Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_04024 and MIT1002_04025 are separated by 79 nucleotides MIT1002_04025 and MIT1002_04026 are separated by 1 nucleotides MIT1002_04026 and MIT1002_04027 overlap by 4 nucleotides MIT1002_04027 and MIT1002_04028 overlap by 8 nucleotides
MIT1002_04024: MIT1002_04024 - Poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase precursor, at 4,512,462 to 4,513,688
_04024
MIT1002_04025: MIT1002_04025 - TDP-fucosamine acetyltransferase, at 4,513,768 to 4,514,355
_04025
MIT1002_04026: MIT1002_04026 - BsSco, at 4,514,357 to 4,515,001
_04026
MIT1002_04027: MIT1002_04027 - Protoheme IX farnesyltransferase, at 4,514,998 to 4,515,915
_04027
MIT1002_04028: MIT1002_04028 - Cytochrome oxidase assembly protein, at 4,515,908 to 4,517,125
_04028
Position (kb) 4514
4515
4516 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4513.370 kb on + strand, within MIT1002_04024 at 4513.370 kb on + strand, within MIT1002_04024 at 4513.390 kb on - strand, within MIT1002_04024 at 4513.481 kb on + strand, within MIT1002_04024 at 4513.595 kb on - strand at 4513.597 kb on + strand at 4513.639 kb on + strand at 4513.640 kb on + strand at 4513.678 kb on + strand at 4513.683 kb on + strand at 4513.683 kb on + strand at 4513.683 kb on + strand at 4513.691 kb on - strand at 4513.691 kb on - strand at 4513.691 kb on - strand at 4513.691 kb on - strand at 4513.691 kb on - strand at 4513.691 kb on - strand at 4513.691 kb on - strand at 4513.823 kb on + strand at 4513.927 kb on - strand, within MIT1002_04025 at 4513.929 kb on + strand, within MIT1002_04025 at 4514.038 kb on + strand, within MIT1002_04025 at 4514.048 kb on + strand, within MIT1002_04025 at 4514.048 kb on + strand, within MIT1002_04025 at 4514.048 kb on + strand, within MIT1002_04025 at 4514.048 kb on + strand, within MIT1002_04025 at 4514.048 kb on + strand, within MIT1002_04025 at 4514.048 kb on + strand, within MIT1002_04025 at 4514.048 kb on + strand, within MIT1002_04025 at 4514.056 kb on - strand, within MIT1002_04025 at 4514.056 kb on - strand, within MIT1002_04025 at 4514.056 kb on - strand, within MIT1002_04025 at 4514.056 kb on - strand, within MIT1002_04025 at 4514.056 kb on - strand, within MIT1002_04025 at 4514.071 kb on - strand, within MIT1002_04025 at 4514.086 kb on + strand, within MIT1002_04025 at 4514.093 kb on - strand, within MIT1002_04025 at 4514.101 kb on + strand, within MIT1002_04025 at 4514.101 kb on + strand, within MIT1002_04025 at 4514.130 kb on - strand, within MIT1002_04025 at 4514.141 kb on + strand, within MIT1002_04025 at 4514.151 kb on - strand, within MIT1002_04025 at 4514.291 kb on - strand, within MIT1002_04025 at 4514.316 kb on - strand at 4514.368 kb on + strand at 4514.420 kb on + strand at 4514.420 kb on - strand at 4514.472 kb on - strand, within MIT1002_04026 at 4514.493 kb on - strand, within MIT1002_04026 at 4514.595 kb on - strand, within MIT1002_04026 at 4514.611 kb on + strand, within MIT1002_04026 at 4514.630 kb on + strand, within MIT1002_04026 at 4514.730 kb on - strand, within MIT1002_04026 at 4514.730 kb on - strand, within MIT1002_04026 at 4514.730 kb on - strand, within MIT1002_04026 at 4514.730 kb on - strand, within MIT1002_04026 at 4514.730 kb on - strand, within MIT1002_04026 at 4514.732 kb on + strand, within MIT1002_04026 at 4514.732 kb on - strand, within MIT1002_04026 at 4514.836 kb on - strand, within MIT1002_04026 at 4514.880 kb on + strand, within MIT1002_04026 at 4514.883 kb on - strand, within MIT1002_04026 at 4514.886 kb on + strand, within MIT1002_04026 at 4514.928 kb on + strand, within MIT1002_04026 at 4514.933 kb on - strand, within MIT1002_04026 at 4515.004 kb on + strand at 4515.012 kb on - strand at 4515.150 kb on + strand, within MIT1002_04027 at 4515.150 kb on + strand, within MIT1002_04027 at 4515.159 kb on - strand, within MIT1002_04027 at 4515.186 kb on + strand, within MIT1002_04027 at 4515.194 kb on - strand, within MIT1002_04027 at 4515.194 kb on - strand, within MIT1002_04027 at 4515.194 kb on - strand, within MIT1002_04027 at 4515.194 kb on - strand, within MIT1002_04027 at 4515.227 kb on + strand, within MIT1002_04027 at 4515.232 kb on - strand, within MIT1002_04027 at 4515.240 kb on - strand, within MIT1002_04027 at 4515.255 kb on + strand, within MIT1002_04027 at 4515.255 kb on + strand, within MIT1002_04027 at 4515.269 kb on - strand, within MIT1002_04027 at 4515.271 kb on - strand, within MIT1002_04027 at 4515.356 kb on + strand, within MIT1002_04027 at 4515.378 kb on + strand, within MIT1002_04027 at 4515.378 kb on + strand, within MIT1002_04027 at 4515.386 kb on - strand, within MIT1002_04027 at 4515.415 kb on + strand, within MIT1002_04027 at 4515.423 kb on - strand, within MIT1002_04027 at 4515.432 kb on - strand, within MIT1002_04027 at 4515.460 kb on + strand, within MIT1002_04027 at 4515.504 kb on - strand, within MIT1002_04027 at 4515.518 kb on - strand, within MIT1002_04027 at 4515.534 kb on - strand, within MIT1002_04027 at 4515.584 kb on + strand, within MIT1002_04027 at 4515.592 kb on - strand, within MIT1002_04027 at 4515.621 kb on - strand, within MIT1002_04027 at 4515.668 kb on - strand, within MIT1002_04027 at 4515.726 kb on - strand, within MIT1002_04027 at 4515.740 kb on + strand, within MIT1002_04027 at 4515.745 kb on + strand, within MIT1002_04027 at 4515.753 kb on - strand, within MIT1002_04027 at 4515.753 kb on - strand, within MIT1002_04027 at 4515.824 kb on + strand at 4515.832 kb on - strand at 4515.867 kb on - strand at 4515.869 kb on - strand at 4515.869 kb on - strand at 4515.871 kb on + strand at 4515.892 kb on - strand at 4515.899 kb on - strand at 4515.899 kb on - strand at 4515.923 kb on + strand at 4515.960 kb on - strand at 4515.962 kb on + strand at 4515.962 kb on + strand at 4515.974 kb on + strand at 4515.974 kb on + strand at 4515.979 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 6 remove 4,513,370 + MIT1002_04024 0.74 +0.0 4,513,370 + MIT1002_04024 0.74 -0.2 4,513,390 - MIT1002_04024 0.76 -1.0 4,513,481 + MIT1002_04024 0.83 -1.5 4,513,595 - +0.9 4,513,597 + -1.5 4,513,639 + -1.0 4,513,640 + -0.8 4,513,678 + -1.7 4,513,683 + -0.5 4,513,683 + +1.6 4,513,683 + +0.2 4,513,691 - +0.2 4,513,691 - -0.7 4,513,691 - -0.6 4,513,691 - -0.2 4,513,691 - +1.4 4,513,691 - +0.7 4,513,691 - -1.3 4,513,823 + -0.7 4,513,927 - MIT1002_04025 0.27 -1.0 4,513,929 + MIT1002_04025 0.27 -0.1 4,514,038 + MIT1002_04025 0.46 -0.3 4,514,048 + MIT1002_04025 0.48 -1.0 4,514,048 + MIT1002_04025 0.48 +2.0 4,514,048 + MIT1002_04025 0.48 +0.7 4,514,048 + MIT1002_04025 0.48 -1.2 4,514,048 + MIT1002_04025 0.48 -0.1 4,514,048 + MIT1002_04025 0.48 +0.2 4,514,048 + MIT1002_04025 0.48 +1.9 4,514,056 - MIT1002_04025 0.49 +0.8 4,514,056 - MIT1002_04025 0.49 -2.3 4,514,056 - MIT1002_04025 0.49 -1.1 4,514,056 - MIT1002_04025 0.49 +1.9 4,514,056 - MIT1002_04025 0.49 +0.3 4,514,071 - MIT1002_04025 0.52 -0.4 4,514,086 + MIT1002_04025 0.54 -0.5 4,514,093 - MIT1002_04025 0.55 -1.5 4,514,101 + MIT1002_04025 0.57 +0.0 4,514,101 + MIT1002_04025 0.57 +0.3 4,514,130 - MIT1002_04025 0.62 -0.7 4,514,141 + MIT1002_04025 0.63 -0.8 4,514,151 - MIT1002_04025 0.65 +2.0 4,514,291 - MIT1002_04025 0.89 -0.4 4,514,316 - -1.4 4,514,368 + -0.3 4,514,420 + -1.0 4,514,420 - -1.7 4,514,472 - MIT1002_04026 0.18 -1.1 4,514,493 - MIT1002_04026 0.21 -1.6 4,514,595 - MIT1002_04026 0.37 -1.9 4,514,611 + MIT1002_04026 0.39 -1.5 4,514,630 + MIT1002_04026 0.42 -2.2 4,514,730 - MIT1002_04026 0.58 -0.2 4,514,730 - MIT1002_04026 0.58 -0.9 4,514,730 - MIT1002_04026 0.58 -2.2 4,514,730 - MIT1002_04026 0.58 -1.6 4,514,730 - MIT1002_04026 0.58 -1.5 4,514,732 + MIT1002_04026 0.58 -2.8 4,514,732 - MIT1002_04026 0.58 +0.3 4,514,836 - MIT1002_04026 0.74 +0.9 4,514,880 + MIT1002_04026 0.81 -2.6 4,514,883 - MIT1002_04026 0.82 -1.0 4,514,886 + MIT1002_04026 0.82 -1.6 4,514,928 + MIT1002_04026 0.89 -0.8 4,514,933 - MIT1002_04026 0.89 +0.0 4,515,004 + -0.8 4,515,012 - +0.1 4,515,150 + MIT1002_04027 0.17 -1.7 4,515,150 + MIT1002_04027 0.17 +0.9 4,515,159 - MIT1002_04027 0.18 -3.2 4,515,186 + MIT1002_04027 0.20 -2.2 4,515,194 - MIT1002_04027 0.21 +0.1 4,515,194 - MIT1002_04027 0.21 -1.3 4,515,194 - MIT1002_04027 0.21 -2.6 4,515,194 - MIT1002_04027 0.21 -0.2 4,515,227 + MIT1002_04027 0.25 -0.5 4,515,232 - MIT1002_04027 0.25 +0.2 4,515,240 - MIT1002_04027 0.26 +0.9 4,515,255 + MIT1002_04027 0.28 +1.5 4,515,255 + MIT1002_04027 0.28 -2.2 4,515,269 - MIT1002_04027 0.30 +3.0 4,515,271 - MIT1002_04027 0.30 +0.9 4,515,356 + MIT1002_04027 0.39 -1.4 4,515,378 + MIT1002_04027 0.41 -0.4 4,515,378 + MIT1002_04027 0.41 +0.4 4,515,386 - MIT1002_04027 0.42 -0.7 4,515,415 + MIT1002_04027 0.45 +0.0 4,515,423 - MIT1002_04027 0.46 +0.7 4,515,432 - MIT1002_04027 0.47 -0.5 4,515,460 + MIT1002_04027 0.50 -2.7 4,515,504 - MIT1002_04027 0.55 -1.1 4,515,518 - MIT1002_04027 0.57 -0.5 4,515,534 - MIT1002_04027 0.58 -3.3 4,515,584 + MIT1002_04027 0.64 -1.4 4,515,592 - MIT1002_04027 0.65 +1.5 4,515,621 - MIT1002_04027 0.68 -1.6 4,515,668 - MIT1002_04027 0.73 -0.7 4,515,726 - MIT1002_04027 0.79 -2.2 4,515,740 + MIT1002_04027 0.81 -2.6 4,515,745 + MIT1002_04027 0.81 -2.4 4,515,753 - MIT1002_04027 0.82 -1.9 4,515,753 - MIT1002_04027 0.82 -1.5 4,515,824 + -1.7 4,515,832 - +1.5 4,515,867 - -0.6 4,515,869 - -0.5 4,515,869 - -0.7 4,515,871 + -0.6 4,515,892 - -0.8 4,515,899 - +0.1 4,515,899 - -0.2 4,515,923 + -0.9 4,515,960 - -1.2 4,515,962 + -1.0 4,515,962 + -0.3 4,515,974 + +0.1 4,515,974 + -1.8 4,515,979 - -1.1
Or see this region's nucleotide sequence