Experiment: LB_noSalt with Chloride 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS21055 and QEN71_RS21060 are separated by 51 nucleotides QEN71_RS21060 and QEN71_RS21065 are separated by 135 nucleotides QEN71_RS21065 and QEN71_RS21070 are separated by 493 nucleotides
QEN71_RS21055: QEN71_RS21055 - amidase family protein, at 4,669,991 to 4,671,391
_RS21055
QEN71_RS21060: QEN71_RS21060 - universal stress protein, at 4,671,443 to 4,671,892
_RS21060
QEN71_RS21065: QEN71_RS21065 - sigma factor-like helix-turn-helix DNA-binding protein, at 4,672,028 to 4,672,435
_RS21065
QEN71_RS21070: QEN71_RS21070 - aldehyde dehydrogenase, at 4,672,929 to 4,674,398
_RS21070
Position (kb) 4672
4673 Strain fitness (log2 ratio) -1
0
1 at 4671.067 kb on + strand, within QEN71_RS21055 at 4671.068 kb on - strand, within QEN71_RS21055 at 4671.068 kb on - strand, within QEN71_RS21055 at 4671.107 kb on + strand, within QEN71_RS21055 at 4671.107 kb on + strand, within QEN71_RS21055 at 4671.107 kb on + strand, within QEN71_RS21055 at 4671.442 kb on - strand at 4671.444 kb on + strand at 4671.444 kb on + strand at 4671.444 kb on + strand at 4671.445 kb on - strand at 4671.624 kb on + strand, within QEN71_RS21060 at 4671.671 kb on + strand, within QEN71_RS21060 at 4671.672 kb on - strand, within QEN71_RS21060 at 4671.861 kb on + strand at 4672.161 kb on + strand, within QEN71_RS21065 at 4672.544 kb on - strand at 4672.764 kb on - strand at 4672.798 kb on - strand at 4672.800 kb on - strand at 4672.877 kb on - strand at 4673.166 kb on + strand, within QEN71_RS21070 at 4673.167 kb on - strand, within QEN71_RS21070
Per-strain Table
Position Strand Gene LocusTag Fraction LB_noSalt with Chloride 200 mM remove 4,671,067 + QEN71_RS21055 0.77 -0.2 4,671,068 - QEN71_RS21055 0.77 +0.8 4,671,068 - QEN71_RS21055 0.77 +0.8 4,671,107 + QEN71_RS21055 0.80 +0.0 4,671,107 + QEN71_RS21055 0.80 -0.2 4,671,107 + QEN71_RS21055 0.80 +0.3 4,671,442 - -0.3 4,671,444 + -0.7 4,671,444 + -0.9 4,671,444 + +0.2 4,671,445 - +0.4 4,671,624 + QEN71_RS21060 0.40 +0.2 4,671,671 + QEN71_RS21060 0.51 -0.1 4,671,672 - QEN71_RS21060 0.51 -0.8 4,671,861 + -0.5 4,672,161 + QEN71_RS21065 0.33 -1.5 4,672,544 - +0.0 4,672,764 - +0.4 4,672,798 - -0.5 4,672,800 - -1.6 4,672,877 - -0.5 4,673,166 + QEN71_RS21070 0.16 +1.5 4,673,167 - QEN71_RS21070 0.16 -0.8
Or see this region's nucleotide sequence