Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS34010

Experiment: LB_noSalt with Chloride 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS34005 and QEN71_RS34010 are separated by 59 nucleotidesQEN71_RS34010 and QEN71_RS34015 are separated by 267 nucleotides QEN71_RS34005: QEN71_RS34005 - aminotransferase class V-fold PLP-dependent enzyme, at 946,345 to 947,610 _RS34005 QEN71_RS34010: QEN71_RS34010 - serine hydroxymethyltransferase, at 947,670 to 948,992 _RS34010 QEN71_RS34015: QEN71_RS34015 - LysR family transcriptional regulator, at 949,260 to 950,183 _RS34015 Position (kb) 947 948 949Strain fitness (log2 ratio) -2 -1 0 1at 946.766 kb on + strand, within QEN71_RS34005at 946.766 kb on + strand, within QEN71_RS34005at 946.767 kb on - strand, within QEN71_RS34005at 946.767 kb on - strand, within QEN71_RS34005at 947.439 kb on - strand, within QEN71_RS34005at 947.660 kb on - strandat 948.326 kb on - strand, within QEN71_RS34010at 948.353 kb on - strand, within QEN71_RS34010at 948.380 kb on - strand, within QEN71_RS34010at 948.526 kb on + strand, within QEN71_RS34010at 948.645 kb on + strand, within QEN71_RS34010at 949.459 kb on + strand, within QEN71_RS34015at 949.459 kb on + strand, within QEN71_RS34015at 949.460 kb on - strand, within QEN71_RS34015at 949.460 kb on - strand, within QEN71_RS34015

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_noSalt with Chloride 200 mM
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946,766 + QEN71_RS34005 0.33 +1.0
946,766 + QEN71_RS34005 0.33 -1.8
946,767 - QEN71_RS34005 0.33 -2.2
946,767 - QEN71_RS34005 0.33 +0.1
947,439 - QEN71_RS34005 0.86 -0.6
947,660 - +0.9
948,326 - QEN71_RS34010 0.50 +0.2
948,353 - QEN71_RS34010 0.52 -2.3
948,380 - QEN71_RS34010 0.54 -0.5
948,526 + QEN71_RS34010 0.65 -1.4
948,645 + QEN71_RS34010 0.74 +0.1
949,459 + QEN71_RS34015 0.22 -0.1
949,459 + QEN71_RS34015 0.22 -1.5
949,460 - QEN71_RS34015 0.22 -0.8
949,460 - QEN71_RS34015 0.22 +0.2

Or see this region's nucleotide sequence