Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS03455

Experiment: LB_noSalt with Chloride 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS03450 and QEN71_RS03455 are separated by 63 nucleotidesQEN71_RS03455 and QEN71_RS03460 are separated by 1 nucleotides QEN71_RS03450: QEN71_RS03450 - efflux RND transporter periplasmic adaptor subunit, at 767,818 to 769,071 _RS03450 QEN71_RS03455: QEN71_RS03455 - multidrug efflux RND transporter permease subunit, at 769,135 to 772,395 _RS03455 QEN71_RS03460: QEN71_RS03460 - efflux transporter outer membrane subunit, at 772,397 to 773,869 _RS03460 Position (kb) 769 770 771 772 773Strain fitness (log2 ratio) -2 -1 0 1 2at 768.222 kb on - strand, within QEN71_RS03450at 769.369 kb on + strandat 769.369 kb on + strandat 769.369 kb on + strandat 769.369 kb on + strandat 769.369 kb on + strandat 769.369 kb on + strandat 769.369 kb on + strandat 769.369 kb on + strandat 769.370 kb on - strandat 769.370 kb on - strandat 769.370 kb on - strandat 769.370 kb on - strandat 769.370 kb on - strandat 769.370 kb on - strandat 771.916 kb on + strand, within QEN71_RS03455at 772.483 kb on - strandat 772.483 kb on - strandat 772.488 kb on + strandat 772.488 kb on + strandat 772.500 kb on - strandat 772.500 kb on - strandat 772.517 kb on + strandat 772.517 kb on + strandat 772.517 kb on + strandat 772.517 kb on + strandat 772.517 kb on + strandat 772.517 kb on + strandat 772.517 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_noSalt with Chloride 200 mM
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768,222 - QEN71_RS03450 0.32 +1.7
769,369 + -0.4
769,369 + -0.5
769,369 + -1.2
769,369 + -1.2
769,369 + +1.7
769,369 + -0.8
769,369 + +0.3
769,369 + +0.4
769,370 - -0.0
769,370 - +0.1
769,370 - -2.4
769,370 - +0.7
769,370 - -0.3
769,370 - -1.6
771,916 + QEN71_RS03455 0.85 -1.5
772,483 - +0.6
772,483 - -1.2
772,488 + -0.3
772,488 + +0.9
772,500 - -1.0
772,500 - -0.4
772,517 + +0.1
772,517 + +0.4
772,517 + +1.8
772,517 + -2.3
772,517 + -0.3
772,517 + -0.7
772,517 + +1.7

Or see this region's nucleotide sequence