Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_04044

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 6
4,538,629	-		MIT1002_04043	0.37	-0.0
4,538,631	+		MIT1002_04043	0.37	-0.4
4,538,736	+		MIT1002_04043	0.44	+0.3
4,538,736	+		MIT1002_04043	0.44	-0.4
4,538,744	-		MIT1002_04043	0.44	-0.3
4,538,777	-		MIT1002_04043	0.47	-0.0
4,538,811	+		MIT1002_04043	0.49	+1.5
4,538,819	-		MIT1002_04043	0.49	+0.5
4,538,878	-		MIT1002_04043	0.53	-1.9
4,538,885	+		MIT1002_04043	0.54	+0.2
4,538,893	+		MIT1002_04043	0.54	-1.2
4,538,916	+		MIT1002_04043	0.56	-0.5
4,538,981	+		MIT1002_04043	0.60	-1.0
4,539,023	+		MIT1002_04043	0.63	+1.3
4,539,066	+		MIT1002_04043	0.66	+0.4
4,539,072	-		MIT1002_04043	0.66	-1.0
4,539,114	-		MIT1002_04043	0.69	+0.3
4,539,174	-		MIT1002_04043	0.73	-0.2
4,539,296	+		MIT1002_04043	0.81	+1.0
4,539,296	+		MIT1002_04043	0.81	+0.9
4,539,335	-		MIT1002_04043	0.83	-0.5
4,539,338	+		MIT1002_04043	0.84	-0.7
4,539,358	+		MIT1002_04043	0.85	+0.3
4,539,366	-		MIT1002_04043	0.86	+0.8
4,539,396	+		MIT1002_04043	0.88	-0.3
4,539,426	-		MIT1002_04043	0.90	-3.4
4,539,497	+				+0.0
4,539,539	-				+1.5
4,539,541	+				+1.0
4,539,640	-				-0.6
4,539,650	-				+0.8
4,539,650	-				-1.0
4,539,650	-				-0.1
4,539,650	-				-2.1
4,539,650	-				-0.3
4,539,688	+				-1.4
4,539,696	-				+0.3
4,539,696	-				-1.6
4,539,696	-				-3.3
4,539,696	-				-5.8
4,539,696	-				-0.1
4,539,740	+		MIT1002_04044	0.14	-2.5
4,539,745	+		MIT1002_04044	0.15	-1.9
4,539,749	+		MIT1002_04044	0.15	-2.3
4,539,801	+		MIT1002_04044	0.21	-4.3
4,539,822	-		MIT1002_04044	0.23	-0.7
4,539,849	+		MIT1002_04044	0.27	-0.3
4,539,875	+		MIT1002_04044	0.29	-1.2
4,539,930	-		MIT1002_04044	0.36	-1.8
4,539,949	+		MIT1002_04044	0.38	-3.8
4,539,987	+		MIT1002_04044	0.42	-0.3
4,539,987	+		MIT1002_04044	0.42	-2.8
4,539,996	-		MIT1002_04044	0.43	-3.9
4,540,043	-		MIT1002_04044	0.49	-2.6
4,540,098	+		MIT1002_04044	0.55	-0.1
4,540,106	-		MIT1002_04044	0.56	+1.2
4,540,107	-		MIT1002_04044	0.56	-2.2
4,540,141	-		MIT1002_04044	0.60	-1.6
4,540,145	+		MIT1002_04044	0.60	-2.0
4,540,145	+		MIT1002_04044	0.60	-2.2
4,540,153	-		MIT1002_04044	0.61	-1.4
4,540,163	-		MIT1002_04044	0.62	-2.1
4,540,177	+		MIT1002_04044	0.64	-2.9
4,540,177	+		MIT1002_04044	0.64	-0.5
4,540,185	-		MIT1002_04044	0.65	-3.1
4,540,250	+		MIT1002_04044	0.72	-1.9
4,540,250	+		MIT1002_04044	0.72	-4.1
4,540,263	+		MIT1002_04044	0.74	-1.5
4,540,308	-		MIT1002_04044	0.79	-2.3
4,540,318	-		MIT1002_04044	0.80	-4.5
4,540,318	-		MIT1002_04044	0.80	-0.5
4,540,340	+		MIT1002_04044	0.82	-0.2
4,540,347	+		MIT1002_04044	0.83	-1.3
4,540,348	-		MIT1002_04044	0.83	-1.1
4,540,348	-		MIT1002_04044	0.83	-1.9
4,540,348	-		MIT1002_04044	0.83	-1.8
4,540,350	+		MIT1002_04044	0.84	-0.4
4,540,350	+		MIT1002_04044	0.84	-0.2
4,540,350	+		MIT1002_04044	0.84	-0.4
4,540,350	+		MIT1002_04044	0.84	-2.6
4,540,350	+		MIT1002_04044	0.84	-1.7
4,540,355	+		MIT1002_04044	0.84	-3.1
4,540,358	-		MIT1002_04044	0.84	-1.8
4,540,358	-		MIT1002_04044	0.84	-0.8
4,540,358	-		MIT1002_04044	0.84	-0.4
4,540,358	-		MIT1002_04044	0.84	-2.4
4,540,358	-		MIT1002_04044	0.84	-0.6
4,540,365	-		MIT1002_04044	0.85	-3.6
4,540,365	-		MIT1002_04044	0.85	-3.7
4,540,383	-		MIT1002_04044	0.87	-7.4
4,540,390	+		MIT1002_04044	0.88	-2.3
4,540,390	+		MIT1002_04044	0.88	-2.0
4,540,398	-		MIT1002_04044	0.89	-1.6
4,540,398	-		MIT1002_04044	0.89	+0.5
4,540,398	-		MIT1002_04044	0.89	-2.3
4,540,398	-		MIT1002_04044	0.89	-2.4
4,540,418	-				-0.7
4,540,443	+				-0.8
4,540,453	-				-1.9
4,540,467	+				-2.6
4,540,467	+				+0.2
4,540,467	+				-2.4
4,540,467	+				-2.5
4,540,467	+				-0.9
4,540,467	+				-1.4
4,540,467	+				-2.0
4,540,467	+				-2.1
4,540,467	+				-1.3
4,540,473	-				-0.3
4,540,475	-				-2.3
4,540,475	-				-2.1
4,540,475	-				-2.6
4,540,475	-				-1.5
4,540,475	-				-2.6
4,540,475	-				+0.0
4,540,475	-				-0.7
4,540,475	-				-3.7
4,540,475	-				-4.0
4,540,475	-				-0.2
4,540,573	+				-1.2
4,540,578	+				-1.8
4,540,588	+				-1.9
4,540,799	-		MIT1002_04045	0.10	-3.2
4,540,799	-		MIT1002_04045	0.10	-4.6
4,540,799	-		MIT1002_04045	0.10	+0.5
4,540,799	-		MIT1002_04045	0.10	-4.2
4,540,854	-		MIT1002_04045	0.14	-0.3
4,540,957	-		MIT1002_04045	0.21	-3.8
4,540,957	-		MIT1002_04045	0.21	-2.9
4,540,957	-		MIT1002_04045	0.21	-1.3
4,540,962	+		MIT1002_04045	0.21	-0.3
4,541,029	+		MIT1002_04045	0.26	-6.7
4,541,032	-		MIT1002_04045	0.26	-0.3
4,541,145	-		MIT1002_04045	0.34	-1.0
4,541,165	-		MIT1002_04045	0.35	-3.4
4,541,213	-		MIT1002_04045	0.38	-3.1
4,541,223	-		MIT1002_04045	0.39	-1.9
4,541,223	-		MIT1002_04045	0.39	-4.9
4,541,223	-		MIT1002_04045	0.39	-2.5
4,541,264	-		MIT1002_04045	0.42	+0.5
4,541,292	-		MIT1002_04045	0.44	-0.5
4,541,395	-		MIT1002_04045	0.51	-2.9
4,541,415	+		MIT1002_04045	0.52	+0.9
4,541,418	-		MIT1002_04045	0.52	+0.5
4,541,423	-		MIT1002_04045	0.53	-3.0
4,541,470	-		MIT1002_04045	0.56	-2.0