Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_04131

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_04130 and MIT1002_04131 are separated by 10 nucleotidesMIT1002_04131 and MIT1002_04132 overlap by 37 nucleotidesMIT1002_04132 and MIT1002_04133 are separated by 15 nucleotides MIT1002_04130: MIT1002_04130 - Oxa1Ec, at 4,630,981 to 4,632,639 _04130 MIT1002_04131: MIT1002_04131 - Putative membrane protein insertion efficiency factor, at 4,632,650 to 4,632,919 _04131 MIT1002_04132: MIT1002_04132 - Ribonuclease P protein component, at 4,632,883 to 4,633,242 _04132 MIT1002_04133: MIT1002_04133 - 50S ribosomal protein L34, at 4,633,258 to 4,633,392 _04133 Position (kb) 4632 4633Strain fitness (log2 ratio) -2 -1 0 1 2at 4632.687 kb on + strand, within MIT1002_04131at 4632.786 kb on - strand, within MIT1002_04131at 4632.824 kb on + strand, within MIT1002_04131at 4632.867 kb on + strand, within MIT1002_04131at 4632.867 kb on + strand, within MIT1002_04131at 4632.867 kb on + strand, within MIT1002_04131at 4632.933 kb on - strand, within MIT1002_04132at 4633.594 kb on + strandat 4633.708 kb on + strandat 4633.717 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 6
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4,632,687 + MIT1002_04131 0.14 -0.7
4,632,786 - MIT1002_04131 0.50 -2.1
4,632,824 + MIT1002_04131 0.64 -0.2
4,632,867 + MIT1002_04131 0.80 -2.5
4,632,867 + MIT1002_04131 0.80 -0.7
4,632,867 + MIT1002_04131 0.80 -1.1
4,632,933 - MIT1002_04132 0.14 +1.5
4,633,594 + +1.0
4,633,708 + +2.7
4,633,717 - -0.6

Or see this region's nucleotide sequence