Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS15300

Experiment: LB_noSalt with Chloride 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS15290 and QEN71_RS15295 are separated by 51 nucleotidesQEN71_RS15295 and QEN71_RS15300 are separated by 26 nucleotidesQEN71_RS15300 and QEN71_RS15305 are separated by 165 nucleotidesQEN71_RS15305 and QEN71_RS15310 overlap by 1 nucleotides QEN71_RS15290: QEN71_RS15290 - ABC transporter substrate-binding protein, at 3,404,123 to 3,405,139 _RS15290 QEN71_RS15295: QEN71_RS15295 - ABC transporter ATP-binding protein, at 3,405,191 to 3,405,988 _RS15295 QEN71_RS15300: QEN71_RS15300 - ABC transporter permease, at 3,406,015 to 3,406,878 _RS15300 QEN71_RS15305: QEN71_RS15305 - heavy metal response regulator transcription factor, at 3,407,044 to 3,407,721 _RS15305 QEN71_RS15310: QEN71_RS15310 - heavy metal sensor histidine kinase, at 3,407,721 to 3,409,172 _RS15310 Position (kb) 3406 3407Strain fitness (log2 ratio) -2 -1 0 1 2at 3405.076 kb on + strandat 3405.077 kb on - strandat 3405.095 kb on + strandat 3405.137 kb on + strandat 3405.240 kb on + strandat 3405.240 kb on + strandat 3405.524 kb on + strand, within QEN71_RS15295at 3405.872 kb on + strand, within QEN71_RS15295at 3405.986 kb on + strandat 3405.995 kb on + strandat 3406.020 kb on + strandat 3406.023 kb on + strandat 3406.024 kb on - strandat 3406.024 kb on - strandat 3406.561 kb on + strand, within QEN71_RS15300at 3406.561 kb on + strand, within QEN71_RS15300at 3406.822 kb on + strandat 3406.870 kb on - strandat 3406.908 kb on + strandat 3406.908 kb on + strandat 3406.909 kb on - strandat 3406.975 kb on - strandat 3406.975 kb on - strandat 3407.060 kb on + strandat 3407.086 kb on + strandat 3407.154 kb on + strand, within QEN71_RS15305at 3407.155 kb on - strand, within QEN71_RS15305at 3407.177 kb on - strand, within QEN71_RS15305at 3407.177 kb on - strand, within QEN71_RS15305at 3407.332 kb on + strand, within QEN71_RS15305at 3407.446 kb on - strand, within QEN71_RS15305at 3407.598 kb on + strand, within QEN71_RS15305at 3407.599 kb on - strand, within QEN71_RS15305at 3407.692 kb on + strandat 3407.693 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_noSalt with Chloride 200 mM
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3,405,076 + +0.2
3,405,077 - -0.0
3,405,095 + -0.3
3,405,137 + -0.7
3,405,240 + +0.6
3,405,240 + -0.4
3,405,524 + QEN71_RS15295 0.42 -0.7
3,405,872 + QEN71_RS15295 0.85 +0.3
3,405,986 + -0.3
3,405,995 + +0.7
3,406,020 + -0.5
3,406,023 + +0.6
3,406,024 - -0.6
3,406,024 - +0.0
3,406,561 + QEN71_RS15300 0.63 -1.7
3,406,561 + QEN71_RS15300 0.63 -1.2
3,406,822 + +0.0
3,406,870 - -0.2
3,406,908 + -0.4
3,406,908 + +0.8
3,406,909 - +0.9
3,406,975 - +0.5
3,406,975 - -0.1
3,407,060 + +0.5
3,407,086 + +0.6
3,407,154 + QEN71_RS15305 0.16 -0.7
3,407,155 - QEN71_RS15305 0.16 -0.9
3,407,177 - QEN71_RS15305 0.20 -0.9
3,407,177 - QEN71_RS15305 0.20 -0.2
3,407,332 + QEN71_RS15305 0.42 -1.5
3,407,446 - QEN71_RS15305 0.59 -1.1
3,407,598 + QEN71_RS15305 0.82 -2.1
3,407,599 - QEN71_RS15305 0.82 +1.9
3,407,692 + -0.1
3,407,693 - +0.6

Or see this region's nucleotide sequence