Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS17430

Experiment: LB_noSalt with Chloride 200 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntQEN71_RS17425 and QEN71_RS17430 are separated by 12 nucleotidesQEN71_RS17430 and QEN71_RS17435 are separated by 242 nucleotidesQEN71_RS17435 and QEN71_RS17440 are separated by 19 nucleotides QEN71_RS17425: QEN71_RS17425 - hybrid sensor histidine kinase/response regulator, at 3,870,333 to 3,872,345 _RS17425 QEN71_RS17430: QEN71_RS17430 - response regulator transcription factor, at 3,872,358 to 3,872,933 _RS17430 QEN71_RS17435: QEN71_RS17435 - response regulator transcription factor, at 3,873,176 to 3,873,760 _RS17435 QEN71_RS17440: QEN71_RS17440 - Hpt domain-containing protein, at 3,873,780 to 3,874,079 _RS17440 Position (kb) 3872 3873Strain fitness (log2 ratio) -2 -1 0 1at 3871.499 kb on + strand, within QEN71_RS17425at 3871.499 kb on + strand, within QEN71_RS17425at 3871.499 kb on + strand, within QEN71_RS17425at 3871.500 kb on - strand, within QEN71_RS17425at 3871.500 kb on - strand, within QEN71_RS17425at 3871.500 kb on - strand, within QEN71_RS17425at 3871.732 kb on - strand, within QEN71_RS17425at 3871.761 kb on + strand, within QEN71_RS17425at 3871.761 kb on + strand, within QEN71_RS17425at 3871.762 kb on - strand, within QEN71_RS17425at 3871.762 kb on - strand, within QEN71_RS17425at 3872.246 kb on - strandat 3872.444 kb on - strand, within QEN71_RS17430at 3872.444 kb on - strand, within QEN71_RS17430at 3872.516 kb on - strand, within QEN71_RS17430at 3873.082 kb on + strandat 3873.104 kb on + strandat 3873.647 kb on - strand, within QEN71_RS17435at 3873.675 kb on - strand, within QEN71_RS17435at 3873.850 kb on + strand, within QEN71_RS17440

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB_noSalt with Chloride 200 mM
remove
3,871,499 + QEN71_RS17425 0.58 -0.2
3,871,499 + QEN71_RS17425 0.58 -0.2
3,871,499 + QEN71_RS17425 0.58 +0.8
3,871,500 - QEN71_RS17425 0.58 +0.8
3,871,500 - QEN71_RS17425 0.58 -1.2
3,871,500 - QEN71_RS17425 0.58 -0.6
3,871,732 - QEN71_RS17425 0.69 +0.7
3,871,761 + QEN71_RS17425 0.71 -0.4
3,871,761 + QEN71_RS17425 0.71 -0.7
3,871,762 - QEN71_RS17425 0.71 +0.4
3,871,762 - QEN71_RS17425 0.71 -2.1
3,872,246 - +0.5
3,872,444 - QEN71_RS17430 0.15 -0.1
3,872,444 - QEN71_RS17430 0.15 -0.4
3,872,516 - QEN71_RS17430 0.27 -1.1
3,873,082 + -0.4
3,873,104 + +0.1
3,873,647 - QEN71_RS17435 0.81 +0.7
3,873,675 - QEN71_RS17435 0.85 -0.4
3,873,850 + QEN71_RS17440 0.23 +0.7

Or see this region's nucleotide sequence