Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS31915

Experiment: LB_noSalt with Chloride 200 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntQEN71_RS31910 and QEN71_RS31915 overlap by 4 nucleotidesQEN71_RS31915 and QEN71_RS31920 overlap by 22 nucleotides QEN71_RS31910: QEN71_RS31910 - ABC transporter ATP-binding protein, at 511,500 to 513,329 _RS31910 QEN71_RS31915: QEN71_RS31915 - (2Fe-2S)-binding protein, at 513,326 to 513,646 _RS31915 QEN71_RS31920: QEN71_RS31920 - NAD(P)/FAD-dependent oxidoreductase, at 513,625 to 515,064 _RS31920 Position (kb) 513 514Strain fitness (log2 ratio) -2 -1 0 1 2at 512.390 kb on - strand, within QEN71_RS31910at 512.578 kb on - strand, within QEN71_RS31910at 512.670 kb on + strand, within QEN71_RS31910at 512.929 kb on - strand, within QEN71_RS31910at 512.929 kb on - strand, within QEN71_RS31910at 512.992 kb on - strand, within QEN71_RS31910at 512.992 kb on - strand, within QEN71_RS31910at 513.054 kb on + strand, within QEN71_RS31910at 513.624 kb on + strandat 513.625 kb on - strandat 513.769 kb on + strand, within QEN71_RS31920at 513.814 kb on + strand, within QEN71_RS31920at 513.883 kb on + strand, within QEN71_RS31920at 513.936 kb on - strand, within QEN71_RS31920at 514.129 kb on + strand, within QEN71_RS31920at 514.130 kb on - strand, within QEN71_RS31920at 514.130 kb on - strand, within QEN71_RS31920at 514.544 kb on - strand, within QEN71_RS31920at 514.544 kb on - strand, within QEN71_RS31920

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB_noSalt with Chloride 200 mM
remove
512,390 - QEN71_RS31910 0.49 -0.7
512,578 - QEN71_RS31910 0.59 -0.2
512,670 + QEN71_RS31910 0.64 -2.5
512,929 - QEN71_RS31910 0.78 +0.1
512,929 - QEN71_RS31910 0.78 -0.4
512,992 - QEN71_RS31910 0.82 +2.1
512,992 - QEN71_RS31910 0.82 -0.4
513,054 + QEN71_RS31910 0.85 -1.9
513,624 + -1.2
513,625 - +0.3
513,769 + QEN71_RS31920 0.10 -0.6
513,814 + QEN71_RS31920 0.13 +1.3
513,883 + QEN71_RS31920 0.18 +0.7
513,936 - QEN71_RS31920 0.22 +0.0
514,129 + QEN71_RS31920 0.35 -1.9
514,130 - QEN71_RS31920 0.35 -0.2
514,130 - QEN71_RS31920 0.35 -0.1
514,544 - QEN71_RS31920 0.64 +0.9
514,544 - QEN71_RS31920 0.64 +1.9

Or see this region's nucleotide sequence