Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_04100

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 6
4,598,478	-		MIT1002_04099	0.51	-0.6
4,598,511	+		MIT1002_04099	0.53	+1.3
4,598,511	+		MIT1002_04099	0.53	-0.4
4,598,511	+		MIT1002_04099	0.53	+0.0
4,598,519	-		MIT1002_04099	0.53	-0.3
4,598,519	-		MIT1002_04099	0.53	+0.7
4,598,528	+		MIT1002_04099	0.54	+1.5
4,598,655	+		MIT1002_04099	0.61	+0.9
4,598,762	-		MIT1002_04099	0.68	+1.3
4,598,845	+		MIT1002_04099	0.73	-0.1
4,598,863	-		MIT1002_04099	0.74	-0.8
4,598,866	-		MIT1002_04099	0.74	-0.3
4,598,870	-		MIT1002_04099	0.74	-1.1
4,599,022	+		MIT1002_04099	0.84	+0.2
4,599,037	+		MIT1002_04099	0.85	-1.6
4,599,038	-		MIT1002_04099	0.85	+0.3
4,599,045	-		MIT1002_04099	0.85	-1.2
4,599,057	+		MIT1002_04099	0.86	-0.1
4,599,085	-		MIT1002_04099	0.87	-0.3
4,599,097	-		MIT1002_04099	0.88	+1.3
4,599,136	-				-1.4
4,599,167	-				+0.2
4,599,231	+				+0.3
4,599,256	+				+1.4
4,599,419	+				-1.0
4,599,432	-				+0.2
4,599,432	-				-1.9
4,599,442	+				-0.5
4,599,442	+				+0.6
4,599,450	-				+0.3
4,599,452	+				+0.0
4,599,503	-				+1.7
4,599,505	+				-0.1
4,599,528	-				-0.0
4,599,539	-				-1.7
4,599,645	+				+0.2
4,599,648	-				-0.3
4,599,653	-				+1.0
4,599,653	-				+0.9
4,599,709	-				-1.0
4,599,709	-				+1.3
4,599,799	+		MIT1002_04100	0.12	-0.5
4,599,827	+		MIT1002_04100	0.12	+0.5
4,599,843	-		MIT1002_04100	0.13	+0.2
4,599,845	-		MIT1002_04100	0.13	+0.8
4,599,889	-		MIT1002_04100	0.15	-0.1
4,599,889	-		MIT1002_04100	0.15	+1.3
4,599,933	+		MIT1002_04100	0.16	-1.5
4,599,933	+		MIT1002_04100	0.16	+1.4
4,599,933	+		MIT1002_04100	0.16	-0.4
4,599,933	+		MIT1002_04100	0.16	+1.4
4,599,941	-		MIT1002_04100	0.16	-0.3
4,599,941	-		MIT1002_04100	0.16	+0.5
4,599,941	-		MIT1002_04100	0.16	-0.4
4,599,941	-		MIT1002_04100	0.16	+1.4
4,599,941	-		MIT1002_04100	0.16	+0.7
4,599,974	+		MIT1002_04100	0.18	+3.0
4,599,984	+		MIT1002_04100	0.18	-0.5
4,599,992	-		MIT1002_04100	0.18	+1.4
4,599,994	+		MIT1002_04100	0.18	+2.1
4,600,019	-		MIT1002_04100	0.19	+0.3
4,600,019	-		MIT1002_04100	0.19	+0.5
4,600,101	-		MIT1002_04100	0.22	+0.6
4,600,128	+		MIT1002_04100	0.23	-1.3
4,600,228	-		MIT1002_04100	0.26	+0.2
4,600,287	+		MIT1002_04100	0.28	+0.7
4,600,346	+		MIT1002_04100	0.30	-0.1
4,600,478	+		MIT1002_04100	0.35	+1.1
4,600,479	-		MIT1002_04100	0.35	-2.1
4,600,512	-		MIT1002_04100	0.36	+1.0
4,600,565	+		MIT1002_04100	0.38	-0.8
4,600,610	+		MIT1002_04100	0.39	-0.8
4,600,617	+		MIT1002_04100	0.39	+1.0
4,600,617	+		MIT1002_04100	0.39	+0.9
4,600,618	-		MIT1002_04100	0.39	-0.7
4,600,618	-		MIT1002_04100	0.39	-0.8
4,600,627	+		MIT1002_04100	0.40	-0.2
4,600,628	+		MIT1002_04100	0.40	+1.6
4,600,628	-		MIT1002_04100	0.40	-0.2
4,600,636	-		MIT1002_04100	0.40	-0.9
4,600,636	-		MIT1002_04100	0.40	-0.3
4,600,743	+		MIT1002_04100	0.44	+1.1
4,600,782	-		MIT1002_04100	0.45	+0.0
4,600,860	-		MIT1002_04100	0.48	+1.0
4,600,862	-		MIT1002_04100	0.48	-2.4
4,600,874	-		MIT1002_04100	0.48	-1.0
4,600,923	+		MIT1002_04100	0.50	+1.2
4,600,940	-		MIT1002_04100	0.50	-1.2
4,600,949	+		MIT1002_04100	0.51	+0.3
4,600,982	+		MIT1002_04100	0.52	-0.9
4,600,990	+		MIT1002_04100	0.52	-0.8
4,600,990	-		MIT1002_04100	0.52	-0.3
4,601,008	-		MIT1002_04100	0.53	-0.7
4,601,071	-		MIT1002_04100	0.55	-2.5
4,601,094	+		MIT1002_04100	0.56	+0.9
4,601,124	+		MIT1002_04100	0.57	+0.3
4,601,135	+		MIT1002_04100	0.57	+0.3
4,601,165	+		MIT1002_04100	0.58	-1.7
4,601,211	+		MIT1002_04100	0.60	-0.3
4,601,214	+		MIT1002_04100	0.60	+1.5
4,601,218	-		MIT1002_04100	0.60	-1.3
4,601,222	-		MIT1002_04100	0.60	-1.5
4,601,269	+		MIT1002_04100	0.62	+0.3
4,601,299	+		MIT1002_04100	0.63	-1.5
4,601,299	+		MIT1002_04100	0.63	+0.0
4,601,299	+		MIT1002_04100	0.63	-2.5
4,601,307	-		MIT1002_04100	0.63	-0.9
4,601,391	-		MIT1002_04100	0.66	-1.5
4,601,486	+		MIT1002_04100	0.69	-0.2
4,601,502	+		MIT1002_04100	0.70	+0.3
4,601,507	+		MIT1002_04100	0.70	-2.4
4,601,508	+		MIT1002_04100	0.70	+0.5
4,601,563	-		MIT1002_04100	0.72	-0.5
4,601,608	+		MIT1002_04100	0.73	-1.2
4,601,611	-		MIT1002_04100	0.73	-0.4
4,601,651	+		MIT1002_04100	0.75	-0.9
4,601,651	+		MIT1002_04100	0.75	-1.7
4,601,651	+		MIT1002_04100	0.75	-2.1
4,601,659	-		MIT1002_04100	0.75	+0.9
4,601,659	-		MIT1002_04100	0.75	-1.4
4,601,667	-		MIT1002_04100	0.75	+0.6
4,601,670	+		MIT1002_04100	0.75	-1.2
4,601,675	+		MIT1002_04100	0.76	+0.9
4,601,697	+		MIT1002_04100	0.76	-1.9
4,601,707	-		MIT1002_04100	0.77	-0.6
4,601,751	-		MIT1002_04100	0.78	+0.2
4,601,776	+		MIT1002_04100	0.79	-0.5
4,601,862	-		MIT1002_04100	0.82	+0.3
4,601,954	+		MIT1002_04100	0.85	-0.7
4,602,000	+		MIT1002_04100	0.87	+0.1
4,602,008	-		MIT1002_04100	0.87	-0.0
4,602,008	-		MIT1002_04100	0.87	-1.1
4,602,018	-		MIT1002_04100	0.87	-0.3
4,602,019	+		MIT1002_04100	0.87	-2.2
4,602,091	+		MIT1002_04100	0.90	+0.1
4,602,096	+		MIT1002_04100	0.90	-1.0
4,602,288	-				-0.9
4,602,294	+				+1.4
4,602,333	+				-1.3
4,602,341	-				+2.3
4,602,401	+				-0.3
4,602,401	+				+1.0
4,602,401	+				+0.5
4,602,404	-				-1.9
4,602,419	-				-0.7
4,602,482	+				+0.3
4,602,482	-				+2.5
4,602,482	-				-1.9
4,602,482	-				+0.3
4,602,484	+				-0.5
4,602,507	+				+0.9
4,602,660	+				-0.7
4,602,660	+				-0.5
4,602,660	+				+2.8
4,602,660	+				+0.3
4,602,668	-				+0.3
4,602,668	-				+1.4
4,603,011	+				-0.0
4,603,055	+		MIT1002_04101	0.10	-2.0
4,603,063	-		MIT1002_04101	0.11	-2.2
4,603,063	-		MIT1002_04101	0.11	+1.3
4,603,064	-		MIT1002_04101	0.11	+1.0
4,603,122	-		MIT1002_04101	0.15	+0.4
4,603,309	+		MIT1002_04101	0.29	-1.0
4,603,316	+		MIT1002_04101	0.30	-1.3
4,603,385	+		MIT1002_04101	0.35	-2.2