Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_04013

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 6
4,498,857	+		MIT1002_04012	0.77	+1.2
4,498,864	-		MIT1002_04012	0.77	-1.3
4,498,889	+		MIT1002_04012	0.78	-0.4
4,499,012	+		MIT1002_04012	0.83	+0.0
4,499,066	-		MIT1002_04012	0.86	-0.0
4,499,093	-		MIT1002_04012	0.87	-0.2
4,499,109	+		MIT1002_04012	0.87	-1.3
4,499,136	-		MIT1002_04012	0.89	-1.0
4,499,185	+				-0.8
4,499,222	+				-0.5
4,499,242	+				+0.9
4,499,269	+				-1.0
4,499,278	+				+0.8
4,499,282	+				-1.0
4,499,323	-				+0.3
4,499,345	+				-1.2
4,499,345	+				-2.0
4,499,345	+				-0.2
4,499,353	-				+0.4
4,499,365	-				+0.6
4,499,455	+				-0.9
4,499,457	-				-0.8
4,499,457	-				+1.3
4,499,489	-				+0.6
4,499,605	+				+0.7
4,499,614	-				+0.0
4,499,668	+				-0.7
4,499,754	+				+0.3
4,499,772	-				+0.0
4,499,779	-				-0.2
4,499,824	+				+0.8
4,499,832	-				+0.9
4,500,058	+		MIT1002_04013	0.12	+1.8
4,500,082	-		MIT1002_04013	0.14	+0.1
4,500,119	-		MIT1002_04013	0.16	+0.1
4,500,120	+		MIT1002_04013	0.16	+1.1
4,500,135	-		MIT1002_04013	0.17	+0.2
4,500,158	+		MIT1002_04013	0.18	-1.5
4,500,161	-		MIT1002_04013	0.18	+1.5
4,500,166	-		MIT1002_04013	0.18	-0.7
4,500,275	-		MIT1002_04013	0.24	+1.0
4,500,277	-		MIT1002_04013	0.25	+0.2
4,500,282	-		MIT1002_04013	0.25	+3.8
4,500,309	+		MIT1002_04013	0.26	+1.2
4,500,366	-		MIT1002_04013	0.30	+0.2
4,500,389	-		MIT1002_04013	0.31	-1.9
4,500,396	-		MIT1002_04013	0.31	+1.2
4,500,402	+		MIT1002_04013	0.32	-0.6
4,500,402	-		MIT1002_04013	0.32	+2.4
4,500,410	-		MIT1002_04013	0.32	-0.1
4,500,464	+		MIT1002_04013	0.35	+0.8
4,500,581	+		MIT1002_04013	0.42	-0.8
4,500,595	-		MIT1002_04013	0.42	-0.4
4,500,604	+		MIT1002_04013	0.43	+0.3
4,500,604	+		MIT1002_04013	0.43	-0.4
4,500,604	+		MIT1002_04013	0.43	+0.5
4,500,612	-		MIT1002_04013	0.43	+0.2
4,500,612	-		MIT1002_04013	0.43	-0.3
4,500,614	+		MIT1002_04013	0.43	-1.4
4,500,614	+		MIT1002_04013	0.43	+0.5
4,500,649	-		MIT1002_04013	0.45	+0.3
4,500,764	-		MIT1002_04013	0.52	-1.8
4,500,766	+		MIT1002_04013	0.52	-0.3
4,500,784	-		MIT1002_04013	0.53	+0.5
4,500,789	+		MIT1002_04013	0.53	+1.2
4,501,006	+		MIT1002_04013	0.65	-0.7
4,501,011	+		MIT1002_04013	0.66	+1.1
4,501,047	+		MIT1002_04013	0.68	-0.8
4,501,047	+		MIT1002_04013	0.68	+1.2
4,501,047	+		MIT1002_04013	0.68	-0.5
4,501,047	+		MIT1002_04013	0.68	+0.9
4,501,047	+		MIT1002_04013	0.68	-1.5
4,501,055	-		MIT1002_04013	0.68	+0.8
4,501,055	-		MIT1002_04013	0.68	-1.5
4,501,055	-		MIT1002_04013	0.68	+2.1
4,501,055	-		MIT1002_04013	0.68	+1.5
4,501,055	-		MIT1002_04013	0.68	-1.7
4,501,167	+		MIT1002_04013	0.75	-0.3
4,501,177	+		MIT1002_04013	0.75	+0.3
4,501,185	-		MIT1002_04013	0.76	+0.3
4,501,185	-		MIT1002_04013	0.76	-0.5
4,501,185	-		MIT1002_04013	0.76	-0.2
4,501,187	+		MIT1002_04013	0.76	-1.4
4,501,187	+		MIT1002_04013	0.76	+0.7
4,501,187	+		MIT1002_04013	0.76	-1.3
4,501,195	-		MIT1002_04013	0.76	-0.4
4,501,219	-		MIT1002_04013	0.77	-0.1
4,501,219	-		MIT1002_04013	0.77	-0.5
4,501,481	+				+0.2
4,501,499	-				-0.6
4,501,511	+				-1.7
4,501,514	-				+2.9
4,501,529	-				-1.0
4,501,529	-				+1.0
4,501,605	+				-0.7
4,501,608	-				-1.4
4,501,689	-				+1.2
4,501,692	+				+1.8
4,501,699	-				+3.0
4,501,767	-				+1.7
4,501,781	-				+1.8
4,501,827	+				+1.5
4,501,827	+				-0.3
4,501,835	-		MIT1002_04014	0.10	+2.3
4,501,857	-		MIT1002_04014	0.13	-0.3
4,501,933	+		MIT1002_04014	0.21	-1.1
4,501,943	+		MIT1002_04014	0.22	-0.5
4,501,943	+		MIT1002_04014	0.22	+0.5
4,501,974	+		MIT1002_04014	0.25	-0.2
4,501,977	-		MIT1002_04014	0.26	-1.3
4,502,014	-		MIT1002_04014	0.30	+0.1
4,502,166	+		MIT1002_04014	0.46	-0.7
4,502,187	+		MIT1002_04014	0.49	-0.1
4,502,195	-		MIT1002_04014	0.49	-0.6
4,502,211	+		MIT1002_04014	0.51	-2.4
4,502,229	-		MIT1002_04014	0.53	+0.1
4,502,348	-		MIT1002_04014	0.66	+0.3
4,502,481	+		MIT1002_04014	0.81	-1.1
4,502,520	-		MIT1002_04014	0.85	+0.0
4,502,564	+		MIT1002_04014	0.90	+0.4
4,502,572	-				+0.3
4,502,600	+				-1.5
4,502,600	+				+1.1
4,502,600	+				-3.0
4,502,608	-				+2.2