Experiment: LB_noSalt with Chloride 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS02600 and QEN71_RS02605 overlap by 4 nucleotides QEN71_RS02605 and QEN71_RS02610 are separated by 63 nucleotides QEN71_RS02610 and QEN71_RS02615 are separated by 252 nucleotides
QEN71_RS02600: QEN71_RS02600 - carbohydrate ABC transporter permease, at 582,524 to 583,390
_RS02600
QEN71_RS02605: QEN71_RS02605 - HAD family phosphatase, at 583,387 to 584,079
_RS02605
QEN71_RS02610: QEN71_RS02610 - sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC, at 584,143 to 585,252
_RS02610
QEN71_RS02615: QEN71_RS02615 - tetratricopeptide repeat protein, at 585,505 to 587,286
_RS02615
Position (kb) 584
585
586 Strain fitness (log2 ratio) -2
-1
0
1
2 at 583.256 kb on + strand, within QEN71_RS02600 at 583.257 kb on - strand, within QEN71_RS02600 at 583.257 kb on - strand, within QEN71_RS02600 at 583.257 kb on - strand, within QEN71_RS02600 at 583.369 kb on + strand at 583.370 kb on - strand at 583.697 kb on + strand, within QEN71_RS02605 at 583.732 kb on + strand, within QEN71_RS02605 at 583.732 kb on + strand, within QEN71_RS02605 at 583.733 kb on - strand, within QEN71_RS02605 at 583.733 kb on - strand, within QEN71_RS02605 at 583.755 kb on + strand, within QEN71_RS02605 at 583.755 kb on + strand, within QEN71_RS02605 at 583.755 kb on + strand, within QEN71_RS02605 at 583.756 kb on - strand, within QEN71_RS02605 at 583.834 kb on + strand, within QEN71_RS02605 at 583.834 kb on + strand, within QEN71_RS02605 at 583.834 kb on + strand, within QEN71_RS02605 at 583.835 kb on - strand, within QEN71_RS02605 at 583.835 kb on - strand, within QEN71_RS02605 at 583.835 kb on - strand, within QEN71_RS02605 at 583.939 kb on + strand, within QEN71_RS02605 at 583.939 kb on + strand, within QEN71_RS02605 at 583.940 kb on - strand, within QEN71_RS02605 at 583.940 kb on - strand, within QEN71_RS02605 at 583.940 kb on - strand, within QEN71_RS02605 at 583.940 kb on - strand, within QEN71_RS02605 at 583.940 kb on - strand, within QEN71_RS02605 at 583.940 kb on - strand, within QEN71_RS02605 at 583.940 kb on - strand, within QEN71_RS02605 at 583.948 kb on - strand, within QEN71_RS02605 at 584.012 kb on + strand at 584.012 kb on + strand at 584.012 kb on + strand at 584.012 kb on + strand at 584.012 kb on + strand at 584.012 kb on + strand at 584.012 kb on + strand at 584.013 kb on - strand at 584.013 kb on - strand at 584.013 kb on - strand at 584.013 kb on - strand at 584.013 kb on - strand at 584.013 kb on - strand at 584.013 kb on - strand at 584.013 kb on - strand at 584.013 kb on - strand at 584.013 kb on - strand at 584.077 kb on + strand at 584.077 kb on + strand at 584.077 kb on + strand at 584.077 kb on + strand at 584.077 kb on + strand at 584.078 kb on - strand at 584.078 kb on - strand at 584.118 kb on + strand at 584.118 kb on + strand at 584.118 kb on + strand at 584.118 kb on + strand at 584.119 kb on - strand at 584.119 kb on - strand at 584.119 kb on - strand at 584.119 kb on - strand at 584.119 kb on - strand at 584.119 kb on - strand at 584.119 kb on - strand at 584.129 kb on + strand at 584.129 kb on + strand at 584.130 kb on - strand at 584.130 kb on - strand at 584.153 kb on + strand at 584.401 kb on + strand, within QEN71_RS02610 at 584.420 kb on - strand, within QEN71_RS02610 at 584.420 kb on - strand, within QEN71_RS02610 at 584.420 kb on - strand, within QEN71_RS02610 at 584.420 kb on - strand, within QEN71_RS02610 at 584.708 kb on - strand, within QEN71_RS02610 at 584.708 kb on - strand, within QEN71_RS02610 at 584.708 kb on - strand, within QEN71_RS02610 at 584.708 kb on - strand, within QEN71_RS02610 at 584.708 kb on - strand, within QEN71_RS02610 at 584.708 kb on - strand, within QEN71_RS02610 at 584.806 kb on + strand, within QEN71_RS02610 at 584.806 kb on + strand, within QEN71_RS02610 at 584.806 kb on + strand, within QEN71_RS02610 at 584.806 kb on + strand, within QEN71_RS02610 at 584.806 kb on + strand, within QEN71_RS02610 at 584.806 kb on + strand, within QEN71_RS02610 at 584.807 kb on - strand, within QEN71_RS02610 at 584.807 kb on - strand, within QEN71_RS02610 at 584.807 kb on - strand, within QEN71_RS02610 at 585.025 kb on + strand, within QEN71_RS02610 at 585.026 kb on - strand, within QEN71_RS02610 at 585.076 kb on + strand, within QEN71_RS02610 at 585.077 kb on - strand, within QEN71_RS02610 at 585.077 kb on - strand, within QEN71_RS02610 at 585.083 kb on - strand, within QEN71_RS02610 at 585.311 kb on + strand at 585.312 kb on - strand at 585.312 kb on - strand at 585.335 kb on + strand at 585.348 kb on + strand at 585.525 kb on + strand at 585.525 kb on + strand at 585.526 kb on - strand at 585.526 kb on - strand at 585.526 kb on - strand at 585.526 kb on - strand at 585.658 kb on + strand at 585.658 kb on + strand at 585.658 kb on + strand at 585.659 kb on - strand at 585.659 kb on - strand at 585.659 kb on - strand at 585.659 kb on - strand at 585.659 kb on - strand at 585.659 kb on - strand at 585.659 kb on - strand at 585.676 kb on + strand at 585.676 kb on + strand at 585.676 kb on + strand at 585.676 kb on + strand at 585.676 kb on + strand at 585.677 kb on - strand at 585.677 kb on - strand at 586.022 kb on - strand, within QEN71_RS02615 at 586.022 kb on - strand, within QEN71_RS02615 at 586.053 kb on + strand, within QEN71_RS02615 at 586.053 kb on + strand, within QEN71_RS02615 at 586.053 kb on + strand, within QEN71_RS02615 at 586.054 kb on - strand, within QEN71_RS02615 at 586.120 kb on + strand, within QEN71_RS02615 at 586.120 kb on + strand, within QEN71_RS02615 at 586.121 kb on - strand, within QEN71_RS02615 at 586.226 kb on - strand, within QEN71_RS02615 at 586.226 kb on - strand, within QEN71_RS02615 at 586.226 kb on - strand, within QEN71_RS02615
Per-strain Table
Position Strand Gene LocusTag Fraction LB_noSalt with Chloride 200 mM remove 583,256 + QEN71_RS02600 0.84 -0.8 583,257 - QEN71_RS02600 0.85 -0.2 583,257 - QEN71_RS02600 0.85 +0.4 583,257 - QEN71_RS02600 0.85 -1.9 583,369 + +0.2 583,370 - +1.3 583,697 + QEN71_RS02605 0.45 -1.2 583,732 + QEN71_RS02605 0.50 -0.0 583,732 + QEN71_RS02605 0.50 +0.1 583,733 - QEN71_RS02605 0.50 -1.5 583,733 - QEN71_RS02605 0.50 -1.7 583,755 + QEN71_RS02605 0.53 +0.2 583,755 + QEN71_RS02605 0.53 -0.1 583,755 + QEN71_RS02605 0.53 +0.3 583,756 - QEN71_RS02605 0.53 -1.0 583,834 + QEN71_RS02605 0.65 +1.4 583,834 + QEN71_RS02605 0.65 +0.8 583,834 + QEN71_RS02605 0.65 -0.9 583,835 - QEN71_RS02605 0.65 -1.2 583,835 - QEN71_RS02605 0.65 -0.7 583,835 - QEN71_RS02605 0.65 -0.1 583,939 + QEN71_RS02605 0.80 +0.1 583,939 + QEN71_RS02605 0.80 -0.5 583,940 - QEN71_RS02605 0.80 -0.1 583,940 - QEN71_RS02605 0.80 +0.0 583,940 - QEN71_RS02605 0.80 +0.3 583,940 - QEN71_RS02605 0.80 -1.6 583,940 - QEN71_RS02605 0.80 -0.4 583,940 - QEN71_RS02605 0.80 +0.3 583,940 - QEN71_RS02605 0.80 +0.4 583,948 - QEN71_RS02605 0.81 +0.2 584,012 + -1.0 584,012 + +0.5 584,012 + +1.0 584,012 + +0.0 584,012 + -1.3 584,012 + -0.5 584,012 + +0.7 584,013 - -0.9 584,013 - -0.6 584,013 - -1.1 584,013 - +0.4 584,013 - -0.8 584,013 - -1.0 584,013 - +1.2 584,013 - +1.8 584,013 - -0.4 584,013 - +0.2 584,077 + -0.3 584,077 + -0.0 584,077 + -1.9 584,077 + -1.2 584,077 + -1.0 584,078 - +0.8 584,078 - +0.3 584,118 + -0.3 584,118 + -0.5 584,118 + -0.0 584,118 + -0.3 584,119 - -0.1 584,119 - -0.1 584,119 - +0.9 584,119 - +0.2 584,119 - +0.7 584,119 - +0.3 584,119 - +1.0 584,129 + +0.4 584,129 + -1.5 584,130 - -0.1 584,130 - +1.6 584,153 + +1.7 584,401 + QEN71_RS02610 0.23 +0.8 584,420 - QEN71_RS02610 0.25 -0.2 584,420 - QEN71_RS02610 0.25 +1.7 584,420 - QEN71_RS02610 0.25 +0.0 584,420 - QEN71_RS02610 0.25 -0.3 584,708 - QEN71_RS02610 0.51 -0.5 584,708 - QEN71_RS02610 0.51 +0.1 584,708 - QEN71_RS02610 0.51 -0.9 584,708 - QEN71_RS02610 0.51 -0.2 584,708 - QEN71_RS02610 0.51 -0.0 584,708 - QEN71_RS02610 0.51 -0.2 584,806 + QEN71_RS02610 0.60 -0.6 584,806 + QEN71_RS02610 0.60 +0.2 584,806 + QEN71_RS02610 0.60 -0.1 584,806 + QEN71_RS02610 0.60 +1.8 584,806 + QEN71_RS02610 0.60 +0.3 584,806 + QEN71_RS02610 0.60 -0.4 584,807 - QEN71_RS02610 0.60 +0.1 584,807 - QEN71_RS02610 0.60 -1.4 584,807 - QEN71_RS02610 0.60 -1.0 585,025 + QEN71_RS02610 0.79 -1.3 585,026 - QEN71_RS02610 0.80 +1.0 585,076 + QEN71_RS02610 0.84 -1.0 585,077 - QEN71_RS02610 0.84 -0.0 585,077 - QEN71_RS02610 0.84 -0.8 585,083 - QEN71_RS02610 0.85 -0.0 585,311 + -0.9 585,312 - -0.6 585,312 - +0.4 585,335 + -0.1 585,348 + +0.0 585,525 + -1.5 585,525 + -1.9 585,526 - -0.2 585,526 - -1.1 585,526 - -0.3 585,526 - +0.2 585,658 + -0.0 585,658 + -0.2 585,658 + -0.7 585,659 - -1.9 585,659 - +0.2 585,659 - -1.0 585,659 - -1.1 585,659 - +0.1 585,659 - +2.0 585,659 - -1.0 585,676 + -0.3 585,676 + -0.5 585,676 + +0.5 585,676 + -0.0 585,676 + -0.4 585,677 - +0.7 585,677 - -0.3 586,022 - QEN71_RS02615 0.29 -0.7 586,022 - QEN71_RS02615 0.29 -0.4 586,053 + QEN71_RS02615 0.31 -0.0 586,053 + QEN71_RS02615 0.31 -0.8 586,053 + QEN71_RS02615 0.31 -0.9 586,054 - QEN71_RS02615 0.31 +0.0 586,120 + QEN71_RS02615 0.35 +0.2 586,120 + QEN71_RS02615 0.35 -0.3 586,121 - QEN71_RS02615 0.35 -0.3 586,226 - QEN71_RS02615 0.40 -0.8 586,226 - QEN71_RS02615 0.40 +0.6 586,226 - QEN71_RS02615 0.40 -0.7
Or see this region's nucleotide sequence