Experiment: LB_noSalt with Chloride 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS06355 and QEN71_RS06360 are separated by 99 nucleotides QEN71_RS06360 and QEN71_RS06365 overlap by 1 nucleotides QEN71_RS06365 and QEN71_RS06370 are separated by 97 nucleotides
QEN71_RS06355: QEN71_RS06355 - succinyl-diaminopimelate desuccinylase, at 1,407,191 to 1,408,330
_RS06355
QEN71_RS06360: QEN71_RS06360 - ArsC family reductase, at 1,408,430 to 1,408,795
_RS06360
QEN71_RS06365: QEN71_RS06365 - 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase, at 1,408,795 to 1,409,622
_RS06365
QEN71_RS06370: QEN71_RS06370 - succinyldiaminopimelate transaminase, at 1,409,720 to 1,410,937
_RS06370
Position (kb)
1408
1409 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1407.474 kb on + strand, within QEN71_RS06355 at 1407.474 kb on + strand, within QEN71_RS06355 at 1407.634 kb on + strand, within QEN71_RS06355 at 1407.634 kb on + strand, within QEN71_RS06355 at 1407.635 kb on - strand, within QEN71_RS06355 at 1407.635 kb on - strand, within QEN71_RS06355 at 1407.635 kb on - strand, within QEN71_RS06355 at 1407.645 kb on + strand, within QEN71_RS06355 at 1407.645 kb on + strand, within QEN71_RS06355 at 1407.645 kb on + strand, within QEN71_RS06355 at 1407.645 kb on + strand, within QEN71_RS06355 at 1407.645 kb on + strand, within QEN71_RS06355 at 1407.646 kb on - strand, within QEN71_RS06355 at 1407.646 kb on - strand, within QEN71_RS06355 at 1407.646 kb on - strand, within QEN71_RS06355 at 1408.041 kb on + strand, within QEN71_RS06355 at 1408.041 kb on + strand, within QEN71_RS06355 at 1408.041 kb on + strand, within QEN71_RS06355 at 1408.042 kb on - strand, within QEN71_RS06355 at 1408.042 kb on - strand, within QEN71_RS06355 at 1408.309 kb on + strand at 1408.449 kb on + strand at 1408.449 kb on + strand at 1408.449 kb on + strand at 1408.449 kb on + strand at 1408.450 kb on - strand at 1408.450 kb on - strand at 1408.450 kb on - strand at 1408.559 kb on - strand, within QEN71_RS06360 at 1408.767 kb on + strand at 1408.768 kb on - strand at 1408.768 kb on - strand at 1408.768 kb on - strand at 1408.768 kb on - strand at 1409.722 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB_noSalt with Chloride 200 mM remove 1,407,474 + QEN71_RS06355 0.25 -1.1 1,407,474 + QEN71_RS06355 0.25 -1.9 1,407,634 + QEN71_RS06355 0.39 -1.8 1,407,634 + QEN71_RS06355 0.39 -1.5 1,407,635 - QEN71_RS06355 0.39 -0.9 1,407,635 - QEN71_RS06355 0.39 -0.6 1,407,635 - QEN71_RS06355 0.39 -1.1 1,407,645 + QEN71_RS06355 0.40 -0.8 1,407,645 + QEN71_RS06355 0.40 -2.3 1,407,645 + QEN71_RS06355 0.40 -0.6 1,407,645 + QEN71_RS06355 0.40 -0.1 1,407,645 + QEN71_RS06355 0.40 -3.4 1,407,646 - QEN71_RS06355 0.40 -2.4 1,407,646 - QEN71_RS06355 0.40 -2.5 1,407,646 - QEN71_RS06355 0.40 -0.8 1,408,041 + QEN71_RS06355 0.75 -0.5 1,408,041 + QEN71_RS06355 0.75 -2.1 1,408,041 + QEN71_RS06355 0.75 -1.3 1,408,042 - QEN71_RS06355 0.75 -1.5 1,408,042 - QEN71_RS06355 0.75 -2.6 1,408,309 + -1.1 1,408,449 + -1.1 1,408,449 + -0.2 1,408,449 + +0.5 1,408,449 + +0.5 1,408,450 - -0.4 1,408,450 - -0.6 1,408,450 - -1.1 1,408,559 - QEN71_RS06360 0.35 -1.1 1,408,767 + -0.7 1,408,768 - -0.1 1,408,768 - -0.6 1,408,768 - +1.2 1,408,768 - -0.9 1,409,722 - -0.5
Or see this region's nucleotide sequence