Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS15020

Experiment: LB_noSalt with Chloride 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS15010 and QEN71_RS15015 are separated by 74 nucleotidesQEN71_RS15015 and QEN71_RS15020 are separated by 1 nucleotidesQEN71_RS15020 and QEN71_RS15025 are separated by 177 nucleotides QEN71_RS15010: QEN71_RS15010 - glycosyltransferase family 4 protein, at 3,341,634 to 3,342,704 _RS15010 QEN71_RS15015: QEN71_RS15015 - glycosyltransferase family 9 protein, at 3,342,779 to 3,343,696 _RS15015 QEN71_RS15020: QEN71_RS15020 - glycosyltransferase family 9 protein, at 3,343,698 to 3,344,600 _RS15020 QEN71_RS15025: QEN71_RS15025 - hypothetical protein, at 3,344,778 to 3,345,629 _RS15025 Position (kb) 3343 3344 3345Strain fitness (log2 ratio) -1 0 1at 3342.806 kb on + strandat 3342.806 kb on + strandat 3343.030 kb on - strand, within QEN71_RS15015at 3343.144 kb on - strand, within QEN71_RS15015at 3343.407 kb on + strand, within QEN71_RS15015at 3343.884 kb on - strand, within QEN71_RS15020at 3344.708 kb on + strandat 3344.709 kb on - strandat 3344.709 kb on - strandat 3344.709 kb on - strandat 3344.803 kb on + strandat 3344.804 kb on - strandat 3345.059 kb on - strand, within QEN71_RS15025at 3345.213 kb on + strand, within QEN71_RS15025at 3345.213 kb on + strand, within QEN71_RS15025at 3345.497 kb on - strand, within QEN71_RS15025at 3345.504 kb on - strand, within QEN71_RS15025

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_noSalt with Chloride 200 mM
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3,342,806 + -0.5
3,342,806 + -1.6
3,343,030 - QEN71_RS15015 0.27 +0.1
3,343,144 - QEN71_RS15015 0.40 +1.5
3,343,407 + QEN71_RS15015 0.68 +0.1
3,343,884 - QEN71_RS15020 0.21 -1.2
3,344,708 + -0.9
3,344,709 - -1.0
3,344,709 - -0.5
3,344,709 - -0.4
3,344,803 + +0.4
3,344,804 - -1.1
3,345,059 - QEN71_RS15025 0.33 -1.4
3,345,213 + QEN71_RS15025 0.51 +0.2
3,345,213 + QEN71_RS15025 0.51 -0.1
3,345,497 - QEN71_RS15025 0.84 -0.5
3,345,504 - QEN71_RS15025 0.85 +1.3

Or see this region's nucleotide sequence