34235 0.31 +0.4
1,000,722 + QEN71_RS34240 0.20 -1.1
1,000,723 - QEN71_RS34240 0.20 -2.2
1,000,723 - QEN71_RS34240 0.20 -1.2
1,000,819 - QEN71_RS34240 0.45 -0.8
1,000,984 + QEN71_RS34240 0.87 -0.7
1,001,020 - -1.1
1,001,020 - +1.2
1,001,249 + QEN71_RS34245 0.28 -0.5
1,001,249 + QEN71_RS34245 0.28 +1.4
1,001,249 + QEN71_RS34245 0.28 +0.8
1,001,387 + QEN71_RS34245 0.69 +0.3
1,001,387 + QEN71_RS34245 0.69 -0.8
1,001,393 + QEN71_RS34245 0.71 -0.2
1,001,393 + QEN71_RS34245 0.71 -0.6
1,001,393 + QEN71_RS34245 0.71 -1.3
1,001,394 - QEN71_RS34245 0.71 -1.2
1,001,394 - QEN71_RS34245 0.71 +1.1
1,001,437 - QEN71_RS34245 0.84 +0.1
1,001,753 - +0.0
1,001,753 - -0.2
1,001,937 + QEN71_RS34250 0.66 +0.4
1,001,964 + QEN71_RS34250 0.74 -1.0
1,001,964 + QEN71_RS34250 0.74 +0.3
1,001,964 + QEN71_RS34250 0.74 -1.5
1,001,965 - QEN71_RS34250 0.74 -1.2
1,001,967 + QEN71_RS34250 0.75 -0.8
1,001,968 - QEN71_RS34250 0.75 -0.4

Or see this region's nucleotide sequence