Experiment: LB_noSalt with Chloride 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS03935 and QEN71_RS03940 are separated by 163 nucleotides QEN71_RS03940 and QEN71_RS03945 are separated by 158 nucleotides
QEN71_RS03935: QEN71_RS03935 - amidase, at 869,241 to 870,629
_RS03935
QEN71_RS03940: QEN71_RS03940 - cation:proton antiporter, at 870,793 to 872,562
_RS03940
QEN71_RS03945: QEN71_RS03945 - type 1 glutamine amidotransferase, at 872,721 to 874,091
_RS03945
Position (kb) 870
871
872
873 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 869.827 kb on + strand, within QEN71_RS03935 at 869.827 kb on + strand, within QEN71_RS03935 at 869.827 kb on + strand, within QEN71_RS03935 at 869.827 kb on + strand, within QEN71_RS03935 at 869.827 kb on + strand, within QEN71_RS03935 at 869.827 kb on + strand, within QEN71_RS03935 at 869.828 kb on - strand, within QEN71_RS03935 at 869.828 kb on - strand, within QEN71_RS03935 at 869.828 kb on - strand, within QEN71_RS03935 at 869.828 kb on - strand, within QEN71_RS03935 at 869.828 kb on - strand, within QEN71_RS03935 at 869.828 kb on - strand, within QEN71_RS03935 at 870.170 kb on - strand, within QEN71_RS03935 at 870.191 kb on - strand, within QEN71_RS03935 at 870.512 kb on + strand at 870.512 kb on + strand at 870.512 kb on + strand at 870.513 kb on - strand at 870.513 kb on - strand at 870.624 kb on - strand at 870.624 kb on - strand at 870.663 kb on + strand at 870.663 kb on + strand at 870.663 kb on + strand at 870.663 kb on + strand at 870.663 kb on + strand at 870.663 kb on + strand at 870.664 kb on - strand at 870.696 kb on - strand at 870.696 kb on - strand at 870.726 kb on + strand at 870.726 kb on + strand at 870.726 kb on + strand at 870.727 kb on - strand at 870.727 kb on - strand at 870.727 kb on - strand at 870.752 kb on + strand at 870.771 kb on - strand at 870.780 kb on - strand at 870.780 kb on - strand at 870.792 kb on + strand at 870.792 kb on + strand at 870.792 kb on + strand at 870.792 kb on + strand at 870.792 kb on + strand at 870.792 kb on + strand at 870.792 kb on + strand at 870.792 kb on + strand at 870.792 kb on + strand at 870.792 kb on + strand at 870.792 kb on + strand at 870.793 kb on - strand at 870.793 kb on - strand at 870.793 kb on - strand at 870.793 kb on - strand at 870.793 kb on - strand at 870.793 kb on - strand at 870.793 kb on - strand at 870.793 kb on - strand at 870.813 kb on + strand at 870.814 kb on - strand at 870.814 kb on - strand at 870.814 kb on - strand at 870.898 kb on + strand at 870.898 kb on + strand at 870.899 kb on - strand at 870.899 kb on - strand at 870.899 kb on - strand at 870.899 kb on - strand at 870.899 kb on - strand at 870.899 kb on - strand at 870.899 kb on - strand at 870.899 kb on - strand at 870.900 kb on + strand at 871.108 kb on + strand, within QEN71_RS03940 at 871.338 kb on + strand, within QEN71_RS03940 at 871.426 kb on + strand, within QEN71_RS03940 at 871.426 kb on + strand, within QEN71_RS03940 at 871.426 kb on + strand, within QEN71_RS03940 at 871.426 kb on + strand, within QEN71_RS03940 at 871.426 kb on + strand, within QEN71_RS03940 at 871.426 kb on + strand, within QEN71_RS03940 at 871.426 kb on + strand, within QEN71_RS03940 at 871.427 kb on - strand, within QEN71_RS03940 at 871.427 kb on - strand, within QEN71_RS03940 at 871.427 kb on - strand, within QEN71_RS03940 at 871.516 kb on + strand, within QEN71_RS03940 at 871.516 kb on + strand, within QEN71_RS03940 at 871.516 kb on + strand, within QEN71_RS03940 at 871.517 kb on - strand, within QEN71_RS03940 at 871.517 kb on - strand, within QEN71_RS03940 at 871.675 kb on + strand, within QEN71_RS03940 at 871.918 kb on + strand, within QEN71_RS03940 at 871.919 kb on - strand, within QEN71_RS03940 at 871.999 kb on + strand, within QEN71_RS03940 at 871.999 kb on + strand, within QEN71_RS03940 at 871.999 kb on + strand, within QEN71_RS03940 at 871.999 kb on + strand, within QEN71_RS03940 at 872.000 kb on - strand, within QEN71_RS03940 at 872.000 kb on - strand, within QEN71_RS03940 at 872.000 kb on - strand, within QEN71_RS03940 at 872.000 kb on - strand, within QEN71_RS03940 at 872.000 kb on - strand, within QEN71_RS03940 at 872.000 kb on - strand, within QEN71_RS03940 at 872.128 kb on + strand, within QEN71_RS03940 at 872.140 kb on + strand, within QEN71_RS03940 at 872.140 kb on + strand, within QEN71_RS03940 at 872.140 kb on + strand, within QEN71_RS03940 at 872.140 kb on + strand, within QEN71_RS03940 at 872.140 kb on + strand, within QEN71_RS03940 at 872.140 kb on + strand, within QEN71_RS03940 at 872.140 kb on + strand, within QEN71_RS03940 at 872.140 kb on + strand, within QEN71_RS03940 at 872.141 kb on - strand, within QEN71_RS03940 at 872.141 kb on - strand, within QEN71_RS03940 at 872.141 kb on - strand, within QEN71_RS03940 at 872.141 kb on - strand, within QEN71_RS03940 at 872.141 kb on - strand, within QEN71_RS03940 at 872.141 kb on - strand, within QEN71_RS03940 at 872.141 kb on - strand, within QEN71_RS03940 at 872.150 kb on + strand, within QEN71_RS03940 at 872.150 kb on + strand, within QEN71_RS03940 at 872.150 kb on + strand, within QEN71_RS03940 at 872.150 kb on + strand, within QEN71_RS03940 at 872.150 kb on + strand, within QEN71_RS03940 at 872.150 kb on + strand, within QEN71_RS03940 at 872.150 kb on + strand, within QEN71_RS03940 at 872.150 kb on + strand, within QEN71_RS03940 at 872.150 kb on + strand, within QEN71_RS03940 at 872.150 kb on + strand, within QEN71_RS03940 at 872.150 kb on + strand, within QEN71_RS03940 at 872.150 kb on + strand, within QEN71_RS03940 at 872.150 kb on + strand, within QEN71_RS03940 at 872.150 kb on + strand, within QEN71_RS03940 at 872.151 kb on - strand, within QEN71_RS03940 at 872.151 kb on - strand, within QEN71_RS03940 at 872.151 kb on - strand, within QEN71_RS03940 at 872.151 kb on - strand, within QEN71_RS03940 at 872.151 kb on - strand, within QEN71_RS03940 at 872.151 kb on - strand, within QEN71_RS03940 at 872.151 kb on - strand, within QEN71_RS03940 at 872.151 kb on - strand, within QEN71_RS03940 at 872.151 kb on - strand, within QEN71_RS03940 at 872.151 kb on - strand, within QEN71_RS03940 at 872.151 kb on - strand, within QEN71_RS03940 at 872.152 kb on + strand, within QEN71_RS03940 at 872.152 kb on + strand, within QEN71_RS03940 at 872.231 kb on + strand, within QEN71_RS03940 at 872.231 kb on + strand, within QEN71_RS03940 at 872.231 kb on + strand, within QEN71_RS03940 at 872.232 kb on - strand, within QEN71_RS03940 at 872.232 kb on - strand, within QEN71_RS03940 at 872.677 kb on + strand at 872.677 kb on + strand at 872.677 kb on + strand at 872.677 kb on + strand at 872.677 kb on + strand at 872.677 kb on + strand at 872.677 kb on + strand at 872.677 kb on + strand at 872.677 kb on + strand at 872.677 kb on + strand at 872.677 kb on + strand at 872.677 kb on + strand at 872.677 kb on + strand at 872.678 kb on - strand at 872.678 kb on - strand at 872.678 kb on - strand at 872.678 kb on - strand at 872.678 kb on - strand at 872.678 kb on - strand at 872.678 kb on - strand at 872.678 kb on - strand at 872.678 kb on - strand at 872.678 kb on - strand at 872.678 kb on - strand at 872.678 kb on - strand at 872.678 kb on - strand at 872.678 kb on - strand at 872.678 kb on - strand at 872.678 kb on - strand at 872.683 kb on + strand at 872.683 kb on + strand at 872.684 kb on - strand at 872.714 kb on + strand at 872.714 kb on + strand at 872.714 kb on + strand at 872.714 kb on + strand at 872.714 kb on + strand at 872.715 kb on - strand at 872.715 kb on - strand at 872.715 kb on - strand at 872.715 kb on - strand at 872.715 kb on - strand at 872.715 kb on - strand at 872.827 kb on + strand at 872.827 kb on + strand at 872.992 kb on + strand, within QEN71_RS03945 at 872.993 kb on - strand, within QEN71_RS03945 at 873.219 kb on + strand, within QEN71_RS03945 at 873.220 kb on - strand, within QEN71_RS03945 at 873.220 kb on - strand, within QEN71_RS03945 at 873.286 kb on + strand, within QEN71_RS03945 at 873.287 kb on - strand, within QEN71_RS03945 at 873.399 kb on + strand, within QEN71_RS03945 at 873.399 kb on + strand, within QEN71_RS03945 at 873.399 kb on + strand, within QEN71_RS03945 at 873.399 kb on + strand, within QEN71_RS03945 at 873.400 kb on - strand, within QEN71_RS03945 at 873.400 kb on - strand, within QEN71_RS03945 at 873.400 kb on - strand, within QEN71_RS03945 at 873.400 kb on - strand, within QEN71_RS03945 at 873.513 kb on + strand, within QEN71_RS03945
Per-strain Table
Position Strand Gene LocusTag Fraction LB_noSalt with Chloride 200 mM remove 869,827 + QEN71_RS03935 0.42 -0.3 869,827 + QEN71_RS03935 0.42 -0.8 869,827 + QEN71_RS03935 0.42 -0.3 869,827 + QEN71_RS03935 0.42 -0.7 869,827 + QEN71_RS03935 0.42 -1.0 869,827 + QEN71_RS03935 0.42 +0.3 869,828 - QEN71_RS03935 0.42 -0.2 869,828 - QEN71_RS03935 0.42 -0.1 869,828 - QEN71_RS03935 0.42 -0.3 869,828 - QEN71_RS03935 0.42 -0.3 869,828 - QEN71_RS03935 0.42 -2.5 869,828 - QEN71_RS03935 0.42 -0.2 870,170 - QEN71_RS03935 0.67 +1.7 870,191 - QEN71_RS03935 0.68 -0.9 870,512 + -0.3 870,512 + +0.6 870,512 + -1.1 870,513 - -0.4 870,513 - -0.3 870,624 - -0.0 870,624 - -0.5 870,663 + -0.2 870,663 + -0.1 870,663 + -1.3 870,663 + -0.2 870,663 + +0.5 870,663 + +0.6 870,664 - +0.8 870,696 - -0.1 870,696 - -0.7 870,726 + +0.4 870,726 + +0.0 870,726 + -0.2 870,727 - +1.6 870,727 - +0.0 870,727 - -0.4 870,752 + -0.8 870,771 - -2.3 870,780 - -0.0 870,780 - -0.6 870,792 + +1.1 870,792 + -0.6 870,792 + +0.5 870,792 + -0.9 870,792 + +1.2 870,792 + +0.1 870,792 + +0.3 870,792 + +2.6 870,792 + -0.3 870,792 + -0.0 870,792 + -0.6 870,793 - -0.8 870,793 - -0.9 870,793 - -1.2 870,793 - -1.6 870,793 - -0.6 870,793 - -2.5 870,793 - -1.4 870,793 - -1.8 870,813 + -2.5 870,814 - -0.6 870,814 - -0.9 870,814 - -1.2 870,898 + -1.2 870,898 + -3.5 870,899 - -0.2 870,899 - -1.8 870,899 - -3.1 870,899 - -3.2 870,899 - +0.6 870,899 - -2.2 870,899 - -1.0 870,899 - +0.6 870,900 + -1.3 871,108 + QEN71_RS03940 0.18 +1.6 871,338 + QEN71_RS03940 0.31 -2.7 871,426 + QEN71_RS03940 0.36 +1.0 871,426 + QEN71_RS03940 0.36 -2.0 871,426 + QEN71_RS03940 0.36 -1.5 871,426 + QEN71_RS03940 0.36 +0.2 871,426 + QEN71_RS03940 0.36 -1.6 871,426 + QEN71_RS03940 0.36 -1.3 871,426 + QEN71_RS03940 0.36 -0.4 871,427 - QEN71_RS03940 0.36 -0.7 871,427 - QEN71_RS03940 0.36 -0.0 871,427 - QEN71_RS03940 0.36 -0.8 871,516 + QEN71_RS03940 0.41 -0.3 871,516 + QEN71_RS03940 0.41 -0.6 871,516 + QEN71_RS03940 0.41 -2.8 871,517 - QEN71_RS03940 0.41 -2.0 871,517 - QEN71_RS03940 0.41 -2.4 871,675 + QEN71_RS03940 0.50 -1.3 871,918 + QEN71_RS03940 0.64 -2.5 871,919 - QEN71_RS03940 0.64 -2.5 871,999 + QEN71_RS03940 0.68 -2.2 871,999 + QEN71_RS03940 0.68 -0.7 871,999 + QEN71_RS03940 0.68 -0.3 871,999 + QEN71_RS03940 0.68 -0.6 872,000 - QEN71_RS03940 0.68 -1.0 872,000 - QEN71_RS03940 0.68 +0.3 872,000 - QEN71_RS03940 0.68 -2.1 872,000 - QEN71_RS03940 0.68 -0.3 872,000 - QEN71_RS03940 0.68 -2.8 872,000 - QEN71_RS03940 0.68 -0.0 872,128 + QEN71_RS03940 0.75 +1.0 872,140 + QEN71_RS03940 0.76 -3.6 872,140 + QEN71_RS03940 0.76 -0.6 872,140 + QEN71_RS03940 0.76 -1.7 872,140 + QEN71_RS03940 0.76 -1.4 872,140 + QEN71_RS03940 0.76 +0.5 872,140 + QEN71_RS03940 0.76 -2.0 872,140 + QEN71_RS03940 0.76 -0.3 872,140 + QEN71_RS03940 0.76 -1.9 872,141 - QEN71_RS03940 0.76 -2.3 872,141 - QEN71_RS03940 0.76 -0.5 872,141 - QEN71_RS03940 0.76 -0.5 872,141 - QEN71_RS03940 0.76 -1.8 872,141 - QEN71_RS03940 0.76 -0.6 872,141 - QEN71_RS03940 0.76 +2.8 872,141 - QEN71_RS03940 0.76 -0.0 872,150 + QEN71_RS03940 0.77 -1.0 872,150 + QEN71_RS03940 0.77 +0.2 872,150 + QEN71_RS03940 0.77 -1.6 872,150 + QEN71_RS03940 0.77 +0.2 872,150 + QEN71_RS03940 0.77 -2.2 872,150 + QEN71_RS03940 0.77 -0.0 872,150 + QEN71_RS03940 0.77 -2.3 872,150 + QEN71_RS03940 0.77 -2.1 872,150 + QEN71_RS03940 0.77 -1.0 872,150 + QEN71_RS03940 0.77 -1.8 872,150 + QEN71_RS03940 0.77 -1.2 872,150 + QEN71_RS03940 0.77 -1.6 872,150 + QEN71_RS03940 0.77 -0.4 872,150 + QEN71_RS03940 0.77 -1.3 872,151 - QEN71_RS03940 0.77 -0.0 872,151 - QEN71_RS03940 0.77 -1.4 872,151 - QEN71_RS03940 0.77 -0.1 872,151 - QEN71_RS03940 0.77 +0.6 872,151 - QEN71_RS03940 0.77 -2.4 872,151 - QEN71_RS03940 0.77 -0.3 872,151 - QEN71_RS03940 0.77 -0.6 872,151 - QEN71_RS03940 0.77 -0.6 872,151 - QEN71_RS03940 0.77 -1.5 872,151 - QEN71_RS03940 0.77 -1.2 872,151 - QEN71_RS03940 0.77 -0.8 872,152 + QEN71_RS03940 0.77 -2.9 872,152 + QEN71_RS03940 0.77 -0.0 872,231 + QEN71_RS03940 0.81 -1.5 872,231 + QEN71_RS03940 0.81 -1.7 872,231 + QEN71_RS03940 0.81 -0.6 872,232 - QEN71_RS03940 0.81 -1.5 872,232 - QEN71_RS03940 0.81 -1.7 872,677 + +1.2 872,677 + +0.2 872,677 + +0.1 872,677 + +0.2 872,677 + -0.3 872,677 + +0.4 872,677 + +0.3 872,677 + +1.1 872,677 + +0.2 872,677 + -1.2 872,677 + -0.7 872,677 + -1.5 872,677 + -1.0 872,678 - +0.4 872,678 - -0.3 872,678 - -0.4 872,678 - +0.1 872,678 - +0.1 872,678 - +0.4 872,678 - +0.2 872,678 - -0.6 872,678 - -0.9 872,678 - +1.0 872,678 - +0.3 872,678 - +0.2 872,678 - -0.9 872,678 - +0.6 872,678 - -1.0 872,678 - -1.0 872,683 + -0.1 872,683 + +1.2 872,684 - +0.4 872,714 + -0.3 872,714 + +0.2 872,714 + +0.4 872,714 + -1.4 872,714 + -1.4 872,715 - -0.1 872,715 - +0.4 872,715 - -1.3 872,715 - -0.3 872,715 - -0.2 872,715 - -1.4 872,827 + -0.3 872,827 + -1.9 872,992 + QEN71_RS03945 0.20 -0.2 872,993 - QEN71_RS03945 0.20 +0.2 873,219 + QEN71_RS03945 0.36 +0.2 873,220 - QEN71_RS03945 0.36 -0.0 873,220 - QEN71_RS03945 0.36 -1.2 873,286 + QEN71_RS03945 0.41 -0.8 873,287 - QEN71_RS03945 0.41 +0.7 873,399 + QEN71_RS03945 0.49 -0.3 873,399 + QEN71_RS03945 0.49 -0.1 873,399 + QEN71_RS03945 0.49 -0.3 873,399 + QEN71_RS03945 0.49 +0.7 873,400 - QEN71_RS03945 0.50 -1.0 873,400 - QEN71_RS03945 0.50 -0.3 873,400 - QEN71_RS03945 0.50 +0.1 873,400 - QEN71_RS03945 0.50 -1.2 873,513 + QEN71_RS03945 0.58 -1.6
Or see this region's nucleotide sequence