Experiment: LB_noSalt with Chloride 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS23375 and QEN71_RS23380 are separated by 770 nucleotides QEN71_RS23380 and QEN71_RS23385 are separated by 24 nucleotides QEN71_RS23385 and QEN71_RS23390 are separated by 136 nucleotides
QEN71_RS23375: QEN71_RS23375 - aspartate aminotransferase family protein, at 5,206,317 to 5,207,546
_RS23375
QEN71_RS23380: QEN71_RS23380 - GlxA family transcriptional regulator, at 5,208,317 to 5,209,339
_RS23380
QEN71_RS23385: QEN71_RS23385 - ABC transporter ATP-binding protein, at 5,209,364 to 5,210,137
_RS23385
QEN71_RS23390: QEN71_RS23390 - ABC transporter permease, at 5,210,274 to 5,210,984
_RS23390
Position (kb)
5208
5209
5210 Strain fitness (log2 ratio)
-2
-1
0
1 at 5207.584 kb on - strand at 5207.589 kb on - strand at 5207.589 kb on - strand at 5207.666 kb on - strand at 5207.724 kb on - strand at 5207.724 kb on - strand at 5207.746 kb on - strand at 5208.014 kb on + strand at 5208.014 kb on + strand at 5208.030 kb on + strand at 5208.048 kb on - strand at 5208.048 kb on - strand at 5208.287 kb on + strand at 5208.287 kb on + strand at 5208.294 kb on + strand at 5208.294 kb on + strand at 5208.295 kb on - strand at 5208.318 kb on + strand at 5208.334 kb on + strand at 5208.419 kb on - strand at 5208.419 kb on - strand at 5208.419 kb on - strand at 5208.467 kb on - strand, within QEN71_RS23380 at 5208.562 kb on - strand, within QEN71_RS23380 at 5209.735 kb on - strand, within QEN71_RS23385 at 5210.003 kb on - strand, within QEN71_RS23385 at 5210.003 kb on - strand, within QEN71_RS23385 at 5210.245 kb on - strand at 5210.245 kb on - strand at 5210.254 kb on - strand at 5210.294 kb on - strand at 5210.294 kb on - strand at 5210.294 kb on - strand at 5210.294 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB_noSalt with Chloride 200 mM remove 5,207,584 - -0.7 5,207,589 - -0.9 5,207,589 - -0.7 5,207,666 - +0.7 5,207,724 - -0.7 5,207,724 - -0.9 5,207,746 - -0.3 5,208,014 + -1.3 5,208,014 + -0.7 5,208,030 + -0.3 5,208,048 - +0.0 5,208,048 - +0.9 5,208,287 + -0.3 5,208,287 + -0.1 5,208,294 + -0.8 5,208,294 + +0.1 5,208,295 - -0.3 5,208,318 + +0.4 5,208,334 + -0.1 5,208,419 - +1.3 5,208,419 - -0.1 5,208,419 - +0.6 5,208,467 - QEN71_RS23380 0.15 -1.4 5,208,562 - QEN71_RS23380 0.24 -1.4 5,209,735 - QEN71_RS23385 0.48 +0.6 5,210,003 - QEN71_RS23385 0.83 -0.3 5,210,003 - QEN71_RS23385 0.83 +0.3 5,210,245 - -0.4 5,210,245 - -0.5 5,210,254 - -0.1 5,210,294 - -0.8 5,210,294 - -0.1 5,210,294 - -2.3 5,210,294 - +0.3
Or see this region's nucleotide sequence