Experiment: LB_noSalt with Chloride 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS00160 and QEN71_RS00165 are separated by 100 nucleotides QEN71_RS00165 and QEN71_RS00170 are separated by 103 nucleotides QEN71_RS00170 and QEN71_RS00175 are separated by 219 nucleotides
QEN71_RS00160: QEN71_RS00160 - methionyl-tRNA formyltransferase, at 33,896 to 34,879
_RS00160
QEN71_RS00165: QEN71_RS00165 - LysE family translocator, at 34,980 to 35,621
_RS00165
QEN71_RS00170: QEN71_RS00170 - zinc metalloprotease HtpX, at 35,725 to 36,582
_RS00170
QEN71_RS00175: QEN71_RS00175 - 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB, at 36,802 to 38,226
_RS00175
Position (kb) 35
36
37 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 34.877 kb on + strand at 34.877 kb on + strand at 34.877 kb on + strand at 34.877 kb on + strand at 34.877 kb on + strand at 34.877 kb on + strand at 34.878 kb on - strand at 34.878 kb on - strand at 34.878 kb on - strand at 34.878 kb on - strand at 34.878 kb on - strand at 34.902 kb on + strand at 34.902 kb on + strand at 34.902 kb on + strand at 34.902 kb on + strand at 34.902 kb on + strand at 34.902 kb on + strand at 34.902 kb on + strand at 34.902 kb on + strand at 34.902 kb on + strand at 34.902 kb on + strand at 34.902 kb on + strand at 34.903 kb on - strand at 34.903 kb on - strand at 34.903 kb on - strand at 34.903 kb on - strand at 34.903 kb on - strand at 34.903 kb on - strand at 34.903 kb on - strand at 34.903 kb on - strand at 34.903 kb on - strand at 34.943 kb on + strand at 34.943 kb on + strand at 34.944 kb on - strand at 35.058 kb on + strand, within QEN71_RS00165 at 35.058 kb on + strand, within QEN71_RS00165 at 35.058 kb on + strand, within QEN71_RS00165 at 35.058 kb on + strand, within QEN71_RS00165 at 35.058 kb on + strand, within QEN71_RS00165 at 35.058 kb on + strand, within QEN71_RS00165 at 35.058 kb on + strand, within QEN71_RS00165 at 35.058 kb on + strand, within QEN71_RS00165 at 35.058 kb on + strand, within QEN71_RS00165 at 35.058 kb on + strand, within QEN71_RS00165 at 35.058 kb on + strand, within QEN71_RS00165 at 35.058 kb on + strand, within QEN71_RS00165 at 35.058 kb on + strand, within QEN71_RS00165 at 35.058 kb on + strand, within QEN71_RS00165 at 35.058 kb on + strand, within QEN71_RS00165 at 35.058 kb on + strand, within QEN71_RS00165 at 35.058 kb on + strand, within QEN71_RS00165 at 35.058 kb on + strand, within QEN71_RS00165 at 35.059 kb on - strand, within QEN71_RS00165 at 35.059 kb on - strand, within QEN71_RS00165 at 35.059 kb on - strand, within QEN71_RS00165 at 35.059 kb on - strand, within QEN71_RS00165 at 35.059 kb on - strand, within QEN71_RS00165 at 35.059 kb on - strand, within QEN71_RS00165 at 35.059 kb on - strand, within QEN71_RS00165 at 35.059 kb on - strand, within QEN71_RS00165 at 35.059 kb on - strand, within QEN71_RS00165 at 35.059 kb on - strand, within QEN71_RS00165 at 35.059 kb on - strand, within QEN71_RS00165 at 35.059 kb on - strand, within QEN71_RS00165 at 35.120 kb on - strand, within QEN71_RS00165 at 35.190 kb on - strand, within QEN71_RS00165 at 35.226 kb on + strand, within QEN71_RS00165 at 35.226 kb on + strand, within QEN71_RS00165 at 35.226 kb on + strand, within QEN71_RS00165 at 35.226 kb on + strand, within QEN71_RS00165 at 35.227 kb on - strand, within QEN71_RS00165 at 35.227 kb on - strand, within QEN71_RS00165 at 35.235 kb on + strand, within QEN71_RS00165 at 35.235 kb on + strand, within QEN71_RS00165 at 35.236 kb on - strand, within QEN71_RS00165 at 35.236 kb on - strand, within QEN71_RS00165 at 35.236 kb on - strand, within QEN71_RS00165 at 35.645 kb on - strand at 35.645 kb on - strand at 35.645 kb on - strand at 35.648 kb on + strand at 35.648 kb on + strand at 35.648 kb on + strand at 35.648 kb on + strand at 35.660 kb on + strand at 35.692 kb on + strand at 35.724 kb on + strand at 35.724 kb on + strand at 35.724 kb on + strand at 35.724 kb on + strand at 35.724 kb on + strand at 35.724 kb on + strand at 35.724 kb on + strand at 35.725 kb on - strand at 35.725 kb on - strand at 35.725 kb on - strand at 35.725 kb on - strand at 35.725 kb on - strand at 35.725 kb on - strand at 35.725 kb on - strand at 35.725 kb on - strand at 35.861 kb on - strand, within QEN71_RS00170 at 35.893 kb on + strand, within QEN71_RS00170 at 35.893 kb on + strand, within QEN71_RS00170 at 35.893 kb on + strand, within QEN71_RS00170 at 35.893 kb on + strand, within QEN71_RS00170 at 35.893 kb on + strand, within QEN71_RS00170 at 35.893 kb on + strand, within QEN71_RS00170 at 35.893 kb on + strand, within QEN71_RS00170 at 35.894 kb on - strand, within QEN71_RS00170 at 35.894 kb on - strand, within QEN71_RS00170 at 35.894 kb on - strand, within QEN71_RS00170 at 35.894 kb on - strand, within QEN71_RS00170 at 35.894 kb on - strand, within QEN71_RS00170 at 35.894 kb on - strand, within QEN71_RS00170 at 35.894 kb on - strand, within QEN71_RS00170 at 35.894 kb on - strand, within QEN71_RS00170 at 35.894 kb on - strand, within QEN71_RS00170 at 35.935 kb on + strand, within QEN71_RS00170 at 35.936 kb on - strand, within QEN71_RS00170 at 35.936 kb on - strand, within QEN71_RS00170 at 35.989 kb on + strand, within QEN71_RS00170 at 35.990 kb on - strand, within QEN71_RS00170 at 35.990 kb on - strand, within QEN71_RS00170 at 36.410 kb on - strand, within QEN71_RS00170 at 36.565 kb on - strand at 36.565 kb on - strand at 36.581 kb on - strand at 36.749 kb on + strand at 36.749 kb on + strand at 36.749 kb on + strand at 36.749 kb on + strand at 36.750 kb on - strand at 36.750 kb on - strand at 36.750 kb on - strand at 37.108 kb on - strand, within QEN71_RS00175 at 37.168 kb on + strand, within QEN71_RS00175 at 37.169 kb on - strand, within QEN71_RS00175 at 37.169 kb on - strand, within QEN71_RS00175 at 37.226 kb on - strand, within QEN71_RS00175 at 37.330 kb on + strand, within QEN71_RS00175 at 37.331 kb on - strand, within QEN71_RS00175 at 37.459 kb on + strand, within QEN71_RS00175 at 37.459 kb on + strand, within QEN71_RS00175 at 37.459 kb on + strand, within QEN71_RS00175 at 37.460 kb on - strand, within QEN71_RS00175 at 37.460 kb on - strand, within QEN71_RS00175 at 37.460 kb on - strand, within QEN71_RS00175 at 37.528 kb on - strand, within QEN71_RS00175
Per-strain Table
Position Strand Gene LocusTag Fraction LB_noSalt with Chloride 200 mM remove 34,877 + +0.2 34,877 + -0.1 34,877 + -1.9 34,877 + -1.3 34,877 + -0.3 34,877 + -0.2 34,878 - +0.2 34,878 - -0.3 34,878 - -0.8 34,878 - -0.5 34,878 - -0.6 34,902 + +0.5 34,902 + -0.4 34,902 + -0.8 34,902 + +0.4 34,902 + +1.3 34,902 + -1.7 34,902 + +0.2 34,902 + +0.5 34,902 + +0.6 34,902 + +0.0 34,902 + +0.1 34,903 - +0.4 34,903 - +0.2 34,903 - -0.1 34,903 - -0.0 34,903 - -1.2 34,903 - -0.1 34,903 - +0.2 34,903 - +0.7 34,903 - +0.7 34,943 + +1.3 34,943 + -0.5 34,944 - -1.0 35,058 + QEN71_RS00165 0.12 +0.0 35,058 + QEN71_RS00165 0.12 -0.8 35,058 + QEN71_RS00165 0.12 +0.1 35,058 + QEN71_RS00165 0.12 -0.1 35,058 + QEN71_RS00165 0.12 +0.8 35,058 + QEN71_RS00165 0.12 -1.4 35,058 + QEN71_RS00165 0.12 +0.3 35,058 + QEN71_RS00165 0.12 +0.6 35,058 + QEN71_RS00165 0.12 -0.0 35,058 + QEN71_RS00165 0.12 -1.1 35,058 + QEN71_RS00165 0.12 -0.3 35,058 + QEN71_RS00165 0.12 -0.0 35,058 + QEN71_RS00165 0.12 -0.6 35,058 + QEN71_RS00165 0.12 -1.1 35,058 + QEN71_RS00165 0.12 -0.5 35,058 + QEN71_RS00165 0.12 -1.2 35,058 + QEN71_RS00165 0.12 -0.6 35,058 + QEN71_RS00165 0.12 +0.0 35,059 - QEN71_RS00165 0.12 +0.6 35,059 - QEN71_RS00165 0.12 -0.1 35,059 - QEN71_RS00165 0.12 +0.6 35,059 - QEN71_RS00165 0.12 -0.2 35,059 - QEN71_RS00165 0.12 +0.0 35,059 - QEN71_RS00165 0.12 +0.2 35,059 - QEN71_RS00165 0.12 -0.0 35,059 - QEN71_RS00165 0.12 -2.5 35,059 - QEN71_RS00165 0.12 +0.3 35,059 - QEN71_RS00165 0.12 +1.3 35,059 - QEN71_RS00165 0.12 +0.8 35,059 - QEN71_RS00165 0.12 -0.8 35,120 - QEN71_RS00165 0.22 +0.3 35,190 - QEN71_RS00165 0.33 -1.0 35,226 + QEN71_RS00165 0.38 -0.8 35,226 + QEN71_RS00165 0.38 +1.0 35,226 + QEN71_RS00165 0.38 -0.3 35,226 + QEN71_RS00165 0.38 +0.1 35,227 - QEN71_RS00165 0.38 -0.2 35,227 - QEN71_RS00165 0.38 +0.6 35,235 + QEN71_RS00165 0.40 +1.0 35,235 + QEN71_RS00165 0.40 -0.1 35,236 - QEN71_RS00165 0.40 -0.1 35,236 - QEN71_RS00165 0.40 +0.2 35,236 - QEN71_RS00165 0.40 +0.3 35,645 - -1.3 35,645 - -1.1 35,645 - -0.0 35,648 + +1.3 35,648 + +0.0 35,648 + +0.7 35,648 + -0.7 35,660 + -1.8 35,692 + -0.7 35,724 + -1.1 35,724 + -0.3 35,724 + +0.2 35,724 + +0.1 35,724 + +1.4 35,724 + -0.9 35,724 + -0.8 35,725 - -0.5 35,725 - -1.0 35,725 - -0.3 35,725 - -0.8 35,725 - +0.6 35,725 - -2.0 35,725 - -1.1 35,725 - -0.3 35,861 - QEN71_RS00170 0.16 -0.5 35,893 + QEN71_RS00170 0.20 -0.6 35,893 + QEN71_RS00170 0.20 -1.0 35,893 + QEN71_RS00170 0.20 -0.1 35,893 + QEN71_RS00170 0.20 -0.6 35,893 + QEN71_RS00170 0.20 -2.2 35,893 + QEN71_RS00170 0.20 -1.1 35,893 + QEN71_RS00170 0.20 -2.0 35,894 - QEN71_RS00170 0.20 -0.1 35,894 - QEN71_RS00170 0.20 -1.5 35,894 - QEN71_RS00170 0.20 -1.8 35,894 - QEN71_RS00170 0.20 -1.8 35,894 - QEN71_RS00170 0.20 -2.1 35,894 - QEN71_RS00170 0.20 -1.0 35,894 - QEN71_RS00170 0.20 -0.2 35,894 - QEN71_RS00170 0.20 +0.7 35,894 - QEN71_RS00170 0.20 -1.8 35,935 + QEN71_RS00170 0.24 -1.1 35,936 - QEN71_RS00170 0.25 -1.1 35,936 - QEN71_RS00170 0.25 -0.6 35,989 + QEN71_RS00170 0.31 -3.3 35,990 - QEN71_RS00170 0.31 -1.5 35,990 - QEN71_RS00170 0.31 +0.6 36,410 - QEN71_RS00170 0.80 -1.2 36,565 - +0.0 36,565 - -0.5 36,581 - -0.8 36,749 + -0.1 36,749 + -0.1 36,749 + +0.2 36,749 + +0.9 36,750 - -0.7 36,750 - +1.3 36,750 - +1.1 37,108 - QEN71_RS00175 0.21 -1.0 37,168 + QEN71_RS00175 0.26 +0.8 37,169 - QEN71_RS00175 0.26 +0.0 37,169 - QEN71_RS00175 0.26 -1.0 37,226 - QEN71_RS00175 0.30 +1.3 37,330 + QEN71_RS00175 0.37 -0.2 37,331 - QEN71_RS00175 0.37 -2.1 37,459 + QEN71_RS00175 0.46 -0.3 37,459 + QEN71_RS00175 0.46 -1.6 37,459 + QEN71_RS00175 0.46 -1.6 37,460 - QEN71_RS00175 0.46 -0.2 37,460 - QEN71_RS00175 0.46 +0.0 37,460 - QEN71_RS00175 0.46 +1.5 37,528 - QEN71_RS00175 0.51 +0.8
Or see this region's nucleotide sequence