Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS25325

Experiment: LB_noSalt with Chloride 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS25310 and QEN71_RS25315 are separated by 31 nucleotidesQEN71_RS25315 and QEN71_RS25320 are separated by 13 nucleotidesQEN71_RS25320 and QEN71_RS25325 are separated by 29 nucleotidesQEN71_RS25325 and QEN71_RS25330 overlap by 4 nucleotides QEN71_RS25310: QEN71_RS25310 - protein-L-isoaspartate O-methyltransferase, at 5,631,973 to 5,632,626 _RS25310 QEN71_RS25315: QEN71_RS25315 - rhodanese-like domain-containing protein, at 5,632,658 to 5,632,981 _RS25315 QEN71_RS25320: QEN71_RS25320 - hypothetical protein, at 5,632,995 to 5,633,156 _RS25320 QEN71_RS25325: QEN71_RS25325 - DUF2844 domain-containing protein, at 5,633,186 to 5,633,641 _RS25325 QEN71_RS25330: QEN71_RS25330 - DUF3443 domain-containing protein, at 5,633,638 to 5,635,062 _RS25330 Position (kb) 5633 5634Strain fitness (log2 ratio) -2 -1 0 1 2at 5632.240 kb on + strand, within QEN71_RS25310at 5632.290 kb on + strand, within QEN71_RS25310at 5632.904 kb on + strand, within QEN71_RS25315at 5632.925 kb on + strand, within QEN71_RS25315at 5632.976 kb on + strandat 5633.023 kb on - strand, within QEN71_RS25320at 5633.156 kb on + strandat 5633.156 kb on + strandat 5633.156 kb on + strandat 5633.157 kb on - strandat 5633.157 kb on - strandat 5633.157 kb on - strandat 5633.157 kb on - strandat 5633.179 kb on + strandat 5633.180 kb on - strandat 5633.339 kb on + strand, within QEN71_RS25325at 5633.339 kb on + strand, within QEN71_RS25325at 5633.339 kb on + strand, within QEN71_RS25325at 5633.469 kb on - strand, within QEN71_RS25325at 5633.591 kb on + strand, within QEN71_RS25325at 5633.591 kb on + strand, within QEN71_RS25325at 5633.592 kb on - strand, within QEN71_RS25325at 5633.647 kb on + strandat 5633.648 kb on - strandat 5633.742 kb on + strandat 5633.838 kb on + strand, within QEN71_RS25330at 5633.839 kb on - strand, within QEN71_RS25330at 5633.892 kb on + strand, within QEN71_RS25330at 5633.893 kb on - strand, within QEN71_RS25330at 5634.007 kb on + strand, within QEN71_RS25330at 5634.007 kb on + strand, within QEN71_RS25330at 5634.007 kb on + strand, within QEN71_RS25330at 5634.007 kb on + strand, within QEN71_RS25330at 5634.007 kb on + strand, within QEN71_RS25330at 5634.007 kb on + strand, within QEN71_RS25330at 5634.008 kb on - strand, within QEN71_RS25330at 5634.008 kb on - strand, within QEN71_RS25330at 5634.008 kb on - strand, within QEN71_RS25330at 5634.008 kb on - strand, within QEN71_RS25330at 5634.059 kb on + strand, within QEN71_RS25330at 5634.059 kb on + strand, within QEN71_RS25330at 5634.059 kb on + strand, within QEN71_RS25330at 5634.059 kb on + strand, within QEN71_RS25330at 5634.101 kb on + strand, within QEN71_RS25330at 5634.102 kb on - strand, within QEN71_RS25330at 5634.350 kb on + strand, within QEN71_RS25330at 5634.351 kb on - strand, within QEN71_RS25330at 5634.457 kb on + strand, within QEN71_RS25330at 5634.457 kb on + strand, within QEN71_RS25330at 5634.457 kb on + strand, within QEN71_RS25330at 5634.457 kb on + strand, within QEN71_RS25330at 5634.457 kb on + strand, within QEN71_RS25330at 5634.457 kb on + strand, within QEN71_RS25330at 5634.458 kb on - strand, within QEN71_RS25330at 5634.458 kb on - strand, within QEN71_RS25330at 5634.458 kb on - strand, within QEN71_RS25330at 5634.458 kb on - strand, within QEN71_RS25330at 5634.458 kb on - strand, within QEN71_RS25330at 5634.458 kb on - strand, within QEN71_RS25330at 5634.460 kb on + strand, within QEN71_RS25330at 5634.461 kb on - strand, within QEN71_RS25330at 5634.461 kb on - strand, within QEN71_RS25330at 5634.461 kb on - strand, within QEN71_RS25330at 5634.461 kb on - strand, within QEN71_RS25330at 5634.461 kb on - strand, within QEN71_RS25330at 5634.461 kb on - strand, within QEN71_RS25330at 5634.461 kb on - strand, within QEN71_RS25330at 5634.461 kb on - strand, within QEN71_RS25330at 5634.461 kb on - strand, within QEN71_RS25330at 5634.463 kb on + strand, within QEN71_RS25330at 5634.463 kb on + strand, within QEN71_RS25330at 5634.464 kb on - strand, within QEN71_RS25330at 5634.464 kb on - strand, within QEN71_RS25330at 5634.464 kb on - strand, within QEN71_RS25330at 5634.464 kb on - strand, within QEN71_RS25330at 5634.464 kb on - strand, within QEN71_RS25330at 5634.464 kb on - strand, within QEN71_RS25330at 5634.464 kb on - strand, within QEN71_RS25330at 5634.464 kb on - strand, within QEN71_RS25330at 5634.464 kb on - strand, within QEN71_RS25330at 5634.605 kb on + strand, within QEN71_RS25330

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_noSalt with Chloride 200 mM
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5,632,240 + QEN71_RS25310 0.41 -1.2
5,632,290 + QEN71_RS25310 0.48 +0.0
5,632,904 + QEN71_RS25315 0.76 +0.4
5,632,925 + QEN71_RS25315 0.82 +0.2
5,632,976 + -1.3
5,633,023 - QEN71_RS25320 0.17 -0.7
5,633,156 + +0.5
5,633,156 + -0.8
5,633,156 + +0.7
5,633,157 - +1.2
5,633,157 - -0.2
5,633,157 - +0.3
5,633,157 - +0.7
5,633,179 + -0.3
5,633,180 - -2.3
5,633,339 + QEN71_RS25325 0.34 +1.8
5,633,339 + QEN71_RS25325 0.34 +0.5
5,633,339 + QEN71_RS25325 0.34 +1.7
5,633,469 - QEN71_RS25325 0.62 +0.6
5,633,591 + QEN71_RS25325 0.89 -0.8
5,633,591 + QEN71_RS25325 0.89 -1.8
5,633,592 - QEN71_RS25325 0.89 -0.6
5,633,647 + -0.1
5,633,648 - +1.3
5,633,742 + -1.3
5,633,838 + QEN71_RS25330 0.14 -0.8
5,633,839 - QEN71_RS25330 0.14 +0.2
5,633,892 + QEN71_RS25330 0.18 -0.6
5,633,893 - QEN71_RS25330 0.18 +1.0
5,634,007 + QEN71_RS25330 0.26 +0.6
5,634,007 + QEN71_RS25330 0.26 +0.5
5,634,007 + QEN71_RS25330 0.26 -0.7
5,634,007 + QEN71_RS25330 0.26 -0.1
5,634,007 + QEN71_RS25330 0.26 +0.1
5,634,007 + QEN71_RS25330 0.26 -0.8
5,634,008 - QEN71_RS25330 0.26 -1.2
5,634,008 - QEN71_RS25330 0.26 -0.8
5,634,008 - QEN71_RS25330 0.26 -1.2
5,634,008 - QEN71_RS25330 0.26 -0.2
5,634,059 + QEN71_RS25330 0.30 -0.7
5,634,059 + QEN71_RS25330 0.30 -0.5
5,634,059 + QEN71_RS25330 0.30 -0.3
5,634,059 + QEN71_RS25330 0.30 -1.1
5,634,101 + QEN71_RS25330 0.32 -0.8
5,634,102 - QEN71_RS25330 0.33 +0.6
5,634,350 + QEN71_RS25330 0.50 +0.5
5,634,351 - QEN71_RS25330 0.50 +0.4
5,634,457 + QEN71_RS25330 0.57 -1.8
5,634,457 + QEN71_RS25330 0.57 +0.6
5,634,457 + QEN71_RS25330 0.57 +0.1
5,634,457 + QEN71_RS25330 0.57 -0.3
5,634,457 + QEN71_RS25330 0.57 +1.6
5,634,457 + QEN71_RS25330 0.57 -0.1
5,634,458 - QEN71_RS25330 0.58 -1.6
5,634,458 - QEN71_RS25330 0.58 -0.3
5,634,458 - QEN71_RS25330 0.58 +0.6
5,634,458 - QEN71_RS25330 0.58 +0.4
5,634,458 - QEN71_RS25330 0.58 +0.6
5,634,458 - QEN71_RS25330 0.58 -0.4
5,634,460 + QEN71_RS25330 0.58 -0.2
5,634,461 - QEN71_RS25330 0.58 +0.0
5,634,461 - QEN71_RS25330 0.58 -0.1
5,634,461 - QEN71_RS25330 0.58 +0.7
5,634,461 - QEN71_RS25330 0.58 +0.3
5,634,461 - QEN71_RS25330 0.58 +1.3
5,634,461 - QEN71_RS25330 0.58 -0.1
5,634,461 - QEN71_RS25330 0.58 +0.3
5,634,461 - QEN71_RS25330 0.58 -0.5
5,634,461 - QEN71_RS25330 0.58 -0.3
5,634,463 + QEN71_RS25330 0.58 -1.8
5,634,463 + QEN71_RS25330 0.58 -0.8
5,634,464 - QEN71_RS25330 0.58 +0.1
5,634,464 - QEN71_RS25330 0.58 +0.1
5,634,464 - QEN71_RS25330 0.58 -0.6
5,634,464 - QEN71_RS25330 0.58 +0.4
5,634,464 - QEN71_RS25330 0.58 +0.3
5,634,464 - QEN71_RS25330 0.58 -1.1
5,634,464 - QEN71_RS25330 0.58 +0.4
5,634,464 - QEN71_RS25330 0.58 -0.2
5,634,464 - QEN71_RS25330 0.58 -1.5
5,634,605 + QEN71_RS25330 0.68 -0.1

Or see this region's nucleotide sequence