Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS23775

Experiment: LB_noSalt with Chloride 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS23770 and QEN71_RS23775 are separated by 233 nucleotidesQEN71_RS23775 and QEN71_RS23780 are separated by 60 nucleotides QEN71_RS23770: QEN71_RS23770 - DMT family transporter, at 5,298,022 to 5,298,921 _RS23770 QEN71_RS23775: QEN71_RS23775 - TIGR00645 family protein, at 5,299,155 to 5,299,757 _RS23775 QEN71_RS23780: QEN71_RS23780 - fumarate hydratase, at 5,299,818 to 5,301,341 _RS23780 Position (kb) 5299 5300Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 5298.252 kb on + strand, within QEN71_RS23770at 5298.320 kb on + strand, within QEN71_RS23770at 5298.393 kb on - strand, within QEN71_RS23770at 5298.520 kb on + strand, within QEN71_RS23770at 5298.520 kb on + strand, within QEN71_RS23770at 5298.521 kb on - strand, within QEN71_RS23770at 5298.521 kb on - strand, within QEN71_RS23770at 5298.577 kb on + strand, within QEN71_RS23770at 5298.577 kb on + strand, within QEN71_RS23770at 5298.577 kb on + strand, within QEN71_RS23770at 5298.577 kb on + strand, within QEN71_RS23770at 5298.577 kb on + strand, within QEN71_RS23770at 5298.577 kb on + strand, within QEN71_RS23770at 5298.577 kb on + strand, within QEN71_RS23770at 5298.577 kb on + strand, within QEN71_RS23770at 5298.577 kb on + strand, within QEN71_RS23770at 5298.578 kb on - strand, within QEN71_RS23770at 5298.578 kb on - strand, within QEN71_RS23770at 5298.578 kb on - strand, within QEN71_RS23770at 5298.578 kb on - strand, within QEN71_RS23770at 5298.685 kb on + strand, within QEN71_RS23770at 5298.685 kb on + strand, within QEN71_RS23770at 5298.685 kb on + strand, within QEN71_RS23770at 5298.800 kb on - strand, within QEN71_RS23770at 5298.800 kb on - strand, within QEN71_RS23770at 5298.991 kb on + strandat 5298.991 kb on + strandat 5298.991 kb on + strandat 5298.992 kb on - strandat 5298.992 kb on - strandat 5298.992 kb on - strandat 5298.992 kb on - strandat 5298.997 kb on - strandat 5299.138 kb on + strandat 5299.138 kb on + strandat 5299.138 kb on + strandat 5299.141 kb on + strandat 5299.141 kb on + strandat 5299.141 kb on + strandat 5299.142 kb on - strandat 5299.251 kb on + strand, within QEN71_RS23775at 5299.251 kb on + strand, within QEN71_RS23775at 5299.251 kb on + strand, within QEN71_RS23775at 5299.251 kb on + strand, within QEN71_RS23775at 5299.251 kb on + strand, within QEN71_RS23775at 5299.252 kb on - strand, within QEN71_RS23775at 5299.252 kb on - strand, within QEN71_RS23775at 5299.252 kb on - strand, within QEN71_RS23775at 5299.281 kb on + strand, within QEN71_RS23775at 5299.282 kb on - strand, within QEN71_RS23775at 5299.601 kb on - strand, within QEN71_RS23775at 5299.601 kb on - strand, within QEN71_RS23775at 5299.601 kb on - strand, within QEN71_RS23775at 5299.648 kb on + strand, within QEN71_RS23775at 5299.679 kb on + strand, within QEN71_RS23775at 5299.679 kb on + strand, within QEN71_RS23775at 5299.680 kb on - strand, within QEN71_RS23775at 5299.680 kb on - strand, within QEN71_RS23775at 5299.680 kb on - strand, within QEN71_RS23775at 5299.680 kb on - strand, within QEN71_RS23775at 5299.680 kb on - strand, within QEN71_RS23775at 5299.785 kb on + strandat 5299.813 kb on + strandat 5299.813 kb on + strandat 5299.813 kb on + strandat 5299.813 kb on + strandat 5299.813 kb on + strandat 5299.813 kb on + strandat 5299.814 kb on - strandat 5299.814 kb on - strandat 5299.814 kb on - strandat 5299.853 kb on + strandat 5299.853 kb on + strandat 5299.853 kb on + strandat 5299.854 kb on - strandat 5299.872 kb on + strandat 5299.872 kb on + strandat 5299.872 kb on + strandat 5299.873 kb on - strandat 5299.873 kb on - strandat 5299.873 kb on - strandat 5299.873 kb on - strandat 5299.881 kb on + strandat 5299.881 kb on + strandat 5299.882 kb on - strandat 5299.882 kb on - strandat 5299.882 kb on - strandat 5299.882 kb on - strandat 5299.882 kb on - strandat 5299.884 kb on + strandat 5299.885 kb on - strandat 5299.885 kb on - strandat 5299.899 kb on + strandat 5299.900 kb on - strandat 5299.900 kb on - strandat 5299.900 kb on - strandat 5299.924 kb on - strandat 5300.125 kb on - strand, within QEN71_RS23780at 5300.220 kb on + strand, within QEN71_RS23780at 5300.221 kb on - strand, within QEN71_RS23780

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_noSalt with Chloride 200 mM
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5,298,252 + QEN71_RS23770 0.26 -0.3
5,298,320 + QEN71_RS23770 0.33 -0.5
5,298,393 - QEN71_RS23770 0.41 -1.1
5,298,520 + QEN71_RS23770 0.55 -0.1
5,298,520 + QEN71_RS23770 0.55 -0.7
5,298,521 - QEN71_RS23770 0.55 +0.9
5,298,521 - QEN71_RS23770 0.55 +0.3
5,298,577 + QEN71_RS23770 0.62 +0.2
5,298,577 + QEN71_RS23770 0.62 -0.4
5,298,577 + QEN71_RS23770 0.62 +0.5
5,298,577 + QEN71_RS23770 0.62 -1.4
5,298,577 + QEN71_RS23770 0.62 -0.2
5,298,577 + QEN71_RS23770 0.62 -1.1
5,298,577 + QEN71_RS23770 0.62 -1.9
5,298,577 + QEN71_RS23770 0.62 -0.5
5,298,577 + QEN71_RS23770 0.62 -1.5
5,298,578 - QEN71_RS23770 0.62 -0.2
5,298,578 - QEN71_RS23770 0.62 -0.5
5,298,578 - QEN71_RS23770 0.62 -3.1
5,298,578 - QEN71_RS23770 0.62 -3.1
5,298,685 + QEN71_RS23770 0.74 +0.2
5,298,685 + QEN71_RS23770 0.74 +0.5
5,298,685 + QEN71_RS23770 0.74 -0.1
5,298,800 - QEN71_RS23770 0.86 +0.6
5,298,800 - QEN71_RS23770 0.86 +0.1
5,298,991 + -1.2
5,298,991 + +1.5
5,298,991 + -0.8
5,298,992 - +0.7
5,298,992 - -0.2
5,298,992 - -2.1
5,298,992 - +0.1
5,298,997 - -0.4
5,299,138 + +1.9
5,299,138 + +0.1
5,299,138 + -1.2
5,299,141 + -1.0
5,299,141 + +0.6
5,299,141 + -1.2
5,299,142 - -0.4
5,299,251 + QEN71_RS23775 0.16 -1.4
5,299,251 + QEN71_RS23775 0.16 +0.3
5,299,251 + QEN71_RS23775 0.16 -0.1
5,299,251 + QEN71_RS23775 0.16 -1.7
5,299,251 + QEN71_RS23775 0.16 -1.0
5,299,252 - QEN71_RS23775 0.16 -3.3
5,299,252 - QEN71_RS23775 0.16 -1.8
5,299,252 - QEN71_RS23775 0.16 -1.2
5,299,281 + QEN71_RS23775 0.21 -0.8
5,299,282 - QEN71_RS23775 0.21 -1.6
5,299,601 - QEN71_RS23775 0.74 -1.1
5,299,601 - QEN71_RS23775 0.74 -1.4
5,299,601 - QEN71_RS23775 0.74 -1.4
5,299,648 + QEN71_RS23775 0.82 -0.2
5,299,679 + QEN71_RS23775 0.87 +0.4
5,299,679 + QEN71_RS23775 0.87 +0.0
5,299,680 - QEN71_RS23775 0.87 -1.1
5,299,680 - QEN71_RS23775 0.87 -4.1
5,299,680 - QEN71_RS23775 0.87 +0.1
5,299,680 - QEN71_RS23775 0.87 -0.3
5,299,680 - QEN71_RS23775 0.87 -2.6
5,299,785 + -0.7
5,299,813 + -0.9
5,299,813 + -0.8
5,299,813 + -0.3
5,299,813 + -0.3
5,299,813 + -0.5
5,299,813 + +1.2
5,299,814 - -0.4
5,299,814 - -0.0
5,299,814 - -1.3
5,299,853 + -0.7
5,299,853 + +0.3
5,299,853 + +0.9
5,299,854 - +1.3
5,299,872 + +0.3
5,299,872 + -1.1
5,299,872 + -3.0
5,299,873 - -0.7
5,299,873 - -0.1
5,299,873 - -0.6
5,299,873 - -1.5
5,299,881 + -0.1
5,299,881 + +0.3
5,299,882 - +0.0
5,299,882 - -0.6
5,299,882 - -0.1
5,299,882 - -0.4
5,299,882 - +0.4
5,299,884 + -0.9
5,299,885 - -1.8
5,299,885 - +0.6
5,299,899 + -0.7
5,299,900 - -1.6
5,299,900 - -0.4
5,299,900 - -1.6
5,299,924 - -0.2
5,300,125 - QEN71_RS23780 0.20 -0.1
5,300,220 + QEN71_RS23780 0.26 +0.4
5,300,221 - QEN71_RS23780 0.26 -0.2

Or see this region's nucleotide sequence