Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_04028

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 6
4,514,928	+		MIT1002_04026	0.89	-0.8
4,514,933	-		MIT1002_04026	0.89	+0.0
4,515,004	+				-0.8
4,515,012	-				+0.1
4,515,150	+		MIT1002_04027	0.17	-1.7
4,515,150	+		MIT1002_04027	0.17	+0.9
4,515,159	-		MIT1002_04027	0.18	-3.2
4,515,186	+		MIT1002_04027	0.20	-2.2
4,515,194	-		MIT1002_04027	0.21	+0.1
4,515,194	-		MIT1002_04027	0.21	-1.3
4,515,194	-		MIT1002_04027	0.21	-2.6
4,515,194	-		MIT1002_04027	0.21	-0.2
4,515,227	+		MIT1002_04027	0.25	-0.5
4,515,232	-		MIT1002_04027	0.25	+0.2
4,515,240	-		MIT1002_04027	0.26	+0.9
4,515,255	+		MIT1002_04027	0.28	+1.5
4,515,255	+		MIT1002_04027	0.28	-2.2
4,515,269	-		MIT1002_04027	0.30	+3.0
4,515,271	-		MIT1002_04027	0.30	+0.9
4,515,356	+		MIT1002_04027	0.39	-1.4
4,515,378	+		MIT1002_04027	0.41	-0.4
4,515,378	+		MIT1002_04027	0.41	+0.4
4,515,386	-		MIT1002_04027	0.42	-0.7
4,515,415	+		MIT1002_04027	0.45	+0.0
4,515,423	-		MIT1002_04027	0.46	+0.7
4,515,432	-		MIT1002_04027	0.47	-0.5
4,515,460	+		MIT1002_04027	0.50	-2.7
4,515,504	-		MIT1002_04027	0.55	-1.1
4,515,518	-		MIT1002_04027	0.57	-0.5
4,515,534	-		MIT1002_04027	0.58	-3.3
4,515,584	+		MIT1002_04027	0.64	-1.4
4,515,592	-		MIT1002_04027	0.65	+1.5
4,515,621	-		MIT1002_04027	0.68	-1.6
4,515,668	-		MIT1002_04027	0.73	-0.7
4,515,726	-		MIT1002_04027	0.79	-2.2
4,515,740	+		MIT1002_04027	0.81	-2.6
4,515,745	+		MIT1002_04027	0.81	-2.4
4,515,753	-		MIT1002_04027	0.82	-1.9
4,515,753	-		MIT1002_04027	0.82	-1.5
4,515,824	+				-1.7
4,515,832	-				+1.5
4,515,867	-				-0.6
4,515,869	-				-0.5
4,515,869	-				-0.7
4,515,871	+				-0.6
4,515,892	-				-0.8
4,515,899	-				+0.1
4,515,899	-				-0.2
4,515,923	+				-0.9
4,515,960	-				-1.2
4,515,962	+				-1.0
4,515,962	+				-0.3
4,515,974	+				+0.1
4,515,974	+				-1.8
4,515,979	-				-1.1
4,516,021	-				-1.4
4,516,132	-		MIT1002_04028	0.18	-0.0
4,516,198	-		MIT1002_04028	0.24	-2.0
4,516,284	+		MIT1002_04028	0.31	-2.5
4,516,290	-		MIT1002_04028	0.31	-1.4
4,516,292	-		MIT1002_04028	0.32	-0.6
4,516,292	-		MIT1002_04028	0.32	-2.0
4,516,331	+		MIT1002_04028	0.35	-1.1
4,516,331	+		MIT1002_04028	0.35	-1.7
4,516,331	+		MIT1002_04028	0.35	-1.1
4,516,339	-		MIT1002_04028	0.35	-1.0
4,516,339	-		MIT1002_04028	0.35	+0.5
4,516,362	+		MIT1002_04028	0.37	-0.3
4,516,417	-		MIT1002_04028	0.42	-1.9
4,516,472	+		MIT1002_04028	0.46	+0.5
4,516,480	-		MIT1002_04028	0.47	-0.7
4,516,539	-		MIT1002_04028	0.52	-2.2
4,516,555	+		MIT1002_04028	0.53	-2.0
4,516,588	-		MIT1002_04028	0.56	-0.3
4,516,610	+		MIT1002_04028	0.58	-0.2
4,516,772	+		MIT1002_04028	0.71	-1.1
4,516,780	-		MIT1002_04028	0.72	-0.6
4,516,876	-		MIT1002_04028	0.79	-1.1
4,516,882	+		MIT1002_04028	0.80	+1.6
4,516,890	-		MIT1002_04028	0.81	-1.1
4,516,890	-		MIT1002_04028	0.81	-1.5
4,516,962	+		MIT1002_04028	0.87	-0.1
4,516,962	+		MIT1002_04028	0.87	-1.0
4,516,970	-		MIT1002_04028	0.87	-0.1
4,516,970	-		MIT1002_04028	0.87	-0.4
4,517,008	-				+1.2
4,517,015	+				-0.7
4,517,031	+				-2.7
4,517,044	-				-0.9
4,517,051	+				-2.3
4,517,074	+				+1.5
4,517,194	-		MIT1002_04029	0.12	-0.2
4,517,230	-		MIT1002_04029	0.18	+0.0
4,517,273	-		MIT1002_04029	0.26	-0.6
4,517,283	-		MIT1002_04029	0.28	+0.7
4,517,307	-		MIT1002_04029	0.33	-2.9
4,517,366	-		MIT1002_04029	0.44	-2.2
4,517,387	-		MIT1002_04029	0.47	-0.2
4,517,389	+		MIT1002_04029	0.48	-0.7
4,517,397	-		MIT1002_04029	0.49	-0.1
4,517,467	-		MIT1002_04029	0.62	-0.8
4,517,550	-		MIT1002_04029	0.78	-0.5
4,517,573	+		MIT1002_04029	0.82	-0.9
4,517,668	-				-2.1
4,517,735	+		MIT1002_04030	0.10	+0.9
4,517,735	+		MIT1002_04030	0.10	-0.4
4,517,743	+		MIT1002_04030	0.11	-3.2
4,517,771	+		MIT1002_04030	0.15	-2.5
4,517,780	+		MIT1002_04030	0.17	+0.3
4,517,780	+		MIT1002_04030	0.17	-2.6
4,517,788	-		MIT1002_04030	0.18	-1.5
4,517,788	-		MIT1002_04030	0.18	+0.9
4,517,851	+		MIT1002_04030	0.27	-1.3
4,517,891	-		MIT1002_04030	0.32	-2.1
4,517,891	-		MIT1002_04030	0.32	-1.7
4,517,953	+		MIT1002_04030	0.41	-4.0
4,517,960	-		MIT1002_04030	0.42	-2.7
4,518,022	-		MIT1002_04030	0.51	-2.1
4,518,042	+		MIT1002_04030	0.54	+0.1
4,518,088	+		MIT1002_04030	0.60	-0.8