Experiment: LB_noSalt with Chloride 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS16835 and QEN71_RS16840 are separated by 40 nucleotides QEN71_RS16840 and QEN71_RS16845 overlap by 4 nucleotides
QEN71_RS16835: QEN71_RS16835 - L-arabinose ABC transporter permease AraH, at 3,729,784 to 3,730,800
_RS16835
QEN71_RS16840: QEN71_RS16840 - M55 family metallopeptidase, at 3,730,841 to 3,731,665
_RS16840
QEN71_RS16845: QEN71_RS16845 - P1 family peptidase, at 3,731,662 to 3,732,720
_RS16845
Position (kb)
3730
3731
3732 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3730.116 kb on + strand, within QEN71_RS16835 at 3730.116 kb on + strand, within QEN71_RS16835 at 3730.116 kb on + strand, within QEN71_RS16835 at 3730.196 kb on - strand, within QEN71_RS16835 at 3730.196 kb on - strand, within QEN71_RS16835 at 3730.434 kb on + strand, within QEN71_RS16835 at 3730.434 kb on + strand, within QEN71_RS16835 at 3730.435 kb on - strand, within QEN71_RS16835 at 3730.468 kb on - strand, within QEN71_RS16835 at 3730.720 kb on + strand at 3730.720 kb on + strand at 3730.721 kb on - strand at 3730.721 kb on - strand at 3730.721 kb on - strand at 3730.721 kb on - strand at 3730.721 kb on - strand at 3730.726 kb on + strand at 3730.727 kb on - strand at 3730.852 kb on + strand at 3730.852 kb on + strand at 3731.232 kb on + strand, within QEN71_RS16840 at 3731.233 kb on - strand, within QEN71_RS16840 at 3731.254 kb on - strand, within QEN71_RS16840 at 3731.320 kb on + strand, within QEN71_RS16840 at 3731.320 kb on + strand, within QEN71_RS16840 at 3731.320 kb on + strand, within QEN71_RS16840 at 3731.320 kb on + strand, within QEN71_RS16840 at 3731.388 kb on + strand, within QEN71_RS16840 at 3731.584 kb on - strand at 3731.658 kb on - strand at 3731.751 kb on + strand at 3731.752 kb on - strand at 3731.754 kb on + strand at 3731.754 kb on + strand at 3731.927 kb on + strand, within QEN71_RS16845 at 3731.927 kb on + strand, within QEN71_RS16845 at 3731.927 kb on + strand, within QEN71_RS16845 at 3731.928 kb on - strand, within QEN71_RS16845 at 3732.291 kb on - strand, within QEN71_RS16845 at 3732.450 kb on + strand, within QEN71_RS16845 at 3732.451 kb on - strand, within QEN71_RS16845 at 3732.564 kb on - strand, within QEN71_RS16845 at 3732.586 kb on + strand, within QEN71_RS16845 at 3732.586 kb on + strand, within QEN71_RS16845
Per-strain Table
Position Strand Gene LocusTag Fraction LB_noSalt with Chloride 200 mM remove 3,730,116 + QEN71_RS16835 0.33 -0.1 3,730,116 + QEN71_RS16835 0.33 +0.7 3,730,116 + QEN71_RS16835 0.33 -0.9 3,730,196 - QEN71_RS16835 0.41 +0.5 3,730,196 - QEN71_RS16835 0.41 -1.9 3,730,434 + QEN71_RS16835 0.64 +0.1 3,730,434 + QEN71_RS16835 0.64 +1.3 3,730,435 - QEN71_RS16835 0.64 +0.9 3,730,468 - QEN71_RS16835 0.67 -1.3 3,730,720 + -1.1 3,730,720 + +0.3 3,730,721 - +1.7 3,730,721 - +0.3 3,730,721 - -0.6 3,730,721 - -1.2 3,730,721 - -0.4 3,730,726 + -0.5 3,730,727 - -0.8 3,730,852 + +0.7 3,730,852 + -0.8 3,731,232 + QEN71_RS16840 0.47 -0.7 3,731,233 - QEN71_RS16840 0.48 -0.2 3,731,254 - QEN71_RS16840 0.50 -1.1 3,731,320 + QEN71_RS16840 0.58 -1.1 3,731,320 + QEN71_RS16840 0.58 -0.2 3,731,320 + QEN71_RS16840 0.58 -0.2 3,731,320 + QEN71_RS16840 0.58 +0.3 3,731,388 + QEN71_RS16840 0.66 -0.5 3,731,584 - -3.1 3,731,658 - -0.4 3,731,751 + -0.1 3,731,752 - +0.1 3,731,754 + -0.1 3,731,754 + -0.3 3,731,927 + QEN71_RS16845 0.25 -0.5 3,731,927 + QEN71_RS16845 0.25 +1.3 3,731,927 + QEN71_RS16845 0.25 -1.5 3,731,928 - QEN71_RS16845 0.25 +0.7 3,732,291 - QEN71_RS16845 0.59 -0.1 3,732,450 + QEN71_RS16845 0.74 +0.0 3,732,451 - QEN71_RS16845 0.75 -1.1 3,732,564 - QEN71_RS16845 0.85 -0.2 3,732,586 + QEN71_RS16845 0.87 +0.2 3,732,586 + QEN71_RS16845 0.87 +0.0
Or see this region's nucleotide sequence