Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS21550

Experiment: LB_noSalt with Chloride 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS21545 and QEN71_RS21550 overlap by 29 nucleotidesQEN71_RS21550 and QEN71_RS21555 are separated by 172 nucleotides QEN71_RS21545: QEN71_RS21545 - ATP-binding protein, at 4,774,481 to 4,775,791 _RS21545 QEN71_RS21550: QEN71_RS21550 - DEAD/DEAH box helicase, at 4,775,763 to 4,777,997 _RS21550 QEN71_RS21555: QEN71_RS21555 - MDR family MFS transporter, at 4,778,170 to 4,779,681 _RS21555 Position (kb) 4775 4776 4777 4778Strain fitness (log2 ratio) -3 -2 -1 0 1at 4774.793 kb on + strand, within QEN71_RS21545at 4774.794 kb on - strand, within QEN71_RS21545at 4774.994 kb on + strand, within QEN71_RS21545at 4774.994 kb on + strand, within QEN71_RS21545at 4774.995 kb on - strand, within QEN71_RS21545at 4775.129 kb on + strand, within QEN71_RS21545at 4775.129 kb on + strand, within QEN71_RS21545at 4775.129 kb on + strand, within QEN71_RS21545at 4775.130 kb on - strand, within QEN71_RS21545at 4775.130 kb on - strand, within QEN71_RS21545at 4775.130 kb on - strand, within QEN71_RS21545at 4775.130 kb on - strand, within QEN71_RS21545at 4775.130 kb on - strand, within QEN71_RS21545at 4775.130 kb on - strand, within QEN71_RS21545at 4775.130 kb on - strand, within QEN71_RS21545at 4775.130 kb on - strand, within QEN71_RS21545at 4775.130 kb on - strand, within QEN71_RS21545at 4775.175 kb on - strand, within QEN71_RS21545at 4775.217 kb on - strand, within QEN71_RS21545at 4775.252 kb on + strand, within QEN71_RS21545at 4775.252 kb on + strand, within QEN71_RS21545at 4775.363 kb on + strand, within QEN71_RS21545at 4775.363 kb on + strand, within QEN71_RS21545at 4775.363 kb on + strand, within QEN71_RS21545at 4775.364 kb on - strand, within QEN71_RS21545at 4775.369 kb on + strand, within QEN71_RS21545at 4775.370 kb on - strand, within QEN71_RS21545at 4775.370 kb on - strand, within QEN71_RS21545at 4775.370 kb on - strand, within QEN71_RS21545at 4775.429 kb on + strand, within QEN71_RS21545at 4775.429 kb on + strand, within QEN71_RS21545at 4775.430 kb on - strand, within QEN71_RS21545at 4775.477 kb on + strand, within QEN71_RS21545at 4775.477 kb on + strand, within QEN71_RS21545at 4775.477 kb on + strand, within QEN71_RS21545at 4775.477 kb on + strand, within QEN71_RS21545at 4775.477 kb on + strand, within QEN71_RS21545at 4775.477 kb on + strand, within QEN71_RS21545at 4775.477 kb on + strand, within QEN71_RS21545at 4775.478 kb on - strand, within QEN71_RS21545at 4775.478 kb on - strand, within QEN71_RS21545at 4775.478 kb on - strand, within QEN71_RS21545at 4775.478 kb on - strand, within QEN71_RS21545at 4775.478 kb on - strand, within QEN71_RS21545at 4775.507 kb on + strand, within QEN71_RS21545at 4775.507 kb on + strand, within QEN71_RS21545at 4775.508 kb on - strand, within QEN71_RS21545at 4775.508 kb on - strand, within QEN71_RS21545at 4775.508 kb on - strand, within QEN71_RS21545at 4775.508 kb on - strand, within QEN71_RS21545at 4775.597 kb on + strand, within QEN71_RS21545at 4775.597 kb on + strand, within QEN71_RS21545at 4775.597 kb on + strand, within QEN71_RS21545at 4776.015 kb on + strand, within QEN71_RS21550at 4776.015 kb on + strand, within QEN71_RS21550at 4776.015 kb on + strand, within QEN71_RS21550at 4776.015 kb on + strand, within QEN71_RS21550at 4776.016 kb on - strand, within QEN71_RS21550at 4776.016 kb on - strand, within QEN71_RS21550at 4776.016 kb on - strand, within QEN71_RS21550at 4776.016 kb on - strand, within QEN71_RS21550at 4776.243 kb on + strand, within QEN71_RS21550at 4776.243 kb on + strand, within QEN71_RS21550at 4776.243 kb on + strand, within QEN71_RS21550at 4776.243 kb on + strand, within QEN71_RS21550at 4776.243 kb on + strand, within QEN71_RS21550at 4776.243 kb on + strand, within QEN71_RS21550at 4776.243 kb on + strand, within QEN71_RS21550at 4776.243 kb on + strand, within QEN71_RS21550at 4776.244 kb on - strand, within QEN71_RS21550at 4776.244 kb on - strand, within QEN71_RS21550at 4776.244 kb on - strand, within QEN71_RS21550at 4776.244 kb on - strand, within QEN71_RS21550at 4776.244 kb on - strand, within QEN71_RS21550at 4776.244 kb on - strand, within QEN71_RS21550at 4776.447 kb on - strand, within QEN71_RS21550at 4776.480 kb on + strand, within QEN71_RS21550at 4776.480 kb on + strand, within QEN71_RS21550at 4776.481 kb on - strand, within QEN71_RS21550at 4776.481 kb on - strand, within QEN71_RS21550at 4776.582 kb on + strand, within QEN71_RS21550at 4776.582 kb on + strand, within QEN71_RS21550at 4776.582 kb on + strand, within QEN71_RS21550at 4776.582 kb on + strand, within QEN71_RS21550at 4776.582 kb on + strand, within QEN71_RS21550at 4776.582 kb on + strand, within QEN71_RS21550at 4776.582 kb on + strand, within QEN71_RS21550at 4776.582 kb on + strand, within QEN71_RS21550at 4776.582 kb on + strand, within QEN71_RS21550at 4776.582 kb on + strand, within QEN71_RS21550at 4776.582 kb on + strand, within QEN71_RS21550at 4776.582 kb on + strand, within QEN71_RS21550at 4776.582 kb on + strand, within QEN71_RS21550at 4776.582 kb on + strand, within QEN71_RS21550at 4776.582 kb on + strand, within QEN71_RS21550at 4776.582 kb on + strand, within QEN71_RS21550at 4776.582 kb on + strand, within QEN71_RS21550at 4776.582 kb on + strand, within QEN71_RS21550at 4776.583 kb on - strand, within QEN71_RS21550at 4776.583 kb on - strand, within QEN71_RS21550at 4776.583 kb on - strand, within QEN71_RS21550at 4776.583 kb on - strand, within QEN71_RS21550at 4776.583 kb on - strand, within QEN71_RS21550at 4776.583 kb on - strand, within QEN71_RS21550at 4776.583 kb on - strand, within QEN71_RS21550at 4776.583 kb on - strand, within QEN71_RS21550at 4776.583 kb on - strand, within QEN71_RS21550at 4776.583 kb on - strand, within QEN71_RS21550at 4776.645 kb on + strand, within QEN71_RS21550at 4776.646 kb on - strand, within QEN71_RS21550at 4776.646 kb on - strand, within QEN71_RS21550at 4776.646 kb on - strand, within QEN71_RS21550at 4776.646 kb on - strand, within QEN71_RS21550at 4776.656 kb on - strand, within QEN71_RS21550at 4776.930 kb on + strand, within QEN71_RS21550at 4776.930 kb on + strand, within QEN71_RS21550at 4776.930 kb on + strand, within QEN71_RS21550at 4776.930 kb on + strand, within QEN71_RS21550at 4776.931 kb on - strand, within QEN71_RS21550at 4776.931 kb on - strand, within QEN71_RS21550at 4776.931 kb on - strand, within QEN71_RS21550at 4776.931 kb on - strand, within QEN71_RS21550at 4777.288 kb on - strand, within QEN71_RS21550at 4777.288 kb on - strand, within QEN71_RS21550at 4777.288 kb on - strand, within QEN71_RS21550at 4777.296 kb on + strand, within QEN71_RS21550at 4777.296 kb on + strand, within QEN71_RS21550at 4777.297 kb on - strand, within QEN71_RS21550at 4777.297 kb on - strand, within QEN71_RS21550at 4777.297 kb on - strand, within QEN71_RS21550at 4777.297 kb on - strand, within QEN71_RS21550at 4777.297 kb on - strand, within QEN71_RS21550at 4777.297 kb on - strand, within QEN71_RS21550at 4777.455 kb on + strand, within QEN71_RS21550at 4777.456 kb on - strand, within QEN71_RS21550at 4777.456 kb on - strand, within QEN71_RS21550at 4777.456 kb on - strand, within QEN71_RS21550at 4777.456 kb on - strand, within QEN71_RS21550at 4777.456 kb on - strand, within QEN71_RS21550at 4777.926 kb on + strandat 4777.927 kb on - strandat 4778.039 kb on + strandat 4778.039 kb on + strandat 4778.039 kb on + strandat 4778.039 kb on + strandat 4778.039 kb on + strandat 4778.040 kb on - strandat 4778.040 kb on - strandat 4778.040 kb on - strandat 4778.040 kb on - strandat 4778.076 kb on + strandat 4778.076 kb on + strandat 4778.076 kb on + strandat 4778.076 kb on + strandat 4778.076 kb on + strandat 4778.076 kb on + strandat 4778.076 kb on + strandat 4778.076 kb on + strandat 4778.077 kb on - strandat 4778.077 kb on - strandat 4778.077 kb on - strandat 4778.077 kb on - strandat 4778.077 kb on - strandat 4778.077 kb on - strandat 4778.077 kb on - strandat 4778.077 kb on - strandat 4778.077 kb on - strandat 4778.077 kb on - strandat 4778.155 kb on + strandat 4778.155 kb on + strandat 4778.155 kb on + strandat 4778.155 kb on + strandat 4778.155 kb on + strandat 4778.155 kb on + strandat 4778.155 kb on + strandat 4778.155 kb on + strandat 4778.155 kb on + strandat 4778.155 kb on + strandat 4778.155 kb on + strandat 4778.155 kb on + strandat 4778.155 kb on + strandat 4778.155 kb on + strandat 4778.155 kb on + strandat 4778.156 kb on - strandat 4778.156 kb on - strandat 4778.156 kb on - strandat 4778.156 kb on - strandat 4778.156 kb on - strandat 4778.156 kb on - strandat 4778.156 kb on - strandat 4778.156 kb on - strandat 4778.156 kb on - strandat 4778.156 kb on - strandat 4778.156 kb on - strandat 4778.156 kb on - strandat 4778.156 kb on - strandat 4778.156 kb on - strandat 4778.156 kb on - strandat 4778.156 kb on - strandat 4778.156 kb on - strandat 4778.156 kb on - strandat 4778.156 kb on - strandat 4778.156 kb on - strandat 4778.308 kb on + strandat 4778.308 kb on + strandat 4778.309 kb on - strandat 4778.309 kb on - strandat 4778.581 kb on + strand, within QEN71_RS21555at 4778.581 kb on + strand, within QEN71_RS21555at 4778.582 kb on - strand, within QEN71_RS21555at 4778.582 kb on - strand, within QEN71_RS21555at 4778.681 kb on + strand, within QEN71_RS21555at 4778.681 kb on + strand, within QEN71_RS21555at 4778.681 kb on + strand, within QEN71_RS21555at 4778.681 kb on + strand, within QEN71_RS21555at 4778.681 kb on + strand, within QEN71_RS21555at 4778.682 kb on - strand, within QEN71_RS21555at 4778.682 kb on - strand, within QEN71_RS21555at 4778.682 kb on - strand, within QEN71_RS21555at 4778.876 kb on + strand, within QEN71_RS21555at 4778.876 kb on + strand, within QEN71_RS21555at 4778.876 kb on + strand, within QEN71_RS21555at 4778.877 kb on - strand, within QEN71_RS21555

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_noSalt with Chloride 200 mM
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4,774,793 + QEN71_RS21545 0.24 -0.1
4,774,794 - QEN71_RS21545 0.24 -0.6
4,774,994 + QEN71_RS21545 0.39 -1.9
4,774,994 + QEN71_RS21545 0.39 -1.0
4,774,995 - QEN71_RS21545 0.39 +0.8
4,775,129 + QEN71_RS21545 0.49 -0.2
4,775,129 + QEN71_RS21545 0.49 -0.3
4,775,129 + QEN71_RS21545 0.49 -0.2
4,775,130 - QEN71_RS21545 0.50 -0.3
4,775,130 - QEN71_RS21545 0.50 +1.1
4,775,130 - QEN71_RS21545 0.50 +0.2
4,775,130 - QEN71_RS21545 0.50 +0.2
4,775,130 - QEN71_RS21545 0.50 +0.2
4,775,130 - QEN71_RS21545 0.50 +1.4
4,775,130 - QEN71_RS21545 0.50 -1.5
4,775,130 - QEN71_RS21545 0.50 +1.4
4,775,130 - QEN71_RS21545 0.50 -0.6
4,775,175 - QEN71_RS21545 0.53 -1.9
4,775,217 - QEN71_RS21545 0.56 -2.6
4,775,252 + QEN71_RS21545 0.59 -2.1
4,775,252 + QEN71_RS21545 0.59 +0.3
4,775,363 + QEN71_RS21545 0.67 +1.1
4,775,363 + QEN71_RS21545 0.67 -0.1
4,775,363 + QEN71_RS21545 0.67 -2.0
4,775,364 - QEN71_RS21545 0.67 -0.8
4,775,369 + QEN71_RS21545 0.68 -0.6
4,775,370 - QEN71_RS21545 0.68 -0.5
4,775,370 - QEN71_RS21545 0.68 +0.0
4,775,370 - QEN71_RS21545 0.68 -0.5
4,775,429 + QEN71_RS21545 0.72 -0.0
4,775,429 + QEN71_RS21545 0.72 -2.5
4,775,430 - QEN71_RS21545 0.72 -0.6
4,775,477 + QEN71_RS21545 0.76 -0.3
4,775,477 + QEN71_RS21545 0.76 -0.6
4,775,477 + QEN71_RS21545 0.76 -1.2
4,775,477 + QEN71_RS21545 0.76 -0.6
4,775,477 + QEN71_RS21545 0.76 -0.2
4,775,477 + QEN71_RS21545 0.76 +0.1
4,775,477 + QEN71_RS21545 0.76 +1.0
4,775,478 - QEN71_RS21545 0.76 -1.7
4,775,478 - QEN71_RS21545 0.76 -1.2
4,775,478 - QEN71_RS21545 0.76 -0.5
4,775,478 - QEN71_RS21545 0.76 -0.6
4,775,478 - QEN71_RS21545 0.76 -0.4
4,775,507 + QEN71_RS21545 0.78 +0.7
4,775,507 + QEN71_RS21545 0.78 +0.6
4,775,508 - QEN71_RS21545 0.78 -1.1
4,775,508 - QEN71_RS21545 0.78 +0.2
4,775,508 - QEN71_RS21545 0.78 -1.4
4,775,508 - QEN71_RS21545 0.78 -1.5
4,775,597 + QEN71_RS21545 0.85 +0.2
4,775,597 + QEN71_RS21545 0.85 +0.3
4,775,597 + QEN71_RS21545 0.85 -0.0
4,776,015 + QEN71_RS21550 0.11 +1.6
4,776,015 + QEN71_RS21550 0.11 +0.5
4,776,015 + QEN71_RS21550 0.11 -1.0
4,776,015 + QEN71_RS21550 0.11 +0.4
4,776,016 - QEN71_RS21550 0.11 -1.2
4,776,016 - QEN71_RS21550 0.11 +0.5
4,776,016 - QEN71_RS21550 0.11 -0.2
4,776,016 - QEN71_RS21550 0.11 -0.2
4,776,243 + QEN71_RS21550 0.21 -0.4
4,776,243 + QEN71_RS21550 0.21 -0.8
4,776,243 + QEN71_RS21550 0.21 -0.2
4,776,243 + QEN71_RS21550 0.21 +0.8
4,776,243 + QEN71_RS21550 0.21 +0.0
4,776,243 + QEN71_RS21550 0.21 -0.7
4,776,243 + QEN71_RS21550 0.21 +0.9
4,776,243 + QEN71_RS21550 0.21 -1.1
4,776,244 - QEN71_RS21550 0.22 +1.4
4,776,244 - QEN71_RS21550 0.22 -1.0
4,776,244 - QEN71_RS21550 0.22 +0.0
4,776,244 - QEN71_RS21550 0.22 +0.8
4,776,244 - QEN71_RS21550 0.22 -0.0
4,776,244 - QEN71_RS21550 0.22 -0.3
4,776,447 - QEN71_RS21550 0.31 -0.5
4,776,480 + QEN71_RS21550 0.32 -0.6
4,776,480 + QEN71_RS21550 0.32 -1.2
4,776,481 - QEN71_RS21550 0.32 -0.6
4,776,481 - QEN71_RS21550 0.32 +0.1
4,776,582 + QEN71_RS21550 0.37 +0.3
4,776,582 + QEN71_RS21550 0.37 +0.5
4,776,582 + QEN71_RS21550 0.37 -2.9
4,776,582 + QEN71_RS21550 0.37 -0.8
4,776,582 + QEN71_RS21550 0.37 +0.5
4,776,582 + QEN71_RS21550 0.37 +0.3
4,776,582 + QEN71_RS21550 0.37 -0.4
4,776,582 + QEN71_RS21550 0.37 +1.0
4,776,582 + QEN71_RS21550 0.37 +0.2
4,776,582 + QEN71_RS21550 0.37 -0.5
4,776,582 + QEN71_RS21550 0.37 +0.5
4,776,582 + QEN71_RS21550 0.37 -0.1
4,776,582 + QEN71_RS21550 0.37 +1.5
4,776,582 + QEN71_RS21550 0.37 -0.2
4,776,582 + QEN71_RS21550 0.37 +1.4
4,776,582 + QEN71_RS21550 0.37 -0.3
4,776,582 + QEN71_RS21550 0.37 -0.1
4,776,582 + QEN71_RS21550 0.37 -0.6
4,776,583 - QEN71_RS21550 0.37 -0.2
4,776,583 - QEN71_RS21550 0.37 -2.2
4,776,583 - QEN71_RS21550 0.37 -0.5
4,776,583 - QEN71_RS21550 0.37 -0.2
4,776,583 - QEN71_RS21550 0.37 +0.1
4,776,583 - QEN71_RS21550 0.37 -0.5
4,776,583 - QEN71_RS21550 0.37 -1.3
4,776,583 - QEN71_RS21550 0.37 -0.6
4,776,583 - QEN71_RS21550 0.37 -0.1
4,776,583 - QEN71_RS21550 0.37 -0.8
4,776,645 + QEN71_RS21550 0.39 -0.1
4,776,646 - QEN71_RS21550 0.40 -0.2
4,776,646 - QEN71_RS21550 0.40 -0.2
4,776,646 - QEN71_RS21550 0.40 -3.1
4,776,646 - QEN71_RS21550 0.40 -0.8
4,776,656 - QEN71_RS21550 0.40 -1.1
4,776,930 + QEN71_RS21550 0.52 +0.2
4,776,930 + QEN71_RS21550 0.52 +0.8
4,776,930 + QEN71_RS21550 0.52 +0.8
4,776,930 + QEN71_RS21550 0.52 -1.2
4,776,931 - QEN71_RS21550 0.52 +0.1
4,776,931 - QEN71_RS21550 0.52 -3.7
4,776,931 - QEN71_RS21550 0.52 -0.5
4,776,931 - QEN71_RS21550 0.52 +0.2
4,777,288 - QEN71_RS21550 0.68 +0.2
4,777,288 - QEN71_RS21550 0.68 +0.2
4,777,288 - QEN71_RS21550 0.68 +0.9
4,777,296 + QEN71_RS21550 0.69 -1.1
4,777,296 + QEN71_RS21550 0.69 -1.5
4,777,297 - QEN71_RS21550 0.69 +0.0
4,777,297 - QEN71_RS21550 0.69 -0.2
4,777,297 - QEN71_RS21550 0.69 -0.6
4,777,297 - QEN71_RS21550 0.69 +0.6
4,777,297 - QEN71_RS21550 0.69 -0.5
4,777,297 - QEN71_RS21550 0.69 -0.8
4,777,455 + QEN71_RS21550 0.76 +0.2
4,777,456 - QEN71_RS21550 0.76 -1.0
4,777,456 - QEN71_RS21550 0.76 -0.7
4,777,456 - QEN71_RS21550 0.76 +0.1
4,777,456 - QEN71_RS21550 0.76 +0.9
4,777,456 - QEN71_RS21550 0.76 -1.3
4,777,926 + -2.2
4,777,927 - -0.8
4,778,039 + -0.6
4,778,039 + -0.7
4,778,039 + -2.0
4,778,039 + -1.4
4,778,039 + -0.5
4,778,040 - +0.4
4,778,040 - -0.2
4,778,040 - -0.4
4,778,040 - -1.7
4,778,076 + +0.4
4,778,076 + -1.1
4,778,076 + -0.5
4,778,076 + +0.1
4,778,076 + -0.1
4,778,076 + +0.2
4,778,076 + -0.2
4,778,076 + -0.7
4,778,077 - +0.2
4,778,077 - -1.8
4,778,077 - +0.1
4,778,077 - -0.9
4,778,077 - -0.4
4,778,077 - +0.8
4,778,077 - -0.4
4,778,077 - +0.3
4,778,077 - -0.8
4,778,077 - +0.2
4,778,155 + -0.5
4,778,155 + -0.2
4,778,155 + -1.0
4,778,155 + -0.3
4,778,155 + -0.3
4,778,155 + -0.6
4,778,155 + -0.6
4,778,155 + -0.5
4,778,155 + -0.2
4,778,155 + -0.2
4,778,155 + -0.1
4,778,155 + +0.1
4,778,155 + -0.7
4,778,155 + +0.4
4,778,155 + -0.8
4,778,156 - -1.3
4,778,156 - -1.8
4,778,156 - +1.6
4,778,156 - -0.1
4,778,156 - +0.9
4,778,156 - +1.0
4,778,156 - -0.9
4,778,156 - -0.5
4,778,156 - -0.0
4,778,156 - -1.2
4,778,156 - -0.1
4,778,156 - -0.2
4,778,156 - +0.8
4,778,156 - -0.2
4,778,156 - +0.2
4,778,156 - -1.6
4,778,156 - +0.3
4,778,156 - -0.2
4,778,156 - -0.3
4,778,156 - -1.5
4,778,308 + -0.4
4,778,308 + -0.2
4,778,309 - -0.8
4,778,309 - -0.8
4,778,581 + QEN71_RS21555 0.27 +0.6
4,778,581 + QEN71_RS21555 0.27 -0.6
4,778,582 - QEN71_RS21555 0.27 -0.8
4,778,582 - QEN71_RS21555 0.27 +0.4
4,778,681 + QEN71_RS21555 0.34 +0.5
4,778,681 + QEN71_RS21555 0.34 -0.2
4,778,681 + QEN71_RS21555 0.34 +0.0
4,778,681 + QEN71_RS21555 0.34 +0.4
4,778,681 + QEN71_RS21555 0.34 +0.6
4,778,682 - QEN71_RS21555 0.34 -2.0
4,778,682 - QEN71_RS21555 0.34 +0.1
4,778,682 - QEN71_RS21555 0.34 -0.6
4,778,876 + QEN71_RS21555 0.47 +0.4
4,778,876 + QEN71_RS21555 0.47 +0.2
4,778,876 + QEN71_RS21555 0.47 -0.8
4,778,877 - QEN71_RS21555 0.47 +0.2

Or see this region's nucleotide sequence