Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_04215 and MIT1002_04216 are separated by 177 nucleotides MIT1002_04216 and MIT1002_04217 overlap by 1 nucleotides MIT1002_04217 and MIT1002_04218 overlap by 40 nucleotides MIT1002_04218 and MIT1002_04219 overlap by 14 nucleotides MIT1002_04219 and MIT1002_04220 are separated by 9 nucleotides
MIT1002_04215: MIT1002_04215 - Bacteriophytochrome cph2, at 83,615 to 84,757
_04215
MIT1002_04216: MIT1002_04216 - CheW-like domain protein, at 84,935 to 85,450
_04216
MIT1002_04217: MIT1002_04217 - Chemotaxis protein methyltransferase, at 85,450 to 86,547
_04217
MIT1002_04218: MIT1002_04218 - hypothetical protein, at 86,508 to 86,780
_04218
MIT1002_04219: MIT1002_04219 - CheW-like domain protein, at 86,767 to 87,306
_04219
MIT1002_04220: MIT1002_04220 - Ribose and galactose chemoreceptor protein, at 87,316 to 88,779
_04220
Position (kb) 85
86
87 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 84.495 kb on + strand, within MIT1002_04215 at 84.501 kb on - strand, within MIT1002_04215 at 84.545 kb on + strand, within MIT1002_04215 at 84.553 kb on - strand, within MIT1002_04215 at 84.626 kb on - strand, within MIT1002_04215 at 84.634 kb on - strand, within MIT1002_04215 at 84.713 kb on - strand at 84.907 kb on - strand at 84.916 kb on + strand at 84.924 kb on - strand at 84.924 kb on - strand at 84.931 kb on - strand at 84.931 kb on - strand at 84.931 kb on - strand at 85.009 kb on + strand, within MIT1002_04216 at 85.010 kb on + strand, within MIT1002_04216 at 85.010 kb on + strand, within MIT1002_04216 at 85.010 kb on + strand, within MIT1002_04216 at 85.017 kb on - strand, within MIT1002_04216 at 85.034 kb on - strand, within MIT1002_04216 at 85.036 kb on + strand, within MIT1002_04216 at 85.043 kb on - strand, within MIT1002_04216 at 85.107 kb on + strand, within MIT1002_04216 at 85.114 kb on + strand, within MIT1002_04216 at 85.114 kb on + strand, within MIT1002_04216 at 85.114 kb on + strand, within MIT1002_04216 at 85.122 kb on - strand, within MIT1002_04216 at 85.122 kb on - strand, within MIT1002_04216 at 85.122 kb on - strand, within MIT1002_04216 at 85.122 kb on - strand, within MIT1002_04216 at 85.156 kb on - strand, within MIT1002_04216 at 85.158 kb on + strand, within MIT1002_04216 at 85.166 kb on - strand, within MIT1002_04216 at 85.168 kb on + strand, within MIT1002_04216 at 85.176 kb on - strand, within MIT1002_04216 at 85.176 kb on - strand, within MIT1002_04216 at 85.190 kb on + strand, within MIT1002_04216 at 85.251 kb on + strand, within MIT1002_04216 at 85.254 kb on - strand, within MIT1002_04216 at 85.260 kb on + strand, within MIT1002_04216 at 85.260 kb on + strand, within MIT1002_04216 at 85.260 kb on + strand, within MIT1002_04216 at 85.260 kb on + strand, within MIT1002_04216 at 85.268 kb on - strand, within MIT1002_04216 at 85.268 kb on - strand, within MIT1002_04216 at 85.268 kb on - strand, within MIT1002_04216 at 85.278 kb on - strand, within MIT1002_04216 at 85.278 kb on - strand, within MIT1002_04216 at 85.278 kb on - strand, within MIT1002_04216 at 85.278 kb on - strand, within MIT1002_04216 at 85.321 kb on + strand, within MIT1002_04216 at 85.329 kb on - strand, within MIT1002_04216 at 85.457 kb on - strand at 85.604 kb on + strand, within MIT1002_04217 at 85.611 kb on + strand, within MIT1002_04217 at 85.621 kb on + strand, within MIT1002_04217 at 85.640 kb on + strand, within MIT1002_04217 at 85.642 kb on + strand, within MIT1002_04217 at 85.719 kb on + strand, within MIT1002_04217 at 85.727 kb on + strand, within MIT1002_04217 at 85.777 kb on + strand, within MIT1002_04217 at 85.777 kb on + strand, within MIT1002_04217 at 85.777 kb on + strand, within MIT1002_04217 at 85.777 kb on + strand, within MIT1002_04217 at 85.777 kb on + strand, within MIT1002_04217 at 85.777 kb on + strand, within MIT1002_04217 at 85.779 kb on + strand, within MIT1002_04217 at 85.784 kb on - strand, within MIT1002_04217 at 85.785 kb on - strand, within MIT1002_04217 at 85.785 kb on - strand, within MIT1002_04217 at 85.785 kb on - strand, within MIT1002_04217 at 85.785 kb on - strand, within MIT1002_04217 at 85.785 kb on - strand, within MIT1002_04217 at 85.785 kb on - strand, within MIT1002_04217 at 85.787 kb on + strand, within MIT1002_04217 at 85.823 kb on - strand, within MIT1002_04217 at 85.823 kb on - strand, within MIT1002_04217 at 85.831 kb on - strand, within MIT1002_04217 at 85.832 kb on + strand, within MIT1002_04217 at 85.840 kb on - strand, within MIT1002_04217 at 85.920 kb on + strand, within MIT1002_04217 at 85.921 kb on - strand, within MIT1002_04217 at 85.950 kb on + strand, within MIT1002_04217 at 85.969 kb on - strand, within MIT1002_04217 at 85.969 kb on - strand, within MIT1002_04217 at 85.969 kb on - strand, within MIT1002_04217 at 85.969 kb on - strand, within MIT1002_04217 at 85.972 kb on - strand, within MIT1002_04217 at 86.008 kb on - strand, within MIT1002_04217 at 86.008 kb on - strand, within MIT1002_04217 at 86.119 kb on - strand, within MIT1002_04217 at 86.144 kb on - strand, within MIT1002_04217 at 86.153 kb on + strand, within MIT1002_04217 at 86.154 kb on + strand, within MIT1002_04217 at 86.154 kb on + strand, within MIT1002_04217 at 86.154 kb on + strand, within MIT1002_04217 at 86.154 kb on + strand, within MIT1002_04217 at 86.161 kb on - strand, within MIT1002_04217 at 86.162 kb on - strand, within MIT1002_04217 at 86.162 kb on - strand, within MIT1002_04217 at 86.162 kb on - strand, within MIT1002_04217 at 86.162 kb on - strand, within MIT1002_04217 at 86.162 kb on - strand, within MIT1002_04217 at 86.169 kb on + strand, within MIT1002_04217 at 86.185 kb on + strand, within MIT1002_04217 at 86.249 kb on + strand, within MIT1002_04217 at 86.297 kb on + strand, within MIT1002_04217 at 86.297 kb on + strand, within MIT1002_04217 at 86.305 kb on - strand, within MIT1002_04217 at 86.320 kb on + strand, within MIT1002_04217 at 86.320 kb on + strand, within MIT1002_04217 at 86.328 kb on - strand, within MIT1002_04217 at 86.328 kb on - strand, within MIT1002_04217 at 86.388 kb on + strand, within MIT1002_04217 at 86.413 kb on + strand, within MIT1002_04217 at 86.414 kb on + strand, within MIT1002_04217 at 86.428 kb on - strand, within MIT1002_04217 at 86.428 kb on - strand, within MIT1002_04217 at 86.473 kb on + strand at 86.497 kb on + strand at 86.497 kb on + strand at 86.497 kb on + strand at 86.498 kb on + strand at 86.506 kb on - strand at 86.506 kb on - strand at 86.514 kb on + strand at 86.518 kb on - strand at 86.522 kb on - strand at 86.553 kb on + strand, within MIT1002_04218 at 86.553 kb on + strand, within MIT1002_04218 at 86.561 kb on + strand, within MIT1002_04218 at 86.561 kb on - strand, within MIT1002_04218 at 86.561 kb on - strand, within MIT1002_04218 at 86.561 kb on - strand, within MIT1002_04218 at 86.561 kb on - strand, within MIT1002_04218 at 86.561 kb on - strand, within MIT1002_04218 at 86.569 kb on - strand, within MIT1002_04218 at 86.569 kb on - strand, within MIT1002_04218 at 86.569 kb on - strand, within MIT1002_04218 at 86.569 kb on - strand, within MIT1002_04218 at 86.580 kb on + strand, within MIT1002_04218 at 86.580 kb on + strand, within MIT1002_04218 at 86.588 kb on - strand, within MIT1002_04218 at 86.601 kb on + strand, within MIT1002_04218 at 86.603 kb on + strand, within MIT1002_04218 at 86.724 kb on - strand, within MIT1002_04218 at 86.781 kb on + strand at 86.781 kb on + strand at 86.781 kb on + strand at 86.786 kb on + strand at 86.789 kb on - strand at 86.791 kb on + strand at 86.794 kb on - strand at 86.838 kb on + strand, within MIT1002_04219 at 86.846 kb on - strand, within MIT1002_04219 at 86.857 kb on - strand, within MIT1002_04219 at 86.873 kb on + strand, within MIT1002_04219 at 86.894 kb on + strand, within MIT1002_04219 at 86.931 kb on - strand, within MIT1002_04219 at 87.061 kb on - strand, within MIT1002_04219 at 87.076 kb on + strand, within MIT1002_04219 at 87.076 kb on + strand, within MIT1002_04219 at 87.077 kb on + strand, within MIT1002_04219 at 87.143 kb on - strand, within MIT1002_04219 at 87.153 kb on - strand, within MIT1002_04219 at 87.159 kb on - strand, within MIT1002_04219 at 87.161 kb on - strand, within MIT1002_04219 at 87.177 kb on + strand, within MIT1002_04219 at 87.185 kb on - strand, within MIT1002_04219 at 87.211 kb on + strand, within MIT1002_04219 at 87.211 kb on + strand, within MIT1002_04219 at 87.220 kb on - strand, within MIT1002_04219 at 87.297 kb on + strand at 87.297 kb on + strand at 87.301 kb on + strand at 87.314 kb on - strand at 87.315 kb on - strand at 87.423 kb on + strand at 87.430 kb on + strand at 87.456 kb on - strand at 87.461 kb on + strand at 87.461 kb on + strand at 87.468 kb on + strand, within MIT1002_04220 at 87.483 kb on + strand, within MIT1002_04220 at 87.483 kb on - strand, within MIT1002_04220 at 87.488 kb on + strand, within MIT1002_04220 at 87.510 kb on - strand, within MIT1002_04220 at 87.544 kb on + strand, within MIT1002_04220 at 87.544 kb on + strand, within MIT1002_04220
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 6 remove 84,495 + MIT1002_04215 0.77 -0.4 84,501 - MIT1002_04215 0.78 -2.6 84,545 + MIT1002_04215 0.81 -2.3 84,553 - MIT1002_04215 0.82 +0.6 84,626 - MIT1002_04215 0.88 +0.0 84,634 - MIT1002_04215 0.89 -1.0 84,713 - -2.9 84,907 - -0.6 84,916 + +0.4 84,924 - -1.4 84,924 - -1.8 84,931 - -0.1 84,931 - -2.1 84,931 - -0.6 85,009 + MIT1002_04216 0.14 +0.4 85,010 + MIT1002_04216 0.15 +0.3 85,010 + MIT1002_04216 0.15 +1.8 85,010 + MIT1002_04216 0.15 -0.5 85,017 - MIT1002_04216 0.16 -1.0 85,034 - MIT1002_04216 0.19 +0.2 85,036 + MIT1002_04216 0.20 +0.7 85,043 - MIT1002_04216 0.21 +0.1 85,107 + MIT1002_04216 0.33 -0.7 85,114 + MIT1002_04216 0.35 -0.5 85,114 + MIT1002_04216 0.35 -2.5 85,114 + MIT1002_04216 0.35 -2.8 85,122 - MIT1002_04216 0.36 +0.2 85,122 - MIT1002_04216 0.36 -0.2 85,122 - MIT1002_04216 0.36 -0.6 85,122 - MIT1002_04216 0.36 -1.0 85,156 - MIT1002_04216 0.43 +0.1 85,158 + MIT1002_04216 0.43 -0.0 85,166 - MIT1002_04216 0.45 +1.0 85,168 + MIT1002_04216 0.45 +0.5 85,176 - MIT1002_04216 0.47 -0.4 85,176 - MIT1002_04216 0.47 +1.0 85,190 + MIT1002_04216 0.49 -1.6 85,251 + MIT1002_04216 0.61 -0.2 85,254 - MIT1002_04216 0.62 +0.4 85,260 + MIT1002_04216 0.63 +0.4 85,260 + MIT1002_04216 0.63 +1.6 85,260 + MIT1002_04216 0.63 +0.4 85,260 + MIT1002_04216 0.63 +0.0 85,268 - MIT1002_04216 0.65 -0.5 85,268 - MIT1002_04216 0.65 +0.1 85,268 - MIT1002_04216 0.65 -0.4 85,278 - MIT1002_04216 0.66 -2.7 85,278 - MIT1002_04216 0.66 -0.5 85,278 - MIT1002_04216 0.66 +0.2 85,278 - MIT1002_04216 0.66 +0.0 85,321 + MIT1002_04216 0.75 +0.2 85,329 - MIT1002_04216 0.76 -0.4 85,457 - +1.6 85,604 + MIT1002_04217 0.14 -1.2 85,611 + MIT1002_04217 0.15 +1.1 85,621 + MIT1002_04217 0.16 -2.2 85,640 + MIT1002_04217 0.17 -0.9 85,642 + MIT1002_04217 0.17 -2.3 85,719 + MIT1002_04217 0.24 -3.1 85,727 + MIT1002_04217 0.25 -0.5 85,777 + MIT1002_04217 0.30 -1.0 85,777 + MIT1002_04217 0.30 +0.2 85,777 + MIT1002_04217 0.30 +1.2 85,777 + MIT1002_04217 0.30 +0.4 85,777 + MIT1002_04217 0.30 +0.2 85,777 + MIT1002_04217 0.30 -1.6 85,779 + MIT1002_04217 0.30 +0.7 85,784 - MIT1002_04217 0.30 +0.3 85,785 - MIT1002_04217 0.31 +1.3 85,785 - MIT1002_04217 0.31 +0.9 85,785 - MIT1002_04217 0.31 +0.6 85,785 - MIT1002_04217 0.31 +1.0 85,785 - MIT1002_04217 0.31 -0.1 85,785 - MIT1002_04217 0.31 +0.4 85,787 + MIT1002_04217 0.31 -0.4 85,823 - MIT1002_04217 0.34 -1.7 85,823 - MIT1002_04217 0.34 +0.4 85,831 - MIT1002_04217 0.35 -0.9 85,832 + MIT1002_04217 0.35 +0.4 85,840 - MIT1002_04217 0.36 +1.0 85,920 + MIT1002_04217 0.43 +1.0 85,921 - MIT1002_04217 0.43 -1.5 85,950 + MIT1002_04217 0.46 +0.7 85,969 - MIT1002_04217 0.47 +2.2 85,969 - MIT1002_04217 0.47 +0.3 85,969 - MIT1002_04217 0.47 -0.2 85,969 - MIT1002_04217 0.47 +0.8 85,972 - MIT1002_04217 0.48 -1.7 86,008 - MIT1002_04217 0.51 +0.5 86,008 - MIT1002_04217 0.51 +0.5 86,119 - MIT1002_04217 0.61 -0.4 86,144 - MIT1002_04217 0.63 -0.6 86,153 + MIT1002_04217 0.64 +0.3 86,154 + MIT1002_04217 0.64 +1.6 86,154 + MIT1002_04217 0.64 +0.5 86,154 + MIT1002_04217 0.64 -0.7 86,154 + MIT1002_04217 0.64 +1.0 86,161 - MIT1002_04217 0.65 +2.0 86,162 - MIT1002_04217 0.65 +0.8 86,162 - MIT1002_04217 0.65 +0.7 86,162 - MIT1002_04217 0.65 +0.7 86,162 - MIT1002_04217 0.65 +0.5 86,162 - MIT1002_04217 0.65 +0.2 86,169 + MIT1002_04217 0.65 +1.4 86,185 + MIT1002_04217 0.67 +0.2 86,249 + MIT1002_04217 0.73 -0.5 86,297 + MIT1002_04217 0.77 +1.7 86,297 + MIT1002_04217 0.77 +1.5 86,305 - MIT1002_04217 0.78 +1.0 86,320 + MIT1002_04217 0.79 -0.4 86,320 + MIT1002_04217 0.79 +0.1 86,328 - MIT1002_04217 0.80 +0.1 86,328 - MIT1002_04217 0.80 -0.2 86,388 + MIT1002_04217 0.85 -2.4 86,413 + MIT1002_04217 0.88 -1.2 86,414 + MIT1002_04217 0.88 +1.1 86,428 - MIT1002_04217 0.89 +0.9 86,428 - MIT1002_04217 0.89 +0.4 86,473 + -0.8 86,497 + +1.2 86,497 + -1.7 86,497 + +0.2 86,498 + -0.6 86,506 - -0.5 86,506 - -0.1 86,514 + +0.9 86,518 - +1.2 86,522 - -1.0 86,553 + MIT1002_04218 0.16 -1.1 86,553 + MIT1002_04218 0.16 -0.7 86,561 + MIT1002_04218 0.19 +2.5 86,561 - MIT1002_04218 0.19 -0.2 86,561 - MIT1002_04218 0.19 -0.3 86,561 - MIT1002_04218 0.19 +0.0 86,561 - MIT1002_04218 0.19 -1.3 86,561 - MIT1002_04218 0.19 -0.2 86,569 - MIT1002_04218 0.22 -0.0 86,569 - MIT1002_04218 0.22 +0.2 86,569 - MIT1002_04218 0.22 -0.6 86,569 - MIT1002_04218 0.22 +1.5 86,580 + MIT1002_04218 0.26 +0.5 86,580 + MIT1002_04218 0.26 +0.1 86,588 - MIT1002_04218 0.29 +1.0 86,601 + MIT1002_04218 0.34 -0.2 86,603 + MIT1002_04218 0.35 -2.3 86,724 - MIT1002_04218 0.79 +0.1 86,781 + -1.8 86,781 + -0.0 86,781 + +1.0 86,786 + +1.7 86,789 - +1.2 86,791 + -0.8 86,794 - -1.5 86,838 + MIT1002_04219 0.13 +0.8 86,846 - MIT1002_04219 0.15 +0.2 86,857 - MIT1002_04219 0.17 -1.1 86,873 + MIT1002_04219 0.20 -0.8 86,894 + MIT1002_04219 0.24 +0.3 86,931 - MIT1002_04219 0.30 -0.0 87,061 - MIT1002_04219 0.54 +0.1 87,076 + MIT1002_04219 0.57 -0.3 87,076 + MIT1002_04219 0.57 +1.1 87,077 + MIT1002_04219 0.57 -0.5 87,143 - MIT1002_04219 0.70 +0.5 87,153 - MIT1002_04219 0.71 +0.2 87,159 - MIT1002_04219 0.73 +1.6 87,161 - MIT1002_04219 0.73 +1.0 87,177 + MIT1002_04219 0.76 -1.0 87,185 - MIT1002_04219 0.77 -0.0 87,211 + MIT1002_04219 0.82 -0.8 87,211 + MIT1002_04219 0.82 +0.5 87,220 - MIT1002_04219 0.84 +0.9 87,297 + -0.6 87,297 + +0.8 87,301 + -0.2 87,314 - +1.3 87,315 - +0.2 87,423 + +0.3 87,430 + -0.4 87,456 - +0.7 87,461 + +1.8 87,461 + -0.1 87,468 + MIT1002_04220 0.10 -0.6 87,483 + MIT1002_04220 0.11 -1.1 87,483 - MIT1002_04220 0.11 -0.5 87,488 + MIT1002_04220 0.12 +0.9 87,510 - MIT1002_04220 0.13 -1.6 87,544 + MIT1002_04220 0.16 -0.6 87,544 + MIT1002_04220 0.16 -0.4
Or see this region's nucleotide sequence