Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS21205

Experiment: LB_noSalt with Chloride 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS21195 and QEN71_RS21200 are separated by 67 nucleotidesQEN71_RS21200 and QEN71_RS21205 are separated by 129 nucleotidesQEN71_RS21205 and QEN71_RS21210 overlap by 2 nucleotides QEN71_RS21195: QEN71_RS21195 - YnfA family protein, at 4,698,349 to 4,698,669 _RS21195 QEN71_RS21200: QEN71_RS21200 - DUF1993 domain-containing protein, at 4,698,737 to 4,699,249 _RS21200 QEN71_RS21205: QEN71_RS21205 - hypothetical protein, at 4,699,379 to 4,699,567 _RS21205 QEN71_RS21210: QEN71_RS21210 - S53 family peptidase, at 4,699,566 to 4,701,128 _RS21210 Position (kb) 4699 4700Strain fitness (log2 ratio) -2 -1 0 1 2at 4698.403 kb on + strand, within QEN71_RS21195at 4698.403 kb on + strand, within QEN71_RS21195at 4698.404 kb on - strand, within QEN71_RS21195at 4698.447 kb on - strand, within QEN71_RS21195at 4698.447 kb on - strand, within QEN71_RS21195at 4698.489 kb on - strand, within QEN71_RS21195at 4698.489 kb on - strand, within QEN71_RS21195at 4698.523 kb on + strand, within QEN71_RS21195at 4698.523 kb on + strand, within QEN71_RS21195at 4698.523 kb on + strand, within QEN71_RS21195at 4698.523 kb on + strand, within QEN71_RS21195at 4698.523 kb on + strand, within QEN71_RS21195at 4698.523 kb on + strand, within QEN71_RS21195at 4698.524 kb on - strand, within QEN71_RS21195at 4698.524 kb on - strand, within QEN71_RS21195at 4698.524 kb on - strand, within QEN71_RS21195at 4698.524 kb on - strand, within QEN71_RS21195at 4698.524 kb on - strand, within QEN71_RS21195at 4698.532 kb on + strand, within QEN71_RS21195at 4698.532 kb on + strand, within QEN71_RS21195at 4698.532 kb on + strand, within QEN71_RS21195at 4698.532 kb on + strand, within QEN71_RS21195at 4698.533 kb on - strand, within QEN71_RS21195at 4698.544 kb on + strand, within QEN71_RS21195at 4698.544 kb on + strand, within QEN71_RS21195at 4698.544 kb on + strand, within QEN71_RS21195at 4698.544 kb on + strand, within QEN71_RS21195at 4698.544 kb on + strand, within QEN71_RS21195at 4698.544 kb on + strand, within QEN71_RS21195at 4698.544 kb on + strand, within QEN71_RS21195at 4698.544 kb on + strand, within QEN71_RS21195at 4698.544 kb on + strand, within QEN71_RS21195at 4698.545 kb on - strand, within QEN71_RS21195at 4698.545 kb on - strand, within QEN71_RS21195at 4698.545 kb on - strand, within QEN71_RS21195at 4698.545 kb on - strand, within QEN71_RS21195at 4698.545 kb on - strand, within QEN71_RS21195at 4698.545 kb on - strand, within QEN71_RS21195at 4698.695 kb on + strandat 4698.695 kb on + strandat 4698.695 kb on + strandat 4698.696 kb on - strandat 4698.742 kb on + strandat 4698.742 kb on + strandat 4698.743 kb on - strandat 4698.743 kb on - strandat 4698.788 kb on - strandat 4698.804 kb on + strand, within QEN71_RS21200at 4698.804 kb on + strand, within QEN71_RS21200at 4698.805 kb on - strand, within QEN71_RS21200at 4698.805 kb on - strand, within QEN71_RS21200at 4698.805 kb on - strand, within QEN71_RS21200at 4698.805 kb on - strand, within QEN71_RS21200at 4698.825 kb on + strand, within QEN71_RS21200at 4698.825 kb on + strand, within QEN71_RS21200at 4698.825 kb on + strand, within QEN71_RS21200at 4698.826 kb on - strand, within QEN71_RS21200at 4698.855 kb on + strand, within QEN71_RS21200at 4698.855 kb on + strand, within QEN71_RS21200at 4698.855 kb on + strand, within QEN71_RS21200at 4698.855 kb on + strand, within QEN71_RS21200at 4698.855 kb on + strand, within QEN71_RS21200at 4698.855 kb on + strand, within QEN71_RS21200at 4698.856 kb on - strand, within QEN71_RS21200at 4698.856 kb on - strand, within QEN71_RS21200at 4698.856 kb on - strand, within QEN71_RS21200at 4698.954 kb on + strand, within QEN71_RS21200at 4698.955 kb on - strand, within QEN71_RS21200at 4698.955 kb on - strand, within QEN71_RS21200at 4698.955 kb on - strand, within QEN71_RS21200at 4699.057 kb on + strand, within QEN71_RS21200at 4699.057 kb on + strand, within QEN71_RS21200at 4699.058 kb on - strand, within QEN71_RS21200at 4699.302 kb on + strandat 4699.302 kb on + strandat 4699.302 kb on + strandat 4699.302 kb on + strandat 4699.302 kb on + strandat 4699.308 kb on - strandat 4699.308 kb on - strandat 4699.340 kb on + strandat 4699.482 kb on + strand, within QEN71_RS21205at 4699.483 kb on - strand, within QEN71_RS21205at 4699.525 kb on + strand, within QEN71_RS21205at 4699.525 kb on + strand, within QEN71_RS21205at 4699.923 kb on + strand, within QEN71_RS21210at 4699.923 kb on + strand, within QEN71_RS21210at 4699.923 kb on + strand, within QEN71_RS21210at 4699.924 kb on - strand, within QEN71_RS21210at 4699.924 kb on - strand, within QEN71_RS21210at 4700.124 kb on + strand, within QEN71_RS21210at 4700.124 kb on + strand, within QEN71_RS21210at 4700.125 kb on - strand, within QEN71_RS21210at 4700.125 kb on - strand, within QEN71_RS21210at 4700.188 kb on - strand, within QEN71_RS21210at 4700.211 kb on + strand, within QEN71_RS21210at 4700.211 kb on + strand, within QEN71_RS21210at 4700.211 kb on + strand, within QEN71_RS21210at 4700.211 kb on + strand, within QEN71_RS21210at 4700.211 kb on + strand, within QEN71_RS21210at 4700.211 kb on + strand, within QEN71_RS21210at 4700.211 kb on + strand, within QEN71_RS21210at 4700.211 kb on + strand, within QEN71_RS21210at 4700.212 kb on - strand, within QEN71_RS21210at 4700.212 kb on - strand, within QEN71_RS21210at 4700.212 kb on - strand, within QEN71_RS21210at 4700.212 kb on - strand, within QEN71_RS21210at 4700.212 kb on - strand, within QEN71_RS21210at 4700.370 kb on + strand, within QEN71_RS21210at 4700.370 kb on + strand, within QEN71_RS21210at 4700.371 kb on - strand, within QEN71_RS21210at 4700.371 kb on - strand, within QEN71_RS21210at 4700.371 kb on - strand, within QEN71_RS21210at 4700.371 kb on - strand, within QEN71_RS21210at 4700.371 kb on - strand, within QEN71_RS21210at 4700.371 kb on - strand, within QEN71_RS21210at 4700.385 kb on - strand, within QEN71_RS21210at 4700.400 kb on - strand, within QEN71_RS21210

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_noSalt with Chloride 200 mM
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4,698,403 + QEN71_RS21195 0.17 +0.1
4,698,403 + QEN71_RS21195 0.17 +0.3
4,698,404 - QEN71_RS21195 0.17 -0.3
4,698,447 - QEN71_RS21195 0.31 -0.9
4,698,447 - QEN71_RS21195 0.31 +1.5
4,698,489 - QEN71_RS21195 0.44 -0.1
4,698,489 - QEN71_RS21195 0.44 -0.5
4,698,523 + QEN71_RS21195 0.54 -0.2
4,698,523 + QEN71_RS21195 0.54 -0.2
4,698,523 + QEN71_RS21195 0.54 -0.5
4,698,523 + QEN71_RS21195 0.54 -0.2
4,698,523 + QEN71_RS21195 0.54 +1.1
4,698,523 + QEN71_RS21195 0.54 -0.8
4,698,524 - QEN71_RS21195 0.55 +0.2
4,698,524 - QEN71_RS21195 0.55 +0.7
4,698,524 - QEN71_RS21195 0.55 -0.3
4,698,524 - QEN71_RS21195 0.55 -1.1
4,698,524 - QEN71_RS21195 0.55 -1.2
4,698,532 + QEN71_RS21195 0.57 -0.7
4,698,532 + QEN71_RS21195 0.57 -0.3
4,698,532 + QEN71_RS21195 0.57 -0.0
4,698,532 + QEN71_RS21195 0.57 -1.4
4,698,533 - QEN71_RS21195 0.57 -2.2
4,698,544 + QEN71_RS21195 0.61 -0.4
4,698,544 + QEN71_RS21195 0.61 +0.6
4,698,544 + QEN71_RS21195 0.61 +0.5
4,698,544 + QEN71_RS21195 0.61 -0.5
4,698,544 + QEN71_RS21195 0.61 +0.8
4,698,544 + QEN71_RS21195 0.61 -1.0
4,698,544 + QEN71_RS21195 0.61 -0.2
4,698,544 + QEN71_RS21195 0.61 -0.2
4,698,544 + QEN71_RS21195 0.61 -0.2
4,698,545 - QEN71_RS21195 0.61 -1.0
4,698,545 - QEN71_RS21195 0.61 +0.4
4,698,545 - QEN71_RS21195 0.61 -0.3
4,698,545 - QEN71_RS21195 0.61 +0.8
4,698,545 - QEN71_RS21195 0.61 -0.3
4,698,545 - QEN71_RS21195 0.61 +0.4
4,698,695 + -0.6
4,698,695 + -0.7
4,698,695 + +0.1
4,698,696 - -0.3
4,698,742 + +0.7
4,698,742 + +1.0
4,698,743 - -1.1
4,698,743 - +0.7
4,698,788 - -0.9
4,698,804 + QEN71_RS21200 0.13 -0.2
4,698,804 + QEN71_RS21200 0.13 -1.4
4,698,805 - QEN71_RS21200 0.13 -0.2
4,698,805 - QEN71_RS21200 0.13 -0.3
4,698,805 - QEN71_RS21200 0.13 +0.1
4,698,805 - QEN71_RS21200 0.13 -1.0
4,698,825 + QEN71_RS21200 0.17 +0.4
4,698,825 + QEN71_RS21200 0.17 -0.6
4,698,825 + QEN71_RS21200 0.17 +0.7
4,698,826 - QEN71_RS21200 0.17 +0.6
4,698,855 + QEN71_RS21200 0.23 -0.7
4,698,855 + QEN71_RS21200 0.23 -0.9
4,698,855 + QEN71_RS21200 0.23 -0.5
4,698,855 + QEN71_RS21200 0.23 +0.3
4,698,855 + QEN71_RS21200 0.23 -2.2
4,698,855 + QEN71_RS21200 0.23 -0.3
4,698,856 - QEN71_RS21200 0.23 -0.1
4,698,856 - QEN71_RS21200 0.23 -0.4
4,698,856 - QEN71_RS21200 0.23 -1.8
4,698,954 + QEN71_RS21200 0.42 +1.5
4,698,955 - QEN71_RS21200 0.42 -1.0
4,698,955 - QEN71_RS21200 0.42 +0.3
4,698,955 - QEN71_RS21200 0.42 -0.5
4,699,057 + QEN71_RS21200 0.62 -0.7
4,699,057 + QEN71_RS21200 0.62 +0.7
4,699,058 - QEN71_RS21200 0.63 -0.8
4,699,302 + -1.0
4,699,302 + +0.1
4,699,302 + -0.7
4,699,302 + +0.5
4,699,302 + -0.6
4,699,308 - +0.5
4,699,308 - +0.6
4,699,340 + -1.2
4,699,482 + QEN71_RS21205 0.54 -2.2
4,699,483 - QEN71_RS21205 0.55 -0.3
4,699,525 + QEN71_RS21205 0.77 +0.3
4,699,525 + QEN71_RS21205 0.77 -2.1
4,699,923 + QEN71_RS21210 0.23 -0.1
4,699,923 + QEN71_RS21210 0.23 -1.0
4,699,923 + QEN71_RS21210 0.23 +0.0
4,699,924 - QEN71_RS21210 0.23 +0.2
4,699,924 - QEN71_RS21210 0.23 -0.4
4,700,124 + QEN71_RS21210 0.36 +0.3
4,700,124 + QEN71_RS21210 0.36 -0.9
4,700,125 - QEN71_RS21210 0.36 -0.1
4,700,125 - QEN71_RS21210 0.36 -0.5
4,700,188 - QEN71_RS21210 0.40 -2.0
4,700,211 + QEN71_RS21210 0.41 -0.0
4,700,211 + QEN71_RS21210 0.41 -0.4
4,700,211 + QEN71_RS21210 0.41 +1.1
4,700,211 + QEN71_RS21210 0.41 -0.6
4,700,211 + QEN71_RS21210 0.41 -0.5
4,700,211 + QEN71_RS21210 0.41 +0.6
4,700,211 + QEN71_RS21210 0.41 -0.5
4,700,211 + QEN71_RS21210 0.41 +0.6
4,700,212 - QEN71_RS21210 0.41 -2.1
4,700,212 - QEN71_RS21210 0.41 +0.2
4,700,212 - QEN71_RS21210 0.41 +0.1
4,700,212 - QEN71_RS21210 0.41 +0.7
4,700,212 - QEN71_RS21210 0.41 +0.0
4,700,370 + QEN71_RS21210 0.51 +0.4
4,700,370 + QEN71_RS21210 0.51 -0.1
4,700,371 - QEN71_RS21210 0.52 -0.8
4,700,371 - QEN71_RS21210 0.52 -1.2
4,700,371 - QEN71_RS21210 0.52 +0.4
4,700,371 - QEN71_RS21210 0.52 -0.7
4,700,371 - QEN71_RS21210 0.52 +1.8
4,700,371 - QEN71_RS21210 0.52 +1.0
4,700,385 - QEN71_RS21210 0.52 +0.8
4,700,400 - QEN71_RS21210 0.53 -0.6

Or see this region's nucleotide sequence