Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS32920

Experiment: LB_noSalt with Chloride 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS32910 and QEN71_RS32915 are separated by 41 nucleotidesQEN71_RS32915 and QEN71_RS32920 are separated by 32 nucleotidesQEN71_RS32920 and QEN71_RS32925 are separated by 74 nucleotides QEN71_RS32910: QEN71_RS32910 - DUF2182 domain-containing protein, at 714,111 to 714,920 _RS32910 QEN71_RS32915: QEN71_RS32915 - SDR family oxidoreductase, at 714,962 to 715,732 _RS32915 QEN71_RS32920: QEN71_RS32920 - zinc-binding alcohol dehydrogenase family protein, at 715,765 to 716,736 _RS32920 QEN71_RS32925: QEN71_RS32925 - alpha/beta hydrolase, at 716,811 to 717,665 _RS32925 Position (kb) 715 716 717Strain fitness (log2 ratio) -2 -1 0 1at 715.158 kb on + strand, within QEN71_RS32915at 715.159 kb on - strand, within QEN71_RS32915at 715.159 kb on - strand, within QEN71_RS32915at 715.159 kb on - strand, within QEN71_RS32915at 715.290 kb on + strand, within QEN71_RS32915at 715.719 kb on - strandat 715.967 kb on + strand, within QEN71_RS32920at 715.968 kb on - strand, within QEN71_RS32920at 715.977 kb on + strand, within QEN71_RS32920at 715.978 kb on - strand, within QEN71_RS32920at 716.686 kb on - strandat 716.687 kb on + strandat 716.688 kb on - strandat 716.748 kb on + strandat 716.754 kb on - strandat 716.754 kb on - strandat 716.754 kb on - strandat 716.992 kb on + strand, within QEN71_RS32925at 717.004 kb on + strand, within QEN71_RS32925at 717.005 kb on - strand, within QEN71_RS32925at 717.005 kb on - strand, within QEN71_RS32925at 717.023 kb on - strand, within QEN71_RS32925at 717.066 kb on + strand, within QEN71_RS32925at 717.066 kb on + strand, within QEN71_RS32925at 717.067 kb on - strand, within QEN71_RS32925at 717.094 kb on + strand, within QEN71_RS32925at 717.094 kb on + strand, within QEN71_RS32925at 717.095 kb on - strand, within QEN71_RS32925at 717.095 kb on - strand, within QEN71_RS32925at 717.095 kb on - strand, within QEN71_RS32925at 717.157 kb on + strand, within QEN71_RS32925at 717.157 kb on + strand, within QEN71_RS32925at 717.158 kb on - strand, within QEN71_RS32925at 717.232 kb on + strand, within QEN71_RS32925at 717.274 kb on + strand, within QEN71_RS32925at 717.275 kb on - strand, within QEN71_RS32925at 717.367 kb on + strand, within QEN71_RS32925at 717.367 kb on + strand, within QEN71_RS32925at 717.368 kb on - strand, within QEN71_RS32925at 717.437 kb on + strand, within QEN71_RS32925at 717.437 kb on + strand, within QEN71_RS32925at 717.437 kb on + strand, within QEN71_RS32925at 717.437 kb on + strand, within QEN71_RS32925at 717.437 kb on + strand, within QEN71_RS32925at 717.437 kb on + strand, within QEN71_RS32925at 717.437 kb on + strand, within QEN71_RS32925at 717.437 kb on + strand, within QEN71_RS32925at 717.438 kb on - strand, within QEN71_RS32925at 717.438 kb on - strand, within QEN71_RS32925at 717.439 kb on + strand, within QEN71_RS32925at 717.545 kb on + strand, within QEN71_RS32925at 717.545 kb on + strand, within QEN71_RS32925at 717.545 kb on + strand, within QEN71_RS32925at 717.545 kb on + strand, within QEN71_RS32925at 717.546 kb on - strand, within QEN71_RS32925at 717.613 kb on + strandat 717.613 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_noSalt with Chloride 200 mM
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715,158 + QEN71_RS32915 0.25 +0.2
715,159 - QEN71_RS32915 0.26 -0.2
715,159 - QEN71_RS32915 0.26 +0.1
715,159 - QEN71_RS32915 0.26 +0.4
715,290 + QEN71_RS32915 0.43 -1.3
715,719 - -0.5
715,967 + QEN71_RS32920 0.21 -2.5
715,968 - QEN71_RS32920 0.21 -0.5
715,977 + QEN71_RS32920 0.22 -1.8
715,978 - QEN71_RS32920 0.22 -0.1
716,686 - +1.0
716,687 + +0.6
716,688 - +0.2
716,748 + -0.3
716,754 - -0.8
716,754 - -1.0
716,754 - -1.0
716,992 + QEN71_RS32925 0.21 +0.1
717,004 + QEN71_RS32925 0.23 -1.1
717,005 - QEN71_RS32925 0.23 -1.1
717,005 - QEN71_RS32925 0.23 -1.0
717,023 - QEN71_RS32925 0.25 +0.0
717,066 + QEN71_RS32925 0.30 -0.3
717,066 + QEN71_RS32925 0.30 +1.1
717,067 - QEN71_RS32925 0.30 +0.2
717,094 + QEN71_RS32925 0.33 +0.6
717,094 + QEN71_RS32925 0.33 -0.5
717,095 - QEN71_RS32925 0.33 -0.2
717,095 - QEN71_RS32925 0.33 -0.6
717,095 - QEN71_RS32925 0.33 +0.6
717,157 + QEN71_RS32925 0.40 -0.9
717,157 + QEN71_RS32925 0.40 -1.9
717,158 - QEN71_RS32925 0.41 +0.3
717,232 + QEN71_RS32925 0.49 +0.1
717,274 + QEN71_RS32925 0.54 +0.1
717,275 - QEN71_RS32925 0.54 +0.1
717,367 + QEN71_RS32925 0.65 -0.2
717,367 + QEN71_RS32925 0.65 -0.6
717,368 - QEN71_RS32925 0.65 -0.3
717,437 + QEN71_RS32925 0.73 -1.1
717,437 + QEN71_RS32925 0.73 +0.3
717,437 + QEN71_RS32925 0.73 +0.6
717,437 + QEN71_RS32925 0.73 -2.0
717,437 + QEN71_RS32925 0.73 -0.8
717,437 + QEN71_RS32925 0.73 -0.4
717,437 + QEN71_RS32925 0.73 +0.3
717,437 + QEN71_RS32925 0.73 -0.6
717,438 - QEN71_RS32925 0.73 +1.3
717,438 - QEN71_RS32925 0.73 +0.4
717,439 + QEN71_RS32925 0.73 -0.4
717,545 + QEN71_RS32925 0.86 +0.7
717,545 + QEN71_RS32925 0.86 +1.4
717,545 + QEN71_RS32925 0.86 +0.5
717,545 + QEN71_RS32925 0.86 -0.2
717,546 - QEN71_RS32925 0.86 +0.4
717,613 + -0.9
717,613 + +0.4

Or see this region's nucleotide sequence