Experiment: LB_noSalt with Chloride 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS29900 and QEN71_RS29905 overlap by 4 nucleotides QEN71_RS29905 and QEN71_RS29910 are separated by 346 nucleotides QEN71_RS29910 and QEN71_RS29915 are separated by 203 nucleotides
QEN71_RS29900: QEN71_RS29900 - glycine zipper family protein, at 53,847 to 54,776
_RS29900
QEN71_RS29905: QEN71_RS29905 - PAAR domain-containing protein, at 54,773 to 55,324
_RS29905
QEN71_RS29910: QEN71_RS29910 - hypothetical protein, at 55,671 to 56,195
_RS29910
QEN71_RS29915: QEN71_RS29915 - DUF899 domain-containing protein, at 56,399 to 57,184
_RS29915
Position (kb) 55
56
57 Strain fitness (log2 ratio) -2
-1
0
1 at 54.760 kb on + strand at 54.761 kb on - strand at 54.766 kb on + strand at 54.766 kb on + strand at 54.767 kb on - strand at 54.767 kb on - strand at 54.841 kb on - strand, within QEN71_RS29905 at 54.841 kb on - strand, within QEN71_RS29905 at 54.882 kb on + strand, within QEN71_RS29905 at 54.901 kb on + strand, within QEN71_RS29905 at 54.901 kb on + strand, within QEN71_RS29905 at 55.112 kb on - strand, within QEN71_RS29905 at 55.142 kb on - strand, within QEN71_RS29905 at 55.229 kb on + strand, within QEN71_RS29905 at 55.271 kb on + strand at 55.326 kb on + strand at 55.497 kb on + strand at 55.544 kb on + strand at 55.609 kb on - strand at 55.729 kb on - strand, within QEN71_RS29910 at 56.073 kb on + strand, within QEN71_RS29910 at 56.140 kb on - strand, within QEN71_RS29910 at 56.194 kb on - strand at 56.284 kb on - strand at 56.581 kb on + strand, within QEN71_RS29915 at 56.582 kb on - strand, within QEN71_RS29915 at 56.588 kb on + strand, within QEN71_RS29915 at 56.588 kb on + strand, within QEN71_RS29915 at 56.588 kb on + strand, within QEN71_RS29915 at 56.686 kb on - strand, within QEN71_RS29915 at 56.919 kb on - strand, within QEN71_RS29915 at 56.948 kb on + strand, within QEN71_RS29915 at 56.948 kb on + strand, within QEN71_RS29915 at 56.948 kb on + strand, within QEN71_RS29915 at 56.948 kb on + strand, within QEN71_RS29915 at 56.949 kb on - strand, within QEN71_RS29915 at 56.949 kb on - strand, within QEN71_RS29915 at 56.996 kb on + strand, within QEN71_RS29915 at 57.054 kb on - strand, within QEN71_RS29915 at 57.072 kb on - strand, within QEN71_RS29915 at 57.072 kb on - strand, within QEN71_RS29915 at 57.098 kb on + strand, within QEN71_RS29915 at 57.098 kb on + strand, within QEN71_RS29915 at 57.098 kb on + strand, within QEN71_RS29915 at 57.099 kb on - strand, within QEN71_RS29915 at 57.099 kb on - strand, within QEN71_RS29915
Per-strain Table
Position Strand Gene LocusTag Fraction LB_noSalt with Chloride 200 mM remove 54,760 + -1.7 54,761 - -0.4 54,766 + -0.1 54,766 + +0.4 54,767 - +0.6 54,767 - -2.3 54,841 - QEN71_RS29905 0.12 +0.2 54,841 - QEN71_RS29905 0.12 -0.8 54,882 + QEN71_RS29905 0.20 -0.1 54,901 + QEN71_RS29905 0.23 +0.0 54,901 + QEN71_RS29905 0.23 +1.2 55,112 - QEN71_RS29905 0.61 -0.6 55,142 - QEN71_RS29905 0.67 +0.6 55,229 + QEN71_RS29905 0.83 +0.9 55,271 + +0.0 55,326 + -0.6 55,497 + +0.5 55,544 + +1.1 55,609 - -0.6 55,729 - QEN71_RS29910 0.11 -0.9 56,073 + QEN71_RS29910 0.77 -1.0 56,140 - QEN71_RS29910 0.89 -1.0 56,194 - -0.6 56,284 - +0.0 56,581 + QEN71_RS29915 0.23 +0.6 56,582 - QEN71_RS29915 0.23 -0.2 56,588 + QEN71_RS29915 0.24 +0.9 56,588 + QEN71_RS29915 0.24 +0.2 56,588 + QEN71_RS29915 0.24 -1.0 56,686 - QEN71_RS29915 0.37 +0.2 56,919 - QEN71_RS29915 0.66 -0.6 56,948 + QEN71_RS29915 0.70 +0.6 56,948 + QEN71_RS29915 0.70 +0.3 56,948 + QEN71_RS29915 0.70 -0.4 56,948 + QEN71_RS29915 0.70 -0.3 56,949 - QEN71_RS29915 0.70 -1.6 56,949 - QEN71_RS29915 0.70 -0.4 56,996 + QEN71_RS29915 0.76 +1.1 57,054 - QEN71_RS29915 0.83 +0.4 57,072 - QEN71_RS29915 0.86 -0.1 57,072 - QEN71_RS29915 0.86 +0.2 57,098 + QEN71_RS29915 0.89 +1.7 57,098 + QEN71_RS29915 0.89 -0.4 57,098 + QEN71_RS29915 0.89 -1.5 57,099 - QEN71_RS29915 0.89 +0.6 57,099 - QEN71_RS29915 0.89 -0.8
Or see this region's nucleotide sequence