Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_04119 and MIT1002_04120 are separated by 101 nucleotides MIT1002_04120 and MIT1002_04121 are separated by 206 nucleotides MIT1002_04121 and MIT1002_04122 are separated by 45 nucleotides MIT1002_04122 and MIT1002_04123 are separated by 35 nucleotides
MIT1002_04119: MIT1002_04119 - F-ATPase subunit 6, at 4,619,942 to 4,620,775
_04119
MIT1002_04120: MIT1002_04120 - F0F1 ATP synthase subunit I, at 4,620,877 to 4,621,263
_04120
MIT1002_04121: MIT1002_04121 - putative chromosome-partitioning protein ParB, at 4,621,470 to 4,622,348
_04121
MIT1002_04122: MIT1002_04122 - Sporulation initiation inhibitor protein soj, at 4,622,394 to 4,623,188
_04122
MIT1002_04123: MIT1002_04123 - Ribosomal RNA small subunit methyltransferase G, at 4,623,224 to 4,623,859
_04123
Position (kb) 4621
4622
4623 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4620.972 kb on - strand, within MIT1002_04120 at 4621.194 kb on - strand, within MIT1002_04120 at 4621.333 kb on - strand at 4621.335 kb on + strand at 4621.343 kb on - strand at 4621.343 kb on - strand at 4621.415 kb on - strand at 4621.541 kb on - strand at 4621.553 kb on + strand at 4621.553 kb on + strand at 4621.553 kb on + strand at 4621.553 kb on + strand at 4621.561 kb on - strand, within MIT1002_04121 at 4621.633 kb on + strand, within MIT1002_04121 at 4621.638 kb on + strand, within MIT1002_04121 at 4621.641 kb on - strand, within MIT1002_04121 at 4621.641 kb on - strand, within MIT1002_04121 at 4621.681 kb on - strand, within MIT1002_04121 at 4621.728 kb on - strand, within MIT1002_04121 at 4621.730 kb on + strand, within MIT1002_04121 at 4621.730 kb on + strand, within MIT1002_04121 at 4621.739 kb on - strand, within MIT1002_04121 at 4621.769 kb on - strand, within MIT1002_04121 at 4621.769 kb on - strand, within MIT1002_04121 at 4621.840 kb on + strand, within MIT1002_04121 at 4621.900 kb on - strand, within MIT1002_04121 at 4621.939 kb on - strand, within MIT1002_04121 at 4621.973 kb on + strand, within MIT1002_04121 at 4622.120 kb on + strand, within MIT1002_04121 at 4622.120 kb on + strand, within MIT1002_04121 at 4622.120 kb on + strand, within MIT1002_04121 at 4622.120 kb on + strand, within MIT1002_04121 at 4622.128 kb on - strand, within MIT1002_04121 at 4622.128 kb on - strand, within MIT1002_04121 at 4622.128 kb on - strand, within MIT1002_04121 at 4622.128 kb on - strand, within MIT1002_04121 at 4622.128 kb on - strand, within MIT1002_04121 at 4622.188 kb on + strand, within MIT1002_04121 at 4622.211 kb on + strand, within MIT1002_04121 at 4622.211 kb on + strand, within MIT1002_04121 at 4622.273 kb on - strand at 4622.304 kb on - strand at 4622.304 kb on - strand at 4622.309 kb on + strand at 4622.317 kb on - strand at 4622.317 kb on - strand at 4622.317 kb on - strand at 4622.317 kb on - strand at 4622.362 kb on - strand at 4622.362 kb on - strand at 4622.383 kb on - strand at 4622.401 kb on + strand at 4622.416 kb on + strand at 4622.479 kb on + strand, within MIT1002_04122 at 4622.718 kb on + strand, within MIT1002_04122 at 4622.718 kb on + strand, within MIT1002_04122 at 4622.753 kb on - strand, within MIT1002_04122 at 4622.786 kb on - strand, within MIT1002_04122 at 4623.089 kb on + strand, within MIT1002_04122 at 4623.096 kb on - strand, within MIT1002_04122 at 4623.096 kb on - strand, within MIT1002_04122 at 4623.207 kb on - strand at 4623.341 kb on - strand, within MIT1002_04123
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 6 remove 4,620,972 - MIT1002_04120 0.25 +0.2 4,621,194 - MIT1002_04120 0.82 -2.1 4,621,333 - -1.6 4,621,335 + -0.9 4,621,343 - -0.4 4,621,343 - -1.0 4,621,415 - +1.0 4,621,541 - +0.3 4,621,553 + +0.9 4,621,553 + -1.2 4,621,553 + -1.7 4,621,553 + -2.5 4,621,561 - MIT1002_04121 0.10 -1.0 4,621,633 + MIT1002_04121 0.19 +1.1 4,621,638 + MIT1002_04121 0.19 -1.4 4,621,641 - MIT1002_04121 0.19 -1.4 4,621,641 - MIT1002_04121 0.19 -0.6 4,621,681 - MIT1002_04121 0.24 -1.7 4,621,728 - MIT1002_04121 0.29 +0.7 4,621,730 + MIT1002_04121 0.30 -0.3 4,621,730 + MIT1002_04121 0.30 -1.3 4,621,739 - MIT1002_04121 0.31 +0.3 4,621,769 - MIT1002_04121 0.34 +1.5 4,621,769 - MIT1002_04121 0.34 +0.9 4,621,840 + MIT1002_04121 0.42 -0.1 4,621,900 - MIT1002_04121 0.49 -2.6 4,621,939 - MIT1002_04121 0.53 -2.0 4,621,973 + MIT1002_04121 0.57 +1.2 4,622,120 + MIT1002_04121 0.74 +0.3 4,622,120 + MIT1002_04121 0.74 -1.3 4,622,120 + MIT1002_04121 0.74 -1.4 4,622,120 + MIT1002_04121 0.74 +1.2 4,622,128 - MIT1002_04121 0.75 -0.6 4,622,128 - MIT1002_04121 0.75 +0.9 4,622,128 - MIT1002_04121 0.75 -1.4 4,622,128 - MIT1002_04121 0.75 -0.3 4,622,128 - MIT1002_04121 0.75 -2.0 4,622,188 + MIT1002_04121 0.82 -0.1 4,622,211 + MIT1002_04121 0.84 -1.3 4,622,211 + MIT1002_04121 0.84 -0.2 4,622,273 - -1.1 4,622,304 - -2.2 4,622,304 - -0.9 4,622,309 + -1.6 4,622,317 - -0.7 4,622,317 - -1.3 4,622,317 - -1.8 4,622,317 - -0.4 4,622,362 - -2.3 4,622,362 - +1.4 4,622,383 - -1.1 4,622,401 + +0.0 4,622,416 + -0.6 4,622,479 + MIT1002_04122 0.11 +0.9 4,622,718 + MIT1002_04122 0.41 -0.8 4,622,718 + MIT1002_04122 0.41 -2.9 4,622,753 - MIT1002_04122 0.45 -1.0 4,622,786 - MIT1002_04122 0.49 +0.9 4,623,089 + MIT1002_04122 0.87 +0.3 4,623,096 - MIT1002_04122 0.88 -1.9 4,623,096 - MIT1002_04122 0.88 -1.0 4,623,207 - -2.4 4,623,341 - MIT1002_04123 0.18 +0.4
Or see this region's nucleotide sequence