Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS06360

Experiment: LB_noSalt with Chloride 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS06355 and QEN71_RS06360 are separated by 99 nucleotidesQEN71_RS06360 and QEN71_RS06365 overlap by 1 nucleotidesQEN71_RS06365 and QEN71_RS06370 are separated by 97 nucleotides QEN71_RS06355: QEN71_RS06355 - succinyl-diaminopimelate desuccinylase, at 1,407,191 to 1,408,330 _RS06355 QEN71_RS06360: QEN71_RS06360 - ArsC family reductase, at 1,408,430 to 1,408,795 _RS06360 QEN71_RS06365: QEN71_RS06365 - 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase, at 1,408,795 to 1,409,622 _RS06365 QEN71_RS06370: QEN71_RS06370 - succinyldiaminopimelate transaminase, at 1,409,720 to 1,410,937 _RS06370 Position (kb) 1408 1409Strain fitness (log2 ratio) -3 -2 -1 0 1at 1407.474 kb on + strand, within QEN71_RS06355at 1407.474 kb on + strand, within QEN71_RS06355at 1407.634 kb on + strand, within QEN71_RS06355at 1407.634 kb on + strand, within QEN71_RS06355at 1407.635 kb on - strand, within QEN71_RS06355at 1407.635 kb on - strand, within QEN71_RS06355at 1407.635 kb on - strand, within QEN71_RS06355at 1407.645 kb on + strand, within QEN71_RS06355at 1407.645 kb on + strand, within QEN71_RS06355at 1407.645 kb on + strand, within QEN71_RS06355at 1407.645 kb on + strand, within QEN71_RS06355at 1407.645 kb on + strand, within QEN71_RS06355at 1407.646 kb on - strand, within QEN71_RS06355at 1407.646 kb on - strand, within QEN71_RS06355at 1407.646 kb on - strand, within QEN71_RS06355at 1408.041 kb on + strand, within QEN71_RS06355at 1408.041 kb on + strand, within QEN71_RS06355at 1408.041 kb on + strand, within QEN71_RS06355at 1408.042 kb on - strand, within QEN71_RS06355at 1408.042 kb on - strand, within QEN71_RS06355at 1408.309 kb on + strandat 1408.449 kb on + strandat 1408.449 kb on + strandat 1408.449 kb on + strandat 1408.449 kb on + strandat 1408.450 kb on - strandat 1408.450 kb on - strandat 1408.450 kb on - strandat 1408.559 kb on - strand, within QEN71_RS06360at 1408.767 kb on + strandat 1408.768 kb on - strandat 1408.768 kb on - strandat 1408.768 kb on - strandat 1408.768 kb on - strandat 1409.722 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_noSalt with Chloride 200 mM
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1,407,474 + QEN71_RS06355 0.25 -1.1
1,407,474 + QEN71_RS06355 0.25 -1.9
1,407,634 + QEN71_RS06355 0.39 -1.8
1,407,634 + QEN71_RS06355 0.39 -1.5
1,407,635 - QEN71_RS06355 0.39 -0.9
1,407,635 - QEN71_RS06355 0.39 -0.6
1,407,635 - QEN71_RS06355 0.39 -1.1
1,407,645 + QEN71_RS06355 0.40 -0.8
1,407,645 + QEN71_RS06355 0.40 -2.3
1,407,645 + QEN71_RS06355 0.40 -0.6
1,407,645 + QEN71_RS06355 0.40 -0.1
1,407,645 + QEN71_RS06355 0.40 -3.4
1,407,646 - QEN71_RS06355 0.40 -2.4
1,407,646 - QEN71_RS06355 0.40 -2.5
1,407,646 - QEN71_RS06355 0.40 -0.8
1,408,041 + QEN71_RS06355 0.75 -0.5
1,408,041 + QEN71_RS06355 0.75 -2.1
1,408,041 + QEN71_RS06355 0.75 -1.3
1,408,042 - QEN71_RS06355 0.75 -1.5
1,408,042 - QEN71_RS06355 0.75 -2.6
1,408,309 + -1.1
1,408,449 + -1.1
1,408,449 + -0.2
1,408,449 + +0.5
1,408,449 + +0.5
1,408,450 - -0.4
1,408,450 - -0.6
1,408,450 - -1.1
1,408,559 - QEN71_RS06360 0.35 -1.1
1,408,767 + -0.7
1,408,768 - -0.1
1,408,768 - -0.6
1,408,768 - +1.2
1,408,768 - -0.9
1,409,722 - -0.5

Or see this region's nucleotide sequence