Experiment: LB_noSalt with Chloride 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS02505 and QEN71_RS02510 are separated by 148 nucleotides QEN71_RS02510 and QEN71_RS02515 are separated by 55 nucleotides QEN71_RS02515 and QEN71_RS02520 are separated by 426 nucleotides
QEN71_RS02505: QEN71_RS02505 - helix-turn-helix domain-containing protein, at 560,062 to 561,117
_RS02505
QEN71_RS02510: QEN71_RS02510 - cysteine hydrolase family protein, at 561,266 to 561,895
_RS02510
QEN71_RS02515: QEN71_RS02515 - TetR family transcriptional regulator, at 561,951 to 562,586
_RS02515
QEN71_RS02520: QEN71_RS02520 - efflux RND transporter periplasmic adaptor subunit, at 563,013 to 564,263
_RS02520
Position (kb) 561
562
563 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 561.093 kb on + strand at 561.094 kb on - strand at 561.094 kb on - strand at 561.157 kb on + strand at 561.314 kb on + strand at 561.314 kb on + strand at 561.314 kb on + strand at 561.314 kb on + strand at 561.315 kb on - strand at 561.315 kb on - strand at 561.315 kb on - strand at 561.315 kb on - strand at 561.315 kb on - strand at 561.315 kb on - strand at 561.315 kb on - strand at 561.341 kb on + strand, within QEN71_RS02510 at 561.518 kb on + strand, within QEN71_RS02510 at 561.518 kb on + strand, within QEN71_RS02510 at 561.518 kb on + strand, within QEN71_RS02510 at 561.518 kb on + strand, within QEN71_RS02510 at 561.519 kb on - strand, within QEN71_RS02510 at 561.519 kb on - strand, within QEN71_RS02510 at 561.519 kb on - strand, within QEN71_RS02510 at 561.592 kb on + strand, within QEN71_RS02510 at 561.592 kb on + strand, within QEN71_RS02510 at 561.593 kb on - strand, within QEN71_RS02510 at 561.593 kb on - strand, within QEN71_RS02510 at 561.593 kb on - strand, within QEN71_RS02510 at 561.598 kb on + strand, within QEN71_RS02510 at 561.598 kb on + strand, within QEN71_RS02510 at 561.598 kb on + strand, within QEN71_RS02510 at 561.598 kb on + strand, within QEN71_RS02510 at 561.598 kb on + strand, within QEN71_RS02510 at 561.598 kb on + strand, within QEN71_RS02510 at 561.598 kb on + strand, within QEN71_RS02510 at 561.598 kb on + strand, within QEN71_RS02510 at 561.599 kb on - strand, within QEN71_RS02510 at 561.599 kb on - strand, within QEN71_RS02510 at 561.599 kb on - strand, within QEN71_RS02510 at 561.599 kb on - strand, within QEN71_RS02510 at 561.599 kb on - strand, within QEN71_RS02510 at 561.611 kb on + strand, within QEN71_RS02510 at 561.611 kb on + strand, within QEN71_RS02510 at 561.611 kb on + strand, within QEN71_RS02510 at 561.611 kb on + strand, within QEN71_RS02510 at 561.611 kb on + strand, within QEN71_RS02510 at 561.611 kb on + strand, within QEN71_RS02510 at 561.611 kb on + strand, within QEN71_RS02510 at 561.611 kb on + strand, within QEN71_RS02510 at 561.612 kb on - strand, within QEN71_RS02510 at 561.612 kb on - strand, within QEN71_RS02510 at 561.612 kb on - strand, within QEN71_RS02510 at 561.612 kb on - strand, within QEN71_RS02510 at 561.612 kb on - strand, within QEN71_RS02510 at 561.612 kb on - strand, within QEN71_RS02510 at 561.612 kb on - strand, within QEN71_RS02510 at 561.612 kb on - strand, within QEN71_RS02510 at 561.612 kb on - strand, within QEN71_RS02510 at 561.612 kb on - strand, within QEN71_RS02510 at 561.612 kb on - strand, within QEN71_RS02510 at 561.612 kb on - strand, within QEN71_RS02510 at 561.612 kb on - strand, within QEN71_RS02510 at 561.612 kb on - strand, within QEN71_RS02510 at 561.612 kb on - strand, within QEN71_RS02510 at 561.613 kb on + strand, within QEN71_RS02510 at 561.613 kb on + strand, within QEN71_RS02510 at 561.613 kb on + strand, within QEN71_RS02510 at 561.613 kb on + strand, within QEN71_RS02510 at 561.613 kb on + strand, within QEN71_RS02510 at 561.613 kb on + strand, within QEN71_RS02510 at 561.613 kb on + strand, within QEN71_RS02510 at 561.613 kb on + strand, within QEN71_RS02510 at 561.613 kb on + strand, within QEN71_RS02510 at 561.614 kb on - strand, within QEN71_RS02510 at 561.614 kb on - strand, within QEN71_RS02510 at 561.614 kb on - strand, within QEN71_RS02510 at 561.614 kb on - strand, within QEN71_RS02510 at 561.614 kb on - strand, within QEN71_RS02510 at 561.614 kb on - strand, within QEN71_RS02510 at 561.614 kb on - strand, within QEN71_RS02510 at 561.614 kb on - strand, within QEN71_RS02510 at 561.614 kb on - strand, within QEN71_RS02510 at 561.708 kb on - strand, within QEN71_RS02510 at 561.854 kb on + strand at 561.854 kb on + strand at 561.854 kb on + strand at 561.854 kb on + strand at 561.854 kb on + strand at 561.855 kb on - strand at 561.855 kb on - strand at 561.855 kb on - strand at 561.855 kb on - strand at 561.855 kb on - strand at 561.855 kb on - strand at 561.893 kb on + strand at 561.893 kb on + strand at 561.893 kb on + strand at 561.893 kb on + strand at 561.893 kb on + strand at 561.893 kb on + strand at 561.894 kb on - strand at 561.894 kb on - strand at 561.894 kb on - strand at 561.894 kb on - strand at 561.894 kb on - strand at 561.894 kb on - strand at 561.894 kb on - strand at 561.939 kb on + strand at 561.939 kb on + strand at 561.939 kb on + strand at 561.939 kb on + strand at 561.940 kb on - strand at 561.940 kb on - strand at 561.940 kb on - strand at 562.115 kb on + strand, within QEN71_RS02515 at 562.116 kb on - strand, within QEN71_RS02515 at 562.154 kb on + strand, within QEN71_RS02515 at 562.154 kb on + strand, within QEN71_RS02515 at 562.154 kb on + strand, within QEN71_RS02515 at 562.154 kb on + strand, within QEN71_RS02515 at 562.154 kb on + strand, within QEN71_RS02515 at 562.155 kb on - strand, within QEN71_RS02515 at 562.155 kb on - strand, within QEN71_RS02515 at 562.155 kb on - strand, within QEN71_RS02515 at 562.155 kb on - strand, within QEN71_RS02515 at 562.155 kb on - strand, within QEN71_RS02515 at 562.320 kb on + strand, within QEN71_RS02515 at 562.441 kb on + strand, within QEN71_RS02515 at 562.442 kb on - strand, within QEN71_RS02515 at 562.442 kb on - strand, within QEN71_RS02515 at 562.442 kb on - strand, within QEN71_RS02515 at 562.442 kb on - strand, within QEN71_RS02515 at 562.442 kb on - strand, within QEN71_RS02515 at 562.442 kb on - strand, within QEN71_RS02515 at 562.442 kb on - strand, within QEN71_RS02515 at 562.590 kb on + strand at 562.590 kb on + strand at 562.590 kb on + strand at 562.591 kb on - strand at 562.591 kb on - strand at 562.591 kb on - strand at 562.591 kb on - strand at 562.591 kb on - strand at 562.602 kb on + strand at 562.602 kb on + strand at 562.642 kb on + strand at 562.642 kb on + strand at 562.643 kb on - strand at 562.666 kb on - strand at 562.666 kb on - strand at 562.719 kb on + strand at 562.719 kb on + strand at 562.737 kb on + strand at 562.737 kb on + strand at 562.737 kb on + strand at 562.737 kb on + strand at 562.737 kb on + strand at 562.737 kb on + strand at 562.738 kb on - strand at 562.738 kb on - strand at 562.738 kb on - strand at 562.738 kb on - strand at 562.738 kb on - strand at 562.739 kb on + strand at 562.739 kb on + strand at 562.739 kb on + strand at 562.739 kb on + strand at 562.739 kb on + strand at 562.740 kb on - strand at 562.740 kb on - strand at 562.740 kb on - strand at 562.740 kb on - strand at 562.741 kb on + strand at 562.741 kb on + strand at 562.741 kb on + strand at 562.741 kb on + strand at 562.741 kb on + strand at 562.741 kb on + strand at 562.741 kb on + strand at 562.741 kb on + strand at 562.742 kb on - strand at 562.742 kb on - strand at 562.742 kb on - strand at 562.742 kb on - strand at 562.742 kb on - strand at 562.742 kb on - strand at 562.742 kb on - strand at 562.743 kb on + strand at 562.743 kb on + strand at 562.743 kb on + strand at 562.743 kb on + strand at 562.743 kb on + strand at 562.743 kb on + strand at 562.743 kb on + strand at 562.744 kb on - strand at 562.744 kb on - strand at 562.744 kb on - strand at 562.744 kb on - strand at 562.744 kb on - strand at 562.744 kb on - strand at 562.746 kb on + strand at 562.746 kb on + strand at 562.746 kb on + strand at 562.746 kb on + strand at 562.746 kb on + strand at 562.746 kb on + strand at 562.747 kb on - strand at 562.747 kb on - strand at 562.747 kb on - strand at 562.747 kb on - strand at 562.788 kb on + strand at 562.788 kb on + strand at 562.788 kb on + strand at 562.789 kb on - strand at 562.789 kb on - strand at 562.789 kb on - strand at 562.789 kb on - strand at 562.791 kb on + strand at 562.792 kb on - strand at 563.041 kb on + strand at 563.041 kb on + strand at 563.041 kb on + strand at 563.041 kb on + strand at 563.042 kb on - strand at 563.065 kb on + strand at 563.066 kb on - strand at 563.066 kb on - strand at 563.283 kb on + strand, within QEN71_RS02520 at 563.283 kb on + strand, within QEN71_RS02520 at 563.283 kb on + strand, within QEN71_RS02520 at 563.283 kb on + strand, within QEN71_RS02520 at 563.283 kb on + strand, within QEN71_RS02520 at 563.283 kb on + strand, within QEN71_RS02520 at 563.283 kb on + strand, within QEN71_RS02520 at 563.284 kb on - strand, within QEN71_RS02520 at 563.284 kb on - strand, within QEN71_RS02520 at 563.284 kb on - strand, within QEN71_RS02520 at 563.304 kb on + strand, within QEN71_RS02520 at 563.304 kb on + strand, within QEN71_RS02520 at 563.304 kb on + strand, within QEN71_RS02520 at 563.304 kb on + strand, within QEN71_RS02520 at 563.305 kb on - strand, within QEN71_RS02520 at 563.305 kb on - strand, within QEN71_RS02520 at 563.305 kb on - strand, within QEN71_RS02520 at 563.305 kb on - strand, within QEN71_RS02520 at 563.305 kb on - strand, within QEN71_RS02520 at 563.430 kb on + strand, within QEN71_RS02520 at 563.430 kb on + strand, within QEN71_RS02520 at 563.431 kb on - strand, within QEN71_RS02520 at 563.431 kb on - strand, within QEN71_RS02520 at 563.431 kb on - strand, within QEN71_RS02520 at 563.431 kb on - strand, within QEN71_RS02520 at 563.521 kb on - strand, within QEN71_RS02520 at 563.583 kb on + strand, within QEN71_RS02520 at 563.583 kb on + strand, within QEN71_RS02520 at 563.583 kb on + strand, within QEN71_RS02520 at 563.583 kb on + strand, within QEN71_RS02520 at 563.583 kb on + strand, within QEN71_RS02520 at 563.583 kb on + strand, within QEN71_RS02520 at 563.583 kb on + strand, within QEN71_RS02520 at 563.583 kb on + strand, within QEN71_RS02520 at 563.583 kb on + strand, within QEN71_RS02520 at 563.583 kb on + strand, within QEN71_RS02520 at 563.584 kb on - strand, within QEN71_RS02520 at 563.584 kb on - strand, within QEN71_RS02520 at 563.584 kb on - strand, within QEN71_RS02520 at 563.584 kb on - strand, within QEN71_RS02520 at 563.584 kb on - strand, within QEN71_RS02520 at 563.584 kb on - strand, within QEN71_RS02520
Per-strain Table
Position Strand Gene LocusTag Fraction LB_noSalt with Chloride 200 mM remove 561,093 + +0.5 561,094 - -0.4 561,094 - -1.0 561,157 + +0.3 561,314 + +0.2 561,314 + -0.0 561,314 + -0.1 561,314 + -0.4 561,315 - +0.2 561,315 - +0.3 561,315 - +0.1 561,315 - +0.9 561,315 - -0.9 561,315 - +0.4 561,315 - -0.0 561,341 + QEN71_RS02510 0.12 -0.9 561,518 + QEN71_RS02510 0.40 +0.1 561,518 + QEN71_RS02510 0.40 -0.0 561,518 + QEN71_RS02510 0.40 +0.3 561,518 + QEN71_RS02510 0.40 -1.3 561,519 - QEN71_RS02510 0.40 -1.1 561,519 - QEN71_RS02510 0.40 -0.1 561,519 - QEN71_RS02510 0.40 +0.1 561,592 + QEN71_RS02510 0.52 -1.2 561,592 + QEN71_RS02510 0.52 -0.0 561,593 - QEN71_RS02510 0.52 -0.9 561,593 - QEN71_RS02510 0.52 +0.4 561,593 - QEN71_RS02510 0.52 +0.1 561,598 + QEN71_RS02510 0.53 -1.8 561,598 + QEN71_RS02510 0.53 +1.1 561,598 + QEN71_RS02510 0.53 -2.5 561,598 + QEN71_RS02510 0.53 -0.7 561,598 + QEN71_RS02510 0.53 +1.7 561,598 + QEN71_RS02510 0.53 -0.1 561,598 + QEN71_RS02510 0.53 -2.1 561,598 + QEN71_RS02510 0.53 -0.3 561,599 - QEN71_RS02510 0.53 +0.2 561,599 - QEN71_RS02510 0.53 -0.0 561,599 - QEN71_RS02510 0.53 +1.8 561,599 - QEN71_RS02510 0.53 +0.1 561,599 - QEN71_RS02510 0.53 -0.3 561,611 + QEN71_RS02510 0.55 -0.6 561,611 + QEN71_RS02510 0.55 +1.3 561,611 + QEN71_RS02510 0.55 +0.0 561,611 + QEN71_RS02510 0.55 -1.3 561,611 + QEN71_RS02510 0.55 -0.6 561,611 + QEN71_RS02510 0.55 -0.8 561,611 + QEN71_RS02510 0.55 -1.0 561,611 + QEN71_RS02510 0.55 -0.4 561,612 - QEN71_RS02510 0.55 -0.3 561,612 - QEN71_RS02510 0.55 -0.5 561,612 - QEN71_RS02510 0.55 -0.5 561,612 - QEN71_RS02510 0.55 -0.6 561,612 - QEN71_RS02510 0.55 -0.4 561,612 - QEN71_RS02510 0.55 -0.0 561,612 - QEN71_RS02510 0.55 -1.2 561,612 - QEN71_RS02510 0.55 -0.3 561,612 - QEN71_RS02510 0.55 -0.2 561,612 - QEN71_RS02510 0.55 -0.3 561,612 - QEN71_RS02510 0.55 +0.9 561,612 - QEN71_RS02510 0.55 -0.2 561,612 - QEN71_RS02510 0.55 -0.0 561,612 - QEN71_RS02510 0.55 -0.7 561,612 - QEN71_RS02510 0.55 -0.0 561,613 + QEN71_RS02510 0.55 -0.8 561,613 + QEN71_RS02510 0.55 -0.6 561,613 + QEN71_RS02510 0.55 +0.0 561,613 + QEN71_RS02510 0.55 -1.2 561,613 + QEN71_RS02510 0.55 -1.3 561,613 + QEN71_RS02510 0.55 -0.5 561,613 + QEN71_RS02510 0.55 -0.4 561,613 + QEN71_RS02510 0.55 -2.5 561,613 + QEN71_RS02510 0.55 -0.6 561,614 - QEN71_RS02510 0.55 -0.9 561,614 - QEN71_RS02510 0.55 -0.8 561,614 - QEN71_RS02510 0.55 +0.8 561,614 - QEN71_RS02510 0.55 +0.2 561,614 - QEN71_RS02510 0.55 -1.2 561,614 - QEN71_RS02510 0.55 -0.7 561,614 - QEN71_RS02510 0.55 +0.0 561,614 - QEN71_RS02510 0.55 -0.5 561,614 - QEN71_RS02510 0.55 -0.6 561,708 - QEN71_RS02510 0.70 -0.3 561,854 + -0.7 561,854 + -0.5 561,854 + -0.8 561,854 + -0.4 561,854 + -0.3 561,855 - -0.7 561,855 - +1.0 561,855 - -0.1 561,855 - +0.3 561,855 - -0.3 561,855 - +0.7 561,893 + -0.3 561,893 + -1.2 561,893 + -0.3 561,893 + -0.4 561,893 + -0.3 561,893 + -0.9 561,894 - +0.4 561,894 - -2.0 561,894 - -0.5 561,894 - -0.1 561,894 - +0.9 561,894 - -0.6 561,894 - +0.4 561,939 + +0.2 561,939 + +2.7 561,939 + +0.1 561,939 + -1.2 561,940 - +0.0 561,940 - -1.0 561,940 - -0.9 562,115 + QEN71_RS02515 0.26 +0.7 562,116 - QEN71_RS02515 0.26 -0.5 562,154 + QEN71_RS02515 0.32 -2.3 562,154 + QEN71_RS02515 0.32 -0.7 562,154 + QEN71_RS02515 0.32 -0.6 562,154 + QEN71_RS02515 0.32 -2.4 562,154 + QEN71_RS02515 0.32 -2.1 562,155 - QEN71_RS02515 0.32 -1.2 562,155 - QEN71_RS02515 0.32 -1.4 562,155 - QEN71_RS02515 0.32 -0.0 562,155 - QEN71_RS02515 0.32 -0.6 562,155 - QEN71_RS02515 0.32 -0.8 562,320 + QEN71_RS02515 0.58 -1.9 562,441 + QEN71_RS02515 0.77 -0.5 562,442 - QEN71_RS02515 0.77 +0.6 562,442 - QEN71_RS02515 0.77 -0.9 562,442 - QEN71_RS02515 0.77 -0.8 562,442 - QEN71_RS02515 0.77 -0.9 562,442 - QEN71_RS02515 0.77 -3.0 562,442 - QEN71_RS02515 0.77 -0.2 562,442 - QEN71_RS02515 0.77 -0.5 562,590 + -1.5 562,590 + -2.3 562,590 + -2.0 562,591 - -0.1 562,591 - -1.1 562,591 - +0.1 562,591 - -0.0 562,591 - -0.9 562,602 + -0.6 562,602 + -0.3 562,642 + -0.0 562,642 + -0.5 562,643 - -0.0 562,666 - -1.3 562,666 - +0.9 562,719 + -2.5 562,719 + -1.0 562,737 + -1.0 562,737 + -1.0 562,737 + -0.1 562,737 + -0.5 562,737 + +0.4 562,737 + -0.0 562,738 - +0.1 562,738 - +0.9 562,738 - +0.9 562,738 - -0.3 562,738 - -1.4 562,739 + -1.0 562,739 + -2.5 562,739 + -0.4 562,739 + -1.0 562,739 + -0.6 562,740 - +0.4 562,740 - -0.3 562,740 - +0.4 562,740 - +2.0 562,741 + -1.3 562,741 + +0.0 562,741 + -0.1 562,741 + -0.3 562,741 + +0.1 562,741 + -1.2 562,741 + -1.0 562,741 + +0.7 562,742 - -0.4 562,742 - -0.7 562,742 - -0.3 562,742 - +1.0 562,742 - -0.8 562,742 - -0.4 562,742 - -0.3 562,743 + +1.1 562,743 + +0.2 562,743 + +0.3 562,743 + -0.9 562,743 + -1.2 562,743 + +0.8 562,743 + -0.9 562,744 - -0.1 562,744 - +0.3 562,744 - -0.1 562,744 - -0.1 562,744 - +0.5 562,744 - +0.1 562,746 + -1.5 562,746 + -0.6 562,746 + -0.5 562,746 + -1.7 562,746 + -1.5 562,746 + +0.2 562,747 - +1.3 562,747 - -2.0 562,747 - -0.1 562,747 - -0.5 562,788 + -1.0 562,788 + -0.6 562,788 + -1.0 562,789 - -0.8 562,789 - -0.6 562,789 - +1.3 562,789 - -0.2 562,791 + -0.1 562,792 - -2.1 563,041 + -1.4 563,041 + -1.2 563,041 + -0.2 563,041 + -2.7 563,042 - +1.7 563,065 + +0.2 563,066 - +0.8 563,066 - -0.6 563,283 + QEN71_RS02520 0.22 -0.8 563,283 + QEN71_RS02520 0.22 -0.5 563,283 + QEN71_RS02520 0.22 -3.9 563,283 + QEN71_RS02520 0.22 -0.0 563,283 + QEN71_RS02520 0.22 -1.0 563,283 + QEN71_RS02520 0.22 -2.3 563,283 + QEN71_RS02520 0.22 -0.4 563,284 - QEN71_RS02520 0.22 -0.3 563,284 - QEN71_RS02520 0.22 +1.5 563,284 - QEN71_RS02520 0.22 -0.8 563,304 + QEN71_RS02520 0.23 -1.0 563,304 + QEN71_RS02520 0.23 -1.7 563,304 + QEN71_RS02520 0.23 -0.4 563,304 + QEN71_RS02520 0.23 -0.9 563,305 - QEN71_RS02520 0.23 +0.4 563,305 - QEN71_RS02520 0.23 +0.2 563,305 - QEN71_RS02520 0.23 -0.4 563,305 - QEN71_RS02520 0.23 -0.7 563,305 - QEN71_RS02520 0.23 +0.3 563,430 + QEN71_RS02520 0.33 -1.3 563,430 + QEN71_RS02520 0.33 -0.4 563,431 - QEN71_RS02520 0.33 -1.1 563,431 - QEN71_RS02520 0.33 -0.6 563,431 - QEN71_RS02520 0.33 +0.8 563,431 - QEN71_RS02520 0.33 +0.4 563,521 - QEN71_RS02520 0.41 -0.9 563,583 + QEN71_RS02520 0.46 -0.8 563,583 + QEN71_RS02520 0.46 -0.7 563,583 + QEN71_RS02520 0.46 +0.7 563,583 + QEN71_RS02520 0.46 +1.0 563,583 + QEN71_RS02520 0.46 -1.4 563,583 + QEN71_RS02520 0.46 -0.0 563,583 + QEN71_RS02520 0.46 -1.2 563,583 + QEN71_RS02520 0.46 -0.0 563,583 + QEN71_RS02520 0.46 -0.1 563,583 + QEN71_RS02520 0.46 +0.4 563,584 - QEN71_RS02520 0.46 -1.5 563,584 - QEN71_RS02520 0.46 +0.0 563,584 - QEN71_RS02520 0.46 -1.4 563,584 - QEN71_RS02520 0.46 -1.1 563,584 - QEN71_RS02520 0.46 +0.6 563,584 - QEN71_RS02520 0.46 -0.3
Or see this region's nucleotide sequence