Experiment: LB_noSalt with Chloride 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS30870 and QEN71_RS30875 are separated by 35 nucleotides QEN71_RS30875 and QEN71_RS30880 are separated by 26 nucleotides QEN71_RS30880 and QEN71_RS30885 are separated by 2 nucleotides
QEN71_RS30870: QEN71_RS30870 - hypothetical protein, at 277,717 to 278,214
_RS30870
QEN71_RS30875: QEN71_RS30875 - outer membrane lipoprotein-sorting protein, at 278,250 to 279,065
_RS30875
QEN71_RS30880: QEN71_RS30880 - hypothetical protein, at 279,092 to 279,913
_RS30880
QEN71_RS30885: QEN71_RS30885 - c-type cytochrome, at 279,916 to 281,544
_RS30885
Position (kb) 279
280 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 278.114 kb on - strand, within QEN71_RS30870 at 278.234 kb on + strand at 278.234 kb on + strand at 278.235 kb on - strand at 278.235 kb on - strand at 278.235 kb on - strand at 278.607 kb on + strand, within QEN71_RS30875 at 278.670 kb on + strand, within QEN71_RS30875 at 278.716 kb on + strand, within QEN71_RS30875 at 278.717 kb on - strand, within QEN71_RS30875 at 278.717 kb on - strand, within QEN71_RS30875 at 278.776 kb on + strand, within QEN71_RS30875 at 278.777 kb on - strand, within QEN71_RS30875 at 278.777 kb on - strand, within QEN71_RS30875 at 278.777 kb on - strand, within QEN71_RS30875 at 278.850 kb on - strand, within QEN71_RS30875 at 278.862 kb on + strand, within QEN71_RS30875 at 278.862 kb on + strand, within QEN71_RS30875 at 278.991 kb on - strand at 278.991 kb on - strand at 279.064 kb on - strand at 279.175 kb on + strand, within QEN71_RS30880 at 279.176 kb on - strand, within QEN71_RS30880 at 279.176 kb on - strand, within QEN71_RS30880 at 279.440 kb on + strand, within QEN71_RS30880 at 279.912 kb on - strand at 280.192 kb on + strand, within QEN71_RS30885 at 280.394 kb on - strand, within QEN71_RS30885 at 280.519 kb on + strand, within QEN71_RS30885 at 280.519 kb on + strand, within QEN71_RS30885 at 280.520 kb on - strand, within QEN71_RS30885 at 280.645 kb on - strand, within QEN71_RS30885 at 280.662 kb on - strand, within QEN71_RS30885 at 280.669 kb on + strand, within QEN71_RS30885 at 280.669 kb on + strand, within QEN71_RS30885 at 280.822 kb on + strand, within QEN71_RS30885 at 280.823 kb on - strand, within QEN71_RS30885 at 280.871 kb on + strand, within QEN71_RS30885 at 280.871 kb on + strand, within QEN71_RS30885 at 280.913 kb on - strand, within QEN71_RS30885 at 280.913 kb on - strand, within QEN71_RS30885
Per-strain Table
Position Strand Gene LocusTag Fraction LB_noSalt with Chloride 200 mM remove 278,114 - QEN71_RS30870 0.80 -1.8 278,234 + -0.7 278,234 + -1.0 278,235 - -0.9 278,235 - -0.4 278,235 - +2.7 278,607 + QEN71_RS30875 0.44 +0.7 278,670 + QEN71_RS30875 0.51 -0.5 278,716 + QEN71_RS30875 0.57 +0.1 278,717 - QEN71_RS30875 0.57 -0.1 278,717 - QEN71_RS30875 0.57 -0.4 278,776 + QEN71_RS30875 0.64 -0.8 278,777 - QEN71_RS30875 0.65 +0.8 278,777 - QEN71_RS30875 0.65 -1.5 278,777 - QEN71_RS30875 0.65 -0.3 278,850 - QEN71_RS30875 0.74 -1.7 278,862 + QEN71_RS30875 0.75 -1.5 278,862 + QEN71_RS30875 0.75 -0.7 278,991 - +1.1 278,991 - -1.1 279,064 - -0.6 279,175 + QEN71_RS30880 0.10 -1.9 279,176 - QEN71_RS30880 0.10 -0.6 279,176 - QEN71_RS30880 0.10 -0.9 279,440 + QEN71_RS30880 0.42 -0.7 279,912 - -1.1 280,192 + QEN71_RS30885 0.17 -0.3 280,394 - QEN71_RS30885 0.29 +0.2 280,519 + QEN71_RS30885 0.37 -0.1 280,519 + QEN71_RS30885 0.37 -2.2 280,520 - QEN71_RS30885 0.37 -0.9 280,645 - QEN71_RS30885 0.45 -0.6 280,662 - QEN71_RS30885 0.46 -0.9 280,669 + QEN71_RS30885 0.46 -1.8 280,669 + QEN71_RS30885 0.46 -0.3 280,822 + QEN71_RS30885 0.56 -0.9 280,823 - QEN71_RS30885 0.56 -3.0 280,871 + QEN71_RS30885 0.59 -2.0 280,871 + QEN71_RS30885 0.59 -2.1 280,913 - QEN71_RS30885 0.61 +0.2 280,913 - QEN71_RS30885 0.61 +0.4
Or see this region's nucleotide sequence