Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS03810

Experiment: LB_noSalt with Chloride 200 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntQEN71_RS03800 and QEN71_RS03805 overlap by 17 nucleotidesQEN71_RS03805 and QEN71_RS03810 overlap by 20 nucleotidesQEN71_RS03810 and QEN71_RS03815 are separated by 2 nucleotidesQEN71_RS03815 and QEN71_RS03820 overlap by 1 nucleotidesQEN71_RS03820 and QEN71_RS03825 overlap by 4 nucleotides QEN71_RS03800: QEN71_RS03800 - beta-ketoacyl synthase chain length factor, at 840,366 to 841,106 _RS03800 QEN71_RS03805: QEN71_RS03805 - lysophospholipid acyltransferase family protein, at 841,090 to 841,884 _RS03805 QEN71_RS03810: QEN71_RS03810 - phosphopantetheine-binding protein, at 841,865 to 842,164 _RS03810 QEN71_RS03815: QEN71_RS03815 - acyl carrier protein, at 842,167 to 842,418 _RS03815 QEN71_RS03820: QEN71_RS03820 - hypothetical protein, at 842,418 to 843,116 _RS03820 QEN71_RS03825: QEN71_RS03825 - AMP-binding protein, at 843,113 to 844,801 _RS03825 Position (kb) 841 842 843Strain fitness (log2 ratio) -2 -1 0 1 2at 840.939 kb on + strand, within QEN71_RS03800at 840.941 kb on + strand, within QEN71_RS03800at 840.941 kb on + strand, within QEN71_RS03800at 840.941 kb on + strand, within QEN71_RS03800at 840.941 kb on + strand, within QEN71_RS03800at 840.941 kb on + strand, within QEN71_RS03800at 840.941 kb on + strand, within QEN71_RS03800at 840.942 kb on - strand, within QEN71_RS03800at 840.942 kb on - strand, within QEN71_RS03800at 840.953 kb on + strand, within QEN71_RS03800at 840.953 kb on + strand, within QEN71_RS03800at 840.953 kb on + strand, within QEN71_RS03800at 840.953 kb on + strand, within QEN71_RS03800at 840.954 kb on - strand, within QEN71_RS03800at 840.954 kb on - strand, within QEN71_RS03800at 841.040 kb on + strandat 841.040 kb on + strandat 841.040 kb on + strandat 841.040 kb on + strandat 841.040 kb on + strandat 841.041 kb on - strandat 841.041 kb on - strandat 841.041 kb on - strandat 841.041 kb on - strandat 841.041 kb on - strandat 841.041 kb on - strandat 841.066 kb on - strandat 841.108 kb on + strandat 841.108 kb on + strandat 841.108 kb on + strandat 841.108 kb on + strandat 841.486 kb on + strand, within QEN71_RS03805at 841.486 kb on + strand, within QEN71_RS03805at 841.486 kb on + strand, within QEN71_RS03805at 841.487 kb on - strand, within QEN71_RS03805at 841.487 kb on - strand, within QEN71_RS03805at 841.517 kb on + strand, within QEN71_RS03805at 841.517 kb on + strand, within QEN71_RS03805at 841.518 kb on - strand, within QEN71_RS03805at 841.518 kb on - strand, within QEN71_RS03805at 841.518 kb on - strand, within QEN71_RS03805at 841.549 kb on + strand, within QEN71_RS03805at 841.549 kb on + strand, within QEN71_RS03805at 841.549 kb on + strand, within QEN71_RS03805at 841.550 kb on - strand, within QEN71_RS03805at 841.550 kb on - strand, within QEN71_RS03805at 841.711 kb on + strand, within QEN71_RS03805at 841.711 kb on + strand, within QEN71_RS03805at 841.711 kb on + strand, within QEN71_RS03805at 841.711 kb on + strand, within QEN71_RS03805at 841.711 kb on + strand, within QEN71_RS03805at 841.711 kb on + strand, within QEN71_RS03805at 841.711 kb on + strand, within QEN71_RS03805at 841.711 kb on + strand, within QEN71_RS03805at 841.711 kb on + strand, within QEN71_RS03805at 841.711 kb on + strand, within QEN71_RS03805at 841.711 kb on + strand, within QEN71_RS03805at 841.712 kb on - strand, within QEN71_RS03805at 841.712 kb on - strand, within QEN71_RS03805at 841.712 kb on - strand, within QEN71_RS03805at 841.712 kb on - strand, within QEN71_RS03805at 841.712 kb on - strand, within QEN71_RS03805at 841.842 kb on + strandat 841.842 kb on + strandat 841.842 kb on + strandat 841.842 kb on + strandat 841.842 kb on + strandat 841.842 kb on + strandat 841.842 kb on + strandat 841.842 kb on + strandat 841.842 kb on + strandat 841.842 kb on + strandat 841.842 kb on + strandat 841.842 kb on + strandat 841.843 kb on - strandat 841.843 kb on - strandat 841.843 kb on - strandat 841.843 kb on - strandat 841.843 kb on - strandat 841.843 kb on - strandat 841.843 kb on - strandat 841.843 kb on - strandat 841.843 kb on - strandat 841.864 kb on + strandat 841.864 kb on + strandat 841.864 kb on + strandat 841.865 kb on - strandat 841.865 kb on - strandat 842.030 kb on + strand, within QEN71_RS03810at 842.030 kb on + strand, within QEN71_RS03810at 842.031 kb on - strand, within QEN71_RS03810at 842.031 kb on - strand, within QEN71_RS03810at 842.031 kb on - strand, within QEN71_RS03810at 842.031 kb on - strand, within QEN71_RS03810at 842.031 kb on - strand, within QEN71_RS03810at 842.031 kb on - strand, within QEN71_RS03810at 842.089 kb on + strand, within QEN71_RS03810at 842.089 kb on + strand, within QEN71_RS03810at 842.089 kb on + strand, within QEN71_RS03810at 842.089 kb on + strand, within QEN71_RS03810at 842.090 kb on - strand, within QEN71_RS03810at 842.143 kb on + strandat 842.551 kb on + strand, within QEN71_RS03820at 842.551 kb on + strand, within QEN71_RS03820at 842.551 kb on + strand, within QEN71_RS03820at 842.552 kb on - strand, within QEN71_RS03820at 842.569 kb on - strand, within QEN71_RS03820at 842.687 kb on - strand, within QEN71_RS03820at 842.734 kb on + strand, within QEN71_RS03820at 842.734 kb on + strand, within QEN71_RS03820at 842.735 kb on - strand, within QEN71_RS03820at 842.735 kb on - strand, within QEN71_RS03820at 842.735 kb on - strand, within QEN71_RS03820at 842.784 kb on + strand, within QEN71_RS03820at 842.784 kb on + strand, within QEN71_RS03820at 842.784 kb on + strand, within QEN71_RS03820at 842.784 kb on + strand, within QEN71_RS03820at 842.784 kb on + strand, within QEN71_RS03820at 842.784 kb on + strand, within QEN71_RS03820at 842.785 kb on - strand, within QEN71_RS03820at 842.785 kb on - strand, within QEN71_RS03820at 842.785 kb on - strand, within QEN71_RS03820at 842.785 kb on - strand, within QEN71_RS03820at 842.785 kb on - strand, within QEN71_RS03820at 842.970 kb on + strand, within QEN71_RS03820at 842.982 kb on + strand, within QEN71_RS03820at 842.982 kb on + strand, within QEN71_RS03820at 842.983 kb on - strand, within QEN71_RS03820at 842.983 kb on - strand, within QEN71_RS03820at 842.983 kb on - strand, within QEN71_RS03820at 843.009 kb on + strand, within QEN71_RS03820at 843.009 kb on + strand, within QEN71_RS03820at 843.009 kb on + strand, within QEN71_RS03820at 843.010 kb on - strand, within QEN71_RS03820at 843.010 kb on - strand, within QEN71_RS03820at 843.010 kb on - strand, within QEN71_RS03820at 843.010 kb on - strand, within QEN71_RS03820at 843.027 kb on + strand, within QEN71_RS03820at 843.027 kb on + strand, within QEN71_RS03820at 843.027 kb on + strand, within QEN71_RS03820at 843.027 kb on + strand, within QEN71_RS03820at 843.028 kb on - strand, within QEN71_RS03820at 843.028 kb on - strand, within QEN71_RS03820at 843.064 kb on + strandat 843.065 kb on - strandat 843.065 kb on - strandat 843.065 kb on - strandat 843.065 kb on - strandat 843.072 kb on + strandat 843.072 kb on + strandat 843.073 kb on - strandat 843.073 kb on - strandat 843.073 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB_noSalt with Chloride 200 mM
remove
840,939 + QEN71_RS03800 0.77 -0.9
840,941 + QEN71_RS03800 0.78 -0.5
840,941 + QEN71_RS03800 0.78 +0.0
840,941 + QEN71_RS03800 0.78 +0.3
840,941 + QEN71_RS03800 0.78 +0.6
840,941 + QEN71_RS03800 0.78 -1.0
840,941 + QEN71_RS03800 0.78 +1.0
840,942 - QEN71_RS03800 0.78 -0.1
840,942 - QEN71_RS03800 0.78 +0.5
840,953 + QEN71_RS03800 0.79 +0.4
840,953 + QEN71_RS03800 0.79 -0.5
840,953 + QEN71_RS03800 0.79 +1.0
840,953 + QEN71_RS03800 0.79 -1.8
840,954 - QEN71_RS03800 0.79 +0.6
840,954 - QEN71_RS03800 0.79 +1.0
841,040 + -0.7
841,040 + +0.1
841,040 + -1.9
841,040 + -0.7
841,040 + -0.4
841,041 - +0.2
841,041 - +0.3
841,041 - +0.1
841,041 - -0.0
841,041 - +1.2
841,041 - +0.1
841,066 - -0.6
841,108 + -1.2
841,108 + -0.8
841,108 + -0.4
841,108 + -0.7
841,486 + QEN71_RS03805 0.50 +1.0
841,486 + QEN71_RS03805 0.50 +0.4
841,486 + QEN71_RS03805 0.50 +0.4
841,487 - QEN71_RS03805 0.50 -0.8
841,487 - QEN71_RS03805 0.50 +0.5
841,517 + QEN71_RS03805 0.54 -1.1
841,517 + QEN71_RS03805 0.54 -0.1
841,518 - QEN71_RS03805 0.54 +1.0
841,518 - QEN71_RS03805 0.54 -0.9
841,518 - QEN71_RS03805 0.54 +0.3
841,549 + QEN71_RS03805 0.58 -0.5
841,549 + QEN71_RS03805 0.58 -0.1
841,549 + QEN71_RS03805 0.58 -0.4
841,550 - QEN71_RS03805 0.58 +0.5
841,550 - QEN71_RS03805 0.58 +0.9
841,711 + QEN71_RS03805 0.78 -0.0
841,711 + QEN71_RS03805 0.78 +1.1
841,711 + QEN71_RS03805 0.78 -0.3
841,711 + QEN71_RS03805 0.78 +0.3
841,711 + QEN71_RS03805 0.78 -0.1
841,711 + QEN71_RS03805 0.78 -0.2
841,711 + QEN71_RS03805 0.78 -1.1
841,711 + QEN71_RS03805 0.78 +0.1
841,711 + QEN71_RS03805 0.78 -0.0
841,711 + QEN71_RS03805 0.78 -0.9
841,711 + QEN71_RS03805 0.78 +1.4
841,712 - QEN71_RS03805 0.78 +0.5
841,712 - QEN71_RS03805 0.78 +0.2
841,712 - QEN71_RS03805 0.78 -0.2
841,712 - QEN71_RS03805 0.78 +0.7
841,712 - QEN71_RS03805 0.78 -1.6
841,842 + -1.7
841,842 + +0.2
841,842 + -0.8
841,842 + -0.0
841,842 + -1.8
841,842 + -0.1
841,842 + -0.4
841,842 + -0.1
841,842 + +0.4
841,842 + +0.2
841,842 + +0.2
841,842 + -0.0
841,843 - +0.1
841,843 - +1.4
841,843 - +0.5
841,843 - -0.2
841,843 - -0.5
841,843 - -0.5
841,843 - -0.7
841,843 - +1.4
841,843 - +0.6
841,864 + -0.5
841,864 + -0.3
841,864 + -0.0
841,865 - -1.1
841,865 - -0.0
842,030 + QEN71_RS03810 0.55 -0.6
842,030 + QEN71_RS03810 0.55 -0.4
842,031 - QEN71_RS03810 0.55 +0.1
842,031 - QEN71_RS03810 0.55 -0.5
842,031 - QEN71_RS03810 0.55 -0.9
842,031 - QEN71_RS03810 0.55 +0.5
842,031 - QEN71_RS03810 0.55 -0.8
842,031 - QEN71_RS03810 0.55 -0.1
842,089 + QEN71_RS03810 0.75 +1.0
842,089 + QEN71_RS03810 0.75 +0.3
842,089 + QEN71_RS03810 0.75 +0.7
842,089 + QEN71_RS03810 0.75 -1.4
842,090 - QEN71_RS03810 0.75 +1.6
842,143 + -0.3
842,551 + QEN71_RS03820 0.19 -0.7
842,551 + QEN71_RS03820 0.19 +0.2
842,551 + QEN71_RS03820 0.19 -0.6
842,552 - QEN71_RS03820 0.19 -0.1
842,569 - QEN71_RS03820 0.22 +0.2
842,687 - QEN71_RS03820 0.38 -0.5
842,734 + QEN71_RS03820 0.45 +1.6
842,734 + QEN71_RS03820 0.45 +1.2
842,735 - QEN71_RS03820 0.45 +2.0
842,735 - QEN71_RS03820 0.45 +0.0
842,735 - QEN71_RS03820 0.45 -0.3
842,784 + QEN71_RS03820 0.52 +0.5
842,784 + QEN71_RS03820 0.52 -0.2
842,784 + QEN71_RS03820 0.52 -0.2
842,784 + QEN71_RS03820 0.52 -1.1
842,784 + QEN71_RS03820 0.52 -0.0
842,784 + QEN71_RS03820 0.52 +0.1
842,785 - QEN71_RS03820 0.53 -0.9
842,785 - QEN71_RS03820 0.53 +0.5
842,785 - QEN71_RS03820 0.53 +1.3
842,785 - QEN71_RS03820 0.53 -0.6
842,785 - QEN71_RS03820 0.53 -0.9
842,970 + QEN71_RS03820 0.79 -0.1
842,982 + QEN71_RS03820 0.81 +1.8
842,982 + QEN71_RS03820 0.81 +0.6
842,983 - QEN71_RS03820 0.81 +0.4
842,983 - QEN71_RS03820 0.81 +0.1
842,983 - QEN71_RS03820 0.81 +0.5
843,009 + QEN71_RS03820 0.85 +0.6
843,009 + QEN71_RS03820 0.85 -0.5
843,009 + QEN71_RS03820 0.85 +0.3
843,010 - QEN71_RS03820 0.85 -0.1
843,010 - QEN71_RS03820 0.85 +0.5
843,010 - QEN71_RS03820 0.85 -1.7
843,010 - QEN71_RS03820 0.85 +1.0
843,027 + QEN71_RS03820 0.87 -2.0
843,027 + QEN71_RS03820 0.87 +1.0
843,027 + QEN71_RS03820 0.87 +0.1
843,027 + QEN71_RS03820 0.87 +0.7
843,028 - QEN71_RS03820 0.87 +0.1
843,028 - QEN71_RS03820 0.87 -0.6
843,064 + -0.5
843,065 - -0.8
843,065 - +0.2
843,065 - +0.3
843,065 - -0.8
843,072 + -1.2
843,072 + -0.0
843,073 - -1.0
843,073 - +0.1
843,073 - -0.6

Or see this region's nucleotide sequence