Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS10610

Experiment: LB_noSalt with Chloride 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS10605 and QEN71_RS10610 are separated by 80 nucleotidesQEN71_RS10610 and QEN71_RS10615 are separated by 169 nucleotides QEN71_RS10605: QEN71_RS10605 - 2OG-Fe(II) oxygenase, at 2,352,625 to 2,353,509 _RS10605 QEN71_RS10610: QEN71_RS10610 - nuclear transport factor 2 family protein, at 2,353,590 to 2,354,063 _RS10610 QEN71_RS10615: QEN71_RS10615 - patatin-like phospholipase family protein, at 2,354,233 to 2,355,516 _RS10615 Position (kb) 2353 2354 2355Strain fitness (log2 ratio) -3 -2 -1 0 1at 2352.632 kb on + strandat 2352.632 kb on + strandat 2352.632 kb on + strandat 2352.632 kb on + strandat 2352.632 kb on + strandat 2352.633 kb on - strandat 2352.633 kb on - strandat 2352.633 kb on - strandat 2352.633 kb on - strandat 2352.633 kb on - strandat 2352.633 kb on - strandat 2352.737 kb on + strand, within QEN71_RS10605at 2352.747 kb on - strand, within QEN71_RS10605at 2352.830 kb on + strand, within QEN71_RS10605at 2352.830 kb on + strand, within QEN71_RS10605at 2352.870 kb on + strand, within QEN71_RS10605at 2352.870 kb on + strand, within QEN71_RS10605at 2352.870 kb on + strand, within QEN71_RS10605at 2352.870 kb on + strand, within QEN71_RS10605at 2352.871 kb on - strand, within QEN71_RS10605at 2352.871 kb on - strand, within QEN71_RS10605at 2352.871 kb on - strand, within QEN71_RS10605at 2352.871 kb on - strand, within QEN71_RS10605at 2352.871 kb on - strand, within QEN71_RS10605at 2352.871 kb on - strand, within QEN71_RS10605at 2352.871 kb on - strand, within QEN71_RS10605at 2352.871 kb on - strand, within QEN71_RS10605at 2352.905 kb on + strand, within QEN71_RS10605at 2352.906 kb on - strand, within QEN71_RS10605at 2352.941 kb on + strand, within QEN71_RS10605at 2352.941 kb on + strand, within QEN71_RS10605at 2352.941 kb on + strand, within QEN71_RS10605at 2352.941 kb on + strand, within QEN71_RS10605at 2352.942 kb on - strand, within QEN71_RS10605at 2352.942 kb on - strand, within QEN71_RS10605at 2352.942 kb on - strand, within QEN71_RS10605at 2352.942 kb on - strand, within QEN71_RS10605at 2352.942 kb on - strand, within QEN71_RS10605at 2352.942 kb on - strand, within QEN71_RS10605at 2352.942 kb on - strand, within QEN71_RS10605at 2353.278 kb on - strand, within QEN71_RS10605at 2353.283 kb on + strand, within QEN71_RS10605at 2353.283 kb on + strand, within QEN71_RS10605at 2353.283 kb on + strand, within QEN71_RS10605at 2353.283 kb on + strand, within QEN71_RS10605at 2353.284 kb on - strand, within QEN71_RS10605at 2353.284 kb on - strand, within QEN71_RS10605at 2353.284 kb on - strand, within QEN71_RS10605at 2353.284 kb on - strand, within QEN71_RS10605at 2353.547 kb on + strandat 2353.547 kb on + strandat 2353.569 kb on + strandat 2353.570 kb on - strandat 2353.580 kb on + strandat 2353.581 kb on - strandat 2353.581 kb on - strandat 2353.816 kb on + strand, within QEN71_RS10610at 2353.816 kb on + strand, within QEN71_RS10610at 2353.817 kb on - strand, within QEN71_RS10610at 2353.817 kb on - strand, within QEN71_RS10610at 2353.817 kb on - strand, within QEN71_RS10610at 2353.817 kb on - strand, within QEN71_RS10610at 2354.027 kb on - strandat 2354.027 kb on - strandat 2354.074 kb on + strandat 2354.074 kb on + strandat 2354.074 kb on + strandat 2354.074 kb on + strandat 2354.074 kb on + strandat 2354.074 kb on + strandat 2354.074 kb on + strandat 2354.074 kb on + strandat 2354.074 kb on + strandat 2354.074 kb on + strandat 2354.075 kb on - strandat 2354.075 kb on - strandat 2354.075 kb on - strandat 2354.075 kb on - strandat 2354.186 kb on + strandat 2354.186 kb on + strandat 2354.186 kb on + strandat 2354.186 kb on + strandat 2354.187 kb on - strandat 2354.187 kb on - strandat 2354.187 kb on - strandat 2354.221 kb on + strandat 2354.221 kb on + strandat 2354.221 kb on + strandat 2354.222 kb on - strandat 2354.222 kb on - strandat 2354.222 kb on - strandat 2354.222 kb on - strandat 2354.222 kb on - strandat 2354.235 kb on - strandat 2354.679 kb on + strand, within QEN71_RS10615at 2354.680 kb on - strand, within QEN71_RS10615at 2354.680 kb on - strand, within QEN71_RS10615at 2354.744 kb on + strand, within QEN71_RS10615at 2354.843 kb on + strand, within QEN71_RS10615at 2354.909 kb on + strand, within QEN71_RS10615at 2354.909 kb on + strand, within QEN71_RS10615at 2354.909 kb on + strand, within QEN71_RS10615at 2354.909 kb on - strand, within QEN71_RS10615at 2354.910 kb on - strand, within QEN71_RS10615at 2354.960 kb on + strand, within QEN71_RS10615at 2354.961 kb on - strand, within QEN71_RS10615at 2354.961 kb on - strand, within QEN71_RS10615

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_noSalt with Chloride 200 mM
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2,352,632 + -0.1
2,352,632 + -0.7
2,352,632 + +0.9
2,352,632 + -0.0
2,352,632 + +0.9
2,352,633 - -0.3
2,352,633 - -0.4
2,352,633 - -1.3
2,352,633 - +0.0
2,352,633 - +0.1
2,352,633 - -0.7
2,352,737 + QEN71_RS10605 0.13 -0.6
2,352,747 - QEN71_RS10605 0.14 -0.6
2,352,830 + QEN71_RS10605 0.23 -0.1
2,352,830 + QEN71_RS10605 0.23 +0.1
2,352,870 + QEN71_RS10605 0.28 +0.5
2,352,870 + QEN71_RS10605 0.28 +0.3
2,352,870 + QEN71_RS10605 0.28 -1.4
2,352,870 + QEN71_RS10605 0.28 -0.5
2,352,871 - QEN71_RS10605 0.28 -0.1
2,352,871 - QEN71_RS10605 0.28 -0.4
2,352,871 - QEN71_RS10605 0.28 -1.2
2,352,871 - QEN71_RS10605 0.28 +1.6
2,352,871 - QEN71_RS10605 0.28 -0.7
2,352,871 - QEN71_RS10605 0.28 -0.4
2,352,871 - QEN71_RS10605 0.28 +0.1
2,352,871 - QEN71_RS10605 0.28 -1.6
2,352,905 + QEN71_RS10605 0.32 -0.3
2,352,906 - QEN71_RS10605 0.32 +0.0
2,352,941 + QEN71_RS10605 0.36 +0.4
2,352,941 + QEN71_RS10605 0.36 +0.1
2,352,941 + QEN71_RS10605 0.36 -2.8
2,352,941 + QEN71_RS10605 0.36 -0.7
2,352,942 - QEN71_RS10605 0.36 -1.0
2,352,942 - QEN71_RS10605 0.36 +0.9
2,352,942 - QEN71_RS10605 0.36 +0.2
2,352,942 - QEN71_RS10605 0.36 -0.5
2,352,942 - QEN71_RS10605 0.36 -0.9
2,352,942 - QEN71_RS10605 0.36 -1.2
2,352,942 - QEN71_RS10605 0.36 +0.9
2,353,278 - QEN71_RS10605 0.74 -0.2
2,353,283 + QEN71_RS10605 0.74 -0.1
2,353,283 + QEN71_RS10605 0.74 -0.9
2,353,283 + QEN71_RS10605 0.74 +0.7
2,353,283 + QEN71_RS10605 0.74 +0.5
2,353,284 - QEN71_RS10605 0.74 -1.0
2,353,284 - QEN71_RS10605 0.74 +0.6
2,353,284 - QEN71_RS10605 0.74 +0.1
2,353,284 - QEN71_RS10605 0.74 -0.8
2,353,547 + -0.5
2,353,547 + -0.1
2,353,569 + +0.6
2,353,570 - -1.3
2,353,580 + +0.4
2,353,581 - -0.2
2,353,581 - -0.6
2,353,816 + QEN71_RS10610 0.48 -0.1
2,353,816 + QEN71_RS10610 0.48 +0.1
2,353,817 - QEN71_RS10610 0.48 +0.5
2,353,817 - QEN71_RS10610 0.48 -1.3
2,353,817 - QEN71_RS10610 0.48 -3.2
2,353,817 - QEN71_RS10610 0.48 -0.3
2,354,027 - -0.3
2,354,027 - -2.4
2,354,074 + -0.1
2,354,074 + +0.2
2,354,074 + +0.6
2,354,074 + +0.2
2,354,074 + -0.6
2,354,074 + -1.4
2,354,074 + +0.7
2,354,074 + +0.5
2,354,074 + -1.3
2,354,074 + -0.0
2,354,075 - +0.2
2,354,075 - +0.1
2,354,075 - -1.4
2,354,075 - -0.6
2,354,186 + -0.1
2,354,186 + +0.6
2,354,186 + -0.2
2,354,186 + -1.3
2,354,187 - +0.2
2,354,187 - +1.0
2,354,187 - +0.5
2,354,221 + -0.3
2,354,221 + +0.2
2,354,221 + -1.6
2,354,222 - +0.9
2,354,222 - +1.0
2,354,222 - -0.5
2,354,222 - +1.1
2,354,222 - +0.2
2,354,235 - -0.7
2,354,679 + QEN71_RS10615 0.35 -0.6
2,354,680 - QEN71_RS10615 0.35 -0.4
2,354,680 - QEN71_RS10615 0.35 -1.6
2,354,744 + QEN71_RS10615 0.40 +0.7
2,354,843 + QEN71_RS10615 0.48 -0.2
2,354,909 + QEN71_RS10615 0.53 -0.7
2,354,909 + QEN71_RS10615 0.53 +0.6
2,354,909 + QEN71_RS10615 0.53 +1.4
2,354,909 - QEN71_RS10615 0.53 +1.0
2,354,910 - QEN71_RS10615 0.53 +0.0
2,354,960 + QEN71_RS10615 0.57 -0.1
2,354,961 - QEN71_RS10615 0.57 -0.0
2,354,961 - QEN71_RS10615 0.57 +0.2

Or see this region's nucleotide sequence