Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS23380

Experiment: LB_noSalt with Chloride 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS23375 and QEN71_RS23380 are separated by 770 nucleotidesQEN71_RS23380 and QEN71_RS23385 are separated by 24 nucleotidesQEN71_RS23385 and QEN71_RS23390 are separated by 136 nucleotides QEN71_RS23375: QEN71_RS23375 - aspartate aminotransferase family protein, at 5,206,317 to 5,207,546 _RS23375 QEN71_RS23380: QEN71_RS23380 - GlxA family transcriptional regulator, at 5,208,317 to 5,209,339 _RS23380 QEN71_RS23385: QEN71_RS23385 - ABC transporter ATP-binding protein, at 5,209,364 to 5,210,137 _RS23385 QEN71_RS23390: QEN71_RS23390 - ABC transporter permease, at 5,210,274 to 5,210,984 _RS23390 Position (kb) 5208 5209 5210Strain fitness (log2 ratio) -2 -1 0 1at 5207.584 kb on - strandat 5207.589 kb on - strandat 5207.589 kb on - strandat 5207.666 kb on - strandat 5207.724 kb on - strandat 5207.724 kb on - strandat 5207.746 kb on - strandat 5208.014 kb on + strandat 5208.014 kb on + strandat 5208.030 kb on + strandat 5208.048 kb on - strandat 5208.048 kb on - strandat 5208.287 kb on + strandat 5208.287 kb on + strandat 5208.294 kb on + strandat 5208.294 kb on + strandat 5208.295 kb on - strandat 5208.318 kb on + strandat 5208.334 kb on + strandat 5208.419 kb on - strandat 5208.419 kb on - strandat 5208.419 kb on - strandat 5208.467 kb on - strand, within QEN71_RS23380at 5208.562 kb on - strand, within QEN71_RS23380at 5209.735 kb on - strand, within QEN71_RS23385at 5210.003 kb on - strand, within QEN71_RS23385at 5210.003 kb on - strand, within QEN71_RS23385at 5210.245 kb on - strandat 5210.245 kb on - strandat 5210.254 kb on - strandat 5210.294 kb on - strandat 5210.294 kb on - strandat 5210.294 kb on - strandat 5210.294 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_noSalt with Chloride 200 mM
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5,207,584 - -0.7
5,207,589 - -0.9
5,207,589 - -0.7
5,207,666 - +0.7
5,207,724 - -0.7
5,207,724 - -0.9
5,207,746 - -0.3
5,208,014 + -1.3
5,208,014 + -0.7
5,208,030 + -0.3
5,208,048 - +0.0
5,208,048 - +0.9
5,208,287 + -0.3
5,208,287 + -0.1
5,208,294 + -0.8
5,208,294 + +0.1
5,208,295 - -0.3
5,208,318 + +0.4
5,208,334 + -0.1
5,208,419 - +1.3
5,208,419 - -0.1
5,208,419 - +0.6
5,208,467 - QEN71_RS23380 0.15 -1.4
5,208,562 - QEN71_RS23380 0.24 -1.4
5,209,735 - QEN71_RS23385 0.48 +0.6
5,210,003 - QEN71_RS23385 0.83 -0.3
5,210,003 - QEN71_RS23385 0.83 +0.3
5,210,245 - -0.4
5,210,245 - -0.5
5,210,254 - -0.1
5,210,294 - -0.8
5,210,294 - -0.1
5,210,294 - -2.3
5,210,294 - +0.3

Or see this region's nucleotide sequence