Experiment: LB_noSalt with Chloride 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS26865 and QEN71_RS26870 are separated by 254 nucleotides QEN71_RS26870 and QEN71_RS26875 overlap by 4 nucleotides QEN71_RS26875 and QEN71_RS26880 overlap by 1 nucleotides QEN71_RS26880 and QEN71_RS26885 are separated by 89 nucleotides
QEN71_RS26865: QEN71_RS26865 - hypothetical protein, at 5,992,342 to 5,992,791
_RS26865
QEN71_RS26870: QEN71_RS26870 - amino acid ABC transporter ATP-binding protein, at 5,993,046 to 5,993,771
_RS26870
QEN71_RS26875: QEN71_RS26875 - glutamate/aspartate ABC transporter permease GltK, at 5,993,768 to 5,994,445
_RS26875
QEN71_RS26880: QEN71_RS26880 - amino acid ABC transporter permease, at 5,994,445 to 5,995,185
_RS26880
QEN71_RS26885: QEN71_RS26885 - glutamate/aspartate ABC transporter substrate-binding protein, at 5,995,275 to 5,996,168
_RS26885
Position (kb) 5993
5994
5995 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5992.867 kb on + strand at 5992.867 kb on + strand at 5992.867 kb on + strand at 5992.867 kb on + strand at 5992.881 kb on + strand at 5992.923 kb on - strand at 5992.956 kb on + strand at 5992.956 kb on + strand at 5992.956 kb on + strand at 5992.956 kb on + strand at 5992.956 kb on + strand at 5992.957 kb on - strand at 5992.957 kb on - strand at 5992.957 kb on - strand at 5992.957 kb on - strand at 5992.957 kb on - strand at 5993.041 kb on + strand at 5993.041 kb on + strand at 5993.042 kb on - strand at 5993.042 kb on - strand at 5993.042 kb on - strand at 5993.295 kb on + strand, within QEN71_RS26870 at 5993.296 kb on - strand, within QEN71_RS26870 at 5993.296 kb on - strand, within QEN71_RS26870 at 5993.296 kb on - strand, within QEN71_RS26870 at 5993.296 kb on - strand, within QEN71_RS26870 at 5993.374 kb on + strand, within QEN71_RS26870 at 5993.741 kb on - strand at 5993.762 kb on + strand at 5993.762 kb on + strand at 5993.762 kb on + strand at 5993.763 kb on - strand at 5993.763 kb on - strand at 5993.763 kb on - strand at 5993.832 kb on + strand at 5993.832 kb on + strand at 5993.833 kb on - strand at 5993.833 kb on - strand at 5993.833 kb on - strand at 5993.833 kb on - strand at 5993.852 kb on + strand, within QEN71_RS26875 at 5993.852 kb on + strand, within QEN71_RS26875 at 5993.853 kb on - strand, within QEN71_RS26875 at 5993.869 kb on + strand, within QEN71_RS26875 at 5993.869 kb on + strand, within QEN71_RS26875 at 5993.870 kb on - strand, within QEN71_RS26875 at 5993.887 kb on + strand, within QEN71_RS26875 at 5993.888 kb on - strand, within QEN71_RS26875 at 5993.888 kb on - strand, within QEN71_RS26875 at 5993.888 kb on - strand, within QEN71_RS26875 at 5993.928 kb on + strand, within QEN71_RS26875 at 5993.929 kb on - strand, within QEN71_RS26875 at 5993.929 kb on - strand, within QEN71_RS26875 at 5993.929 kb on - strand, within QEN71_RS26875 at 5993.941 kb on + strand, within QEN71_RS26875 at 5994.033 kb on + strand, within QEN71_RS26875 at 5994.033 kb on + strand, within QEN71_RS26875 at 5994.033 kb on + strand, within QEN71_RS26875 at 5994.034 kb on - strand, within QEN71_RS26875 at 5994.111 kb on + strand, within QEN71_RS26875 at 5994.111 kb on + strand, within QEN71_RS26875 at 5994.111 kb on + strand, within QEN71_RS26875 at 5994.112 kb on - strand, within QEN71_RS26875 at 5994.112 kb on - strand, within QEN71_RS26875 at 5994.112 kb on - strand, within QEN71_RS26875 at 5994.114 kb on + strand, within QEN71_RS26875 at 5994.114 kb on + strand, within QEN71_RS26875 at 5994.114 kb on + strand, within QEN71_RS26875 at 5994.114 kb on + strand, within QEN71_RS26875 at 5994.115 kb on - strand, within QEN71_RS26875 at 5994.115 kb on - strand, within QEN71_RS26875 at 5994.270 kb on + strand, within QEN71_RS26875 at 5994.270 kb on + strand, within QEN71_RS26875 at 5994.270 kb on + strand, within QEN71_RS26875 at 5994.270 kb on + strand, within QEN71_RS26875 at 5994.270 kb on + strand, within QEN71_RS26875 at 5994.270 kb on + strand, within QEN71_RS26875 at 5994.270 kb on + strand, within QEN71_RS26875 at 5994.270 kb on + strand, within QEN71_RS26875 at 5994.271 kb on - strand, within QEN71_RS26875 at 5994.271 kb on - strand, within QEN71_RS26875 at 5994.271 kb on - strand, within QEN71_RS26875 at 5994.271 kb on - strand, within QEN71_RS26875 at 5994.271 kb on - strand, within QEN71_RS26875 at 5994.461 kb on + strand at 5994.461 kb on + strand at 5994.461 kb on + strand at 5994.461 kb on + strand at 5994.461 kb on + strand at 5994.461 kb on + strand at 5994.461 kb on + strand at 5994.461 kb on + strand at 5994.461 kb on + strand at 5994.462 kb on - strand at 5994.462 kb on - strand at 5994.462 kb on - strand at 5994.530 kb on + strand, within QEN71_RS26880 at 5994.530 kb on + strand, within QEN71_RS26880 at 5994.530 kb on + strand, within QEN71_RS26880 at 5994.531 kb on - strand, within QEN71_RS26880 at 5994.531 kb on - strand, within QEN71_RS26880 at 5994.531 kb on - strand, within QEN71_RS26880 at 5994.560 kb on + strand, within QEN71_RS26880 at 5994.560 kb on + strand, within QEN71_RS26880 at 5994.560 kb on + strand, within QEN71_RS26880 at 5994.560 kb on + strand, within QEN71_RS26880 at 5994.560 kb on + strand, within QEN71_RS26880 at 5994.560 kb on + strand, within QEN71_RS26880 at 5994.560 kb on + strand, within QEN71_RS26880 at 5994.561 kb on - strand, within QEN71_RS26880 at 5994.561 kb on - strand, within QEN71_RS26880 at 5994.561 kb on - strand, within QEN71_RS26880 at 5994.561 kb on - strand, within QEN71_RS26880 at 5994.561 kb on - strand, within QEN71_RS26880 at 5994.561 kb on - strand, within QEN71_RS26880 at 5994.561 kb on - strand, within QEN71_RS26880 at 5994.561 kb on - strand, within QEN71_RS26880 at 5994.561 kb on - strand, within QEN71_RS26880 at 5994.561 kb on - strand, within QEN71_RS26880 at 5994.575 kb on + strand, within QEN71_RS26880 at 5994.576 kb on - strand, within QEN71_RS26880 at 5994.576 kb on - strand, within QEN71_RS26880 at 5994.576 kb on - strand, within QEN71_RS26880 at 5994.713 kb on + strand, within QEN71_RS26880 at 5994.713 kb on + strand, within QEN71_RS26880 at 5994.714 kb on - strand, within QEN71_RS26880 at 5994.714 kb on - strand, within QEN71_RS26880 at 5994.714 kb on - strand, within QEN71_RS26880 at 5994.719 kb on + strand, within QEN71_RS26880 at 5994.719 kb on + strand, within QEN71_RS26880 at 5994.719 kb on + strand, within QEN71_RS26880 at 5994.720 kb on - strand, within QEN71_RS26880 at 5994.720 kb on - strand, within QEN71_RS26880 at 5994.720 kb on - strand, within QEN71_RS26880 at 5994.720 kb on - strand, within QEN71_RS26880 at 5994.720 kb on - strand, within QEN71_RS26880 at 5994.891 kb on + strand, within QEN71_RS26880 at 5994.891 kb on + strand, within QEN71_RS26880 at 5994.891 kb on + strand, within QEN71_RS26880 at 5994.891 kb on + strand, within QEN71_RS26880 at 5994.892 kb on - strand, within QEN71_RS26880 at 5994.892 kb on - strand, within QEN71_RS26880 at 5994.892 kb on - strand, within QEN71_RS26880 at 5994.892 kb on - strand, within QEN71_RS26880 at 5994.892 kb on - strand, within QEN71_RS26880 at 5994.892 kb on - strand, within QEN71_RS26880 at 5994.892 kb on - strand, within QEN71_RS26880 at 5994.929 kb on + strand, within QEN71_RS26880 at 5994.930 kb on - strand, within QEN71_RS26880 at 5994.930 kb on - strand, within QEN71_RS26880 at 5994.964 kb on - strand, within QEN71_RS26880 at 5994.980 kb on + strand, within QEN71_RS26880 at 5994.981 kb on - strand, within QEN71_RS26880 at 5994.981 kb on - strand, within QEN71_RS26880 at 5994.981 kb on - strand, within QEN71_RS26880 at 5995.121 kb on + strand at 5995.121 kb on + strand at 5995.121 kb on + strand at 5995.121 kb on + strand at 5995.121 kb on + strand at 5995.121 kb on + strand at 5995.121 kb on + strand at 5995.122 kb on - strand at 5995.122 kb on - strand at 5995.122 kb on - strand at 5995.122 kb on - strand at 5995.122 kb on - strand at 5995.122 kb on - strand at 5995.153 kb on + strand at 5995.153 kb on + strand at 5995.153 kb on + strand at 5995.154 kb on - strand at 5995.178 kb on + strand at 5995.178 kb on + strand at 5995.178 kb on + strand at 5995.179 kb on - strand at 5995.179 kb on - strand at 5995.306 kb on + strand at 5995.306 kb on + strand at 5995.306 kb on + strand at 5995.306 kb on + strand at 5995.306 kb on + strand at 5995.307 kb on - strand at 5995.307 kb on - strand at 5995.307 kb on - strand at 5995.307 kb on - strand at 5995.307 kb on - strand at 5995.307 kb on - strand at 5995.307 kb on - strand at 5995.387 kb on + strand, within QEN71_RS26885 at 5995.387 kb on + strand, within QEN71_RS26885 at 5995.387 kb on + strand, within QEN71_RS26885 at 5995.387 kb on + strand, within QEN71_RS26885 at 5995.387 kb on + strand, within QEN71_RS26885 at 5995.388 kb on - strand, within QEN71_RS26885 at 5995.388 kb on - strand, within QEN71_RS26885 at 5995.388 kb on - strand, within QEN71_RS26885
Per-strain Table
Position Strand Gene LocusTag Fraction LB_noSalt with Chloride 200 mM remove 5,992,867 + +0.1 5,992,867 + +0.1 5,992,867 + -1.4 5,992,867 + -0.9 5,992,881 + -1.1 5,992,923 - -0.1 5,992,956 + +1.7 5,992,956 + -0.6 5,992,956 + -1.0 5,992,956 + -0.1 5,992,956 + +0.5 5,992,957 - -0.7 5,992,957 - +1.3 5,992,957 - -0.3 5,992,957 - -0.4 5,992,957 - -2.1 5,993,041 + -0.1 5,993,041 + -0.9 5,993,042 - -0.5 5,993,042 - +0.4 5,993,042 - +0.1 5,993,295 + QEN71_RS26870 0.34 +0.8 5,993,296 - QEN71_RS26870 0.34 -0.5 5,993,296 - QEN71_RS26870 0.34 -2.8 5,993,296 - QEN71_RS26870 0.34 -0.4 5,993,296 - QEN71_RS26870 0.34 -0.5 5,993,374 + QEN71_RS26870 0.45 -0.6 5,993,741 - -0.2 5,993,762 + -0.2 5,993,762 + -0.3 5,993,762 + -2.0 5,993,763 - +0.6 5,993,763 - -0.4 5,993,763 - +0.1 5,993,832 + -1.2 5,993,832 + -0.5 5,993,833 - -0.5 5,993,833 - -0.2 5,993,833 - -0.2 5,993,833 - -1.0 5,993,852 + QEN71_RS26875 0.12 -1.0 5,993,852 + QEN71_RS26875 0.12 -0.3 5,993,853 - QEN71_RS26875 0.13 +0.8 5,993,869 + QEN71_RS26875 0.15 +0.6 5,993,869 + QEN71_RS26875 0.15 -0.6 5,993,870 - QEN71_RS26875 0.15 +0.3 5,993,887 + QEN71_RS26875 0.18 -0.2 5,993,888 - QEN71_RS26875 0.18 +1.0 5,993,888 - QEN71_RS26875 0.18 -0.1 5,993,888 - QEN71_RS26875 0.18 -1.1 5,993,928 + QEN71_RS26875 0.24 -1.3 5,993,929 - QEN71_RS26875 0.24 -0.6 5,993,929 - QEN71_RS26875 0.24 +0.8 5,993,929 - QEN71_RS26875 0.24 -0.5 5,993,941 + QEN71_RS26875 0.26 -0.3 5,994,033 + QEN71_RS26875 0.39 -0.8 5,994,033 + QEN71_RS26875 0.39 +0.0 5,994,033 + QEN71_RS26875 0.39 +0.3 5,994,034 - QEN71_RS26875 0.39 +0.1 5,994,111 + QEN71_RS26875 0.51 -0.1 5,994,111 + QEN71_RS26875 0.51 -0.4 5,994,111 + QEN71_RS26875 0.51 -0.2 5,994,112 - QEN71_RS26875 0.51 -1.1 5,994,112 - QEN71_RS26875 0.51 -0.5 5,994,112 - QEN71_RS26875 0.51 +2.3 5,994,114 + QEN71_RS26875 0.51 +0.2 5,994,114 + QEN71_RS26875 0.51 +0.5 5,994,114 + QEN71_RS26875 0.51 +0.4 5,994,114 + QEN71_RS26875 0.51 -0.2 5,994,115 - QEN71_RS26875 0.51 +0.2 5,994,115 - QEN71_RS26875 0.51 +0.5 5,994,270 + QEN71_RS26875 0.74 -1.8 5,994,270 + QEN71_RS26875 0.74 -0.1 5,994,270 + QEN71_RS26875 0.74 -0.1 5,994,270 + QEN71_RS26875 0.74 +0.4 5,994,270 + QEN71_RS26875 0.74 -1.2 5,994,270 + QEN71_RS26875 0.74 -0.2 5,994,270 + QEN71_RS26875 0.74 +0.5 5,994,270 + QEN71_RS26875 0.74 -1.2 5,994,271 - QEN71_RS26875 0.74 +0.2 5,994,271 - QEN71_RS26875 0.74 -0.6 5,994,271 - QEN71_RS26875 0.74 +0.2 5,994,271 - QEN71_RS26875 0.74 -0.8 5,994,271 - QEN71_RS26875 0.74 +0.4 5,994,461 + -1.8 5,994,461 + -0.3 5,994,461 + +0.1 5,994,461 + -1.1 5,994,461 + -0.4 5,994,461 + +3.0 5,994,461 + -0.2 5,994,461 + -1.6 5,994,461 + -0.8 5,994,462 - +0.2 5,994,462 - +0.0 5,994,462 - -0.6 5,994,530 + QEN71_RS26880 0.11 +0.7 5,994,530 + QEN71_RS26880 0.11 -0.5 5,994,530 + QEN71_RS26880 0.11 -1.2 5,994,531 - QEN71_RS26880 0.12 +0.1 5,994,531 - QEN71_RS26880 0.12 -0.1 5,994,531 - QEN71_RS26880 0.12 +0.0 5,994,560 + QEN71_RS26880 0.16 +1.0 5,994,560 + QEN71_RS26880 0.16 -0.3 5,994,560 + QEN71_RS26880 0.16 -0.3 5,994,560 + QEN71_RS26880 0.16 -0.2 5,994,560 + QEN71_RS26880 0.16 +0.9 5,994,560 + QEN71_RS26880 0.16 +0.1 5,994,560 + QEN71_RS26880 0.16 -0.2 5,994,561 - QEN71_RS26880 0.16 -0.2 5,994,561 - QEN71_RS26880 0.16 -0.5 5,994,561 - QEN71_RS26880 0.16 -0.2 5,994,561 - QEN71_RS26880 0.16 +1.6 5,994,561 - QEN71_RS26880 0.16 +1.3 5,994,561 - QEN71_RS26880 0.16 -0.3 5,994,561 - QEN71_RS26880 0.16 +2.0 5,994,561 - QEN71_RS26880 0.16 -1.7 5,994,561 - QEN71_RS26880 0.16 -0.2 5,994,561 - QEN71_RS26880 0.16 -0.3 5,994,575 + QEN71_RS26880 0.18 +0.8 5,994,576 - QEN71_RS26880 0.18 +0.5 5,994,576 - QEN71_RS26880 0.18 -0.3 5,994,576 - QEN71_RS26880 0.18 -0.0 5,994,713 + QEN71_RS26880 0.36 +0.8 5,994,713 + QEN71_RS26880 0.36 +0.4 5,994,714 - QEN71_RS26880 0.36 -0.3 5,994,714 - QEN71_RS26880 0.36 -0.5 5,994,714 - QEN71_RS26880 0.36 -0.5 5,994,719 + QEN71_RS26880 0.37 +0.3 5,994,719 + QEN71_RS26880 0.37 -0.5 5,994,719 + QEN71_RS26880 0.37 -1.2 5,994,720 - QEN71_RS26880 0.37 -0.8 5,994,720 - QEN71_RS26880 0.37 -0.5 5,994,720 - QEN71_RS26880 0.37 +0.8 5,994,720 - QEN71_RS26880 0.37 -0.8 5,994,720 - QEN71_RS26880 0.37 +0.0 5,994,891 + QEN71_RS26880 0.60 -1.4 5,994,891 + QEN71_RS26880 0.60 +0.6 5,994,891 + QEN71_RS26880 0.60 +0.7 5,994,891 + QEN71_RS26880 0.60 -0.3 5,994,892 - QEN71_RS26880 0.60 +1.3 5,994,892 - QEN71_RS26880 0.60 -0.3 5,994,892 - QEN71_RS26880 0.60 +0.4 5,994,892 - QEN71_RS26880 0.60 -0.4 5,994,892 - QEN71_RS26880 0.60 +0.4 5,994,892 - QEN71_RS26880 0.60 -0.3 5,994,892 - QEN71_RS26880 0.60 +0.0 5,994,929 + QEN71_RS26880 0.65 -0.5 5,994,930 - QEN71_RS26880 0.65 -0.3 5,994,930 - QEN71_RS26880 0.65 +1.7 5,994,964 - QEN71_RS26880 0.70 +0.9 5,994,980 + QEN71_RS26880 0.72 -0.3 5,994,981 - QEN71_RS26880 0.72 +0.1 5,994,981 - QEN71_RS26880 0.72 -0.3 5,994,981 - QEN71_RS26880 0.72 +0.0 5,995,121 + +1.3 5,995,121 + +1.2 5,995,121 + +0.0 5,995,121 + -0.6 5,995,121 + -0.8 5,995,121 + +1.8 5,995,121 + +0.0 5,995,122 - -0.3 5,995,122 - -0.1 5,995,122 - -1.3 5,995,122 - +0.3 5,995,122 - -1.3 5,995,122 - +0.4 5,995,153 + -1.2 5,995,153 + +1.4 5,995,153 + +0.1 5,995,154 - -0.2 5,995,178 + -0.1 5,995,178 + -0.6 5,995,178 + -0.4 5,995,179 - +0.4 5,995,179 - -3.3 5,995,306 + -0.8 5,995,306 + -0.4 5,995,306 + +0.6 5,995,306 + -0.3 5,995,306 + -0.6 5,995,307 - -1.7 5,995,307 - +0.9 5,995,307 - -0.1 5,995,307 - -0.2 5,995,307 - -0.4 5,995,307 - -0.6 5,995,307 - -1.2 5,995,387 + QEN71_RS26885 0.13 -0.3 5,995,387 + QEN71_RS26885 0.13 -0.2 5,995,387 + QEN71_RS26885 0.13 -0.4 5,995,387 + QEN71_RS26885 0.13 -1.0 5,995,387 + QEN71_RS26885 0.13 -0.1 5,995,388 - QEN71_RS26885 0.13 +0.2 5,995,388 - QEN71_RS26885 0.13 +0.6 5,995,388 - QEN71_RS26885 0.13 +1.1
Or see this region's nucleotide sequence