Experiment: LB_noSalt with Chloride 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS33640 and QEN71_RS33645 are separated by 2 nucleotides QEN71_RS33645 and QEN71_RS33650 are separated by 10 nucleotides QEN71_RS33650 and QEN71_RS33655 are separated by 185 nucleotides
QEN71_RS33640: QEN71_RS33640 - amidohydrolase family protein, at 864,898 to 865,923
_RS33640
QEN71_RS33645: QEN71_RS33645 - 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase, at 865,926 to 866,609
_RS33645
QEN71_RS33650: QEN71_RS33650 - substrate-binding domain-containing protein, at 866,620 to 867,327
_RS33650
QEN71_RS33655: QEN71_RS33655 - hypothetical protein, at 867,513 to 868,595
_RS33655
Position (kb) 866
867
868 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 865.681 kb on + strand, within QEN71_RS33640 at 865.681 kb on + strand, within QEN71_RS33640 at 865.793 kb on - strand, within QEN71_RS33640 at 865.850 kb on - strand at 865.850 kb on - strand at 865.859 kb on - strand at 865.859 kb on - strand at 866.598 kb on + strand at 866.598 kb on + strand at 866.788 kb on + strand, within QEN71_RS33650 at 866.789 kb on - strand, within QEN71_RS33650 at 867.001 kb on + strand, within QEN71_RS33650 at 867.001 kb on + strand, within QEN71_RS33650 at 867.002 kb on - strand, within QEN71_RS33650 at 867.392 kb on + strand at 867.537 kb on + strand at 867.537 kb on + strand at 867.538 kb on - strand at 867.692 kb on + strand, within QEN71_RS33655 at 867.692 kb on + strand, within QEN71_RS33655 at 867.692 kb on + strand, within QEN71_RS33655 at 867.693 kb on - strand, within QEN71_RS33655 at 867.693 kb on - strand, within QEN71_RS33655 at 867.693 kb on - strand, within QEN71_RS33655 at 867.914 kb on + strand, within QEN71_RS33655 at 867.953 kb on - strand, within QEN71_RS33655 at 867.972 kb on + strand, within QEN71_RS33655 at 868.061 kb on + strand, within QEN71_RS33655
Per-strain Table
Position Strand Gene LocusTag Fraction LB_noSalt with Chloride 200 mM remove 865,681 + QEN71_RS33640 0.76 +1.5 865,681 + QEN71_RS33640 0.76 -1.2 865,793 - QEN71_RS33640 0.87 -0.5 865,850 - +0.1 865,850 - -0.8 865,859 - -0.4 865,859 - -0.4 866,598 + +0.1 866,598 + +0.3 866,788 + QEN71_RS33650 0.24 +0.6 866,789 - QEN71_RS33650 0.24 -2.7 867,001 + QEN71_RS33650 0.54 +0.2 867,001 + QEN71_RS33650 0.54 -0.3 867,002 - QEN71_RS33650 0.54 -2.7 867,392 + +0.5 867,537 + -0.5 867,537 + -0.5 867,538 - -1.8 867,692 + QEN71_RS33655 0.17 -0.4 867,692 + QEN71_RS33655 0.17 +0.8 867,692 + QEN71_RS33655 0.17 -0.5 867,693 - QEN71_RS33655 0.17 -0.0 867,693 - QEN71_RS33655 0.17 +0.0 867,693 - QEN71_RS33655 0.17 -1.0 867,914 + QEN71_RS33655 0.37 +0.1 867,953 - QEN71_RS33655 0.41 -0.5 867,972 + QEN71_RS33655 0.42 +2.9 868,061 + QEN71_RS33655 0.51 +0.1
Or see this region's nucleotide sequence