Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_03960 and MIT1002_03961 are separated by 27 nucleotides MIT1002_03961 and MIT1002_03962 are separated by 466 nucleotides
MIT1002_03960: MIT1002_03960 - putative methyltransferase, at 4,444,148 to 4,444,963
_03960
MIT1002_03961: MIT1002_03961 - Phosphoribosylamine--glycine ligase, at 4,444,991 to 4,446,283
_03961
MIT1002_03962: MIT1002_03962 - Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase, at 4,446,750 to 4,447,502
_03962
Position (kb) 4444
4445
4446
4447 Strain fitness (log2 ratio) -8
-7
-6
-5
-4
-3
-2
-1
0
1
2
3 at 4444.043 kb on - strand at 4444.056 kb on + strand at 4444.063 kb on + strand at 4444.078 kb on - strand at 4444.083 kb on - strand at 4444.104 kb on + strand at 4444.112 kb on - strand at 4444.112 kb on - strand at 4444.184 kb on - strand at 4444.199 kb on + strand at 4444.199 kb on + strand at 4444.199 kb on + strand at 4444.207 kb on - strand at 4444.207 kb on - strand at 4444.207 kb on - strand at 4444.255 kb on - strand, within MIT1002_03960 at 4444.274 kb on - strand, within MIT1002_03960 at 4444.276 kb on + strand, within MIT1002_03960 at 4444.279 kb on + strand, within MIT1002_03960 at 4444.279 kb on + strand, within MIT1002_03960 at 4444.279 kb on + strand, within MIT1002_03960 at 4444.279 kb on + strand, within MIT1002_03960 at 4444.287 kb on - strand, within MIT1002_03960 at 4444.287 kb on - strand, within MIT1002_03960 at 4444.324 kb on - strand, within MIT1002_03960 at 4444.372 kb on + strand, within MIT1002_03960 at 4444.373 kb on - strand, within MIT1002_03960 at 4444.380 kb on - strand, within MIT1002_03960 at 4444.402 kb on + strand, within MIT1002_03960 at 4444.402 kb on + strand, within MIT1002_03960 at 4444.402 kb on + strand, within MIT1002_03960 at 4444.410 kb on - strand, within MIT1002_03960 at 4444.417 kb on + strand, within MIT1002_03960 at 4444.425 kb on - strand, within MIT1002_03960 at 4444.425 kb on - strand, within MIT1002_03960 at 4444.506 kb on + strand, within MIT1002_03960 at 4444.506 kb on - strand, within MIT1002_03960 at 4444.514 kb on - strand, within MIT1002_03960 at 4444.514 kb on - strand, within MIT1002_03960 at 4444.520 kb on + strand, within MIT1002_03960 at 4444.528 kb on - strand, within MIT1002_03960 at 4444.625 kb on + strand, within MIT1002_03960 at 4444.681 kb on - strand, within MIT1002_03960 at 4444.841 kb on - strand, within MIT1002_03960 at 4444.843 kb on + strand, within MIT1002_03960 at 4444.843 kb on + strand, within MIT1002_03960 at 4444.843 kb on + strand, within MIT1002_03960 at 4444.843 kb on + strand, within MIT1002_03960 at 4444.843 kb on + strand, within MIT1002_03960 at 4444.851 kb on - strand, within MIT1002_03960 at 4444.851 kb on - strand, within MIT1002_03960 at 4444.851 kb on - strand, within MIT1002_03960 at 4444.851 kb on - strand, within MIT1002_03960 at 4444.851 kb on - strand, within MIT1002_03960 at 4444.851 kb on - strand, within MIT1002_03960 at 4444.851 kb on - strand, within MIT1002_03960 at 4444.851 kb on - strand, within MIT1002_03960 at 4444.872 kb on - strand, within MIT1002_03960 at 4444.985 kb on - strand at 4445.038 kb on + strand at 4445.038 kb on + strand at 4445.038 kb on + strand at 4445.046 kb on - strand at 4445.056 kb on - strand at 4445.063 kb on - strand at 4445.084 kb on - strand at 4445.100 kb on + strand at 4445.100 kb on - strand at 4445.158 kb on + strand, within MIT1002_03961 at 4445.173 kb on + strand, within MIT1002_03961 at 4445.173 kb on + strand, within MIT1002_03961 at 4445.173 kb on + strand, within MIT1002_03961 at 4445.181 kb on - strand, within MIT1002_03961 at 4445.181 kb on - strand, within MIT1002_03961 at 4445.260 kb on - strand, within MIT1002_03961 at 4445.281 kb on - strand, within MIT1002_03961 at 4445.307 kb on - strand, within MIT1002_03961 at 4445.338 kb on - strand, within MIT1002_03961 at 4445.389 kb on - strand, within MIT1002_03961 at 4445.469 kb on + strand, within MIT1002_03961 at 4445.469 kb on + strand, within MIT1002_03961 at 4445.554 kb on + strand, within MIT1002_03961 at 4445.565 kb on + strand, within MIT1002_03961 at 4445.565 kb on + strand, within MIT1002_03961 at 4445.630 kb on + strand, within MIT1002_03961 at 4445.630 kb on + strand, within MIT1002_03961 at 4445.630 kb on + strand, within MIT1002_03961 at 4445.632 kb on + strand, within MIT1002_03961 at 4445.638 kb on - strand, within MIT1002_03961 at 4445.680 kb on - strand, within MIT1002_03961 at 4445.723 kb on - strand, within MIT1002_03961 at 4445.748 kb on + strand, within MIT1002_03961 at 4445.769 kb on - strand, within MIT1002_03961 at 4445.832 kb on + strand, within MIT1002_03961 at 4445.838 kb on + strand, within MIT1002_03961 at 4445.854 kb on - strand, within MIT1002_03961 at 4445.888 kb on + strand, within MIT1002_03961 at 4445.928 kb on - strand, within MIT1002_03961 at 4445.930 kb on - strand, within MIT1002_03961 at 4445.940 kb on - strand, within MIT1002_03961 at 4445.964 kb on + strand, within MIT1002_03961 at 4445.964 kb on + strand, within MIT1002_03961 at 4445.983 kb on + strand, within MIT1002_03961 at 4445.988 kb on + strand, within MIT1002_03961 at 4445.988 kb on + strand, within MIT1002_03961 at 4445.988 kb on + strand, within MIT1002_03961 at 4445.988 kb on + strand, within MIT1002_03961 at 4445.988 kb on + strand, within MIT1002_03961 at 4445.988 kb on + strand, within MIT1002_03961 at 4445.996 kb on - strand, within MIT1002_03961 at 4445.996 kb on - strand, within MIT1002_03961 at 4445.996 kb on - strand, within MIT1002_03961 at 4445.996 kb on - strand, within MIT1002_03961 at 4445.996 kb on - strand, within MIT1002_03961 at 4446.015 kb on - strand, within MIT1002_03961 at 4446.073 kb on - strand, within MIT1002_03961 at 4446.099 kb on - strand, within MIT1002_03961 at 4446.101 kb on + strand, within MIT1002_03961 at 4446.121 kb on + strand, within MIT1002_03961 at 4446.123 kb on + strand, within MIT1002_03961 at 4446.131 kb on - strand, within MIT1002_03961 at 4446.160 kb on - strand at 4446.189 kb on + strand at 4446.199 kb on + strand at 4446.199 kb on + strand at 4446.207 kb on - strand at 4446.214 kb on + strand at 4446.214 kb on + strand at 4446.222 kb on - strand at 4446.234 kb on - strand at 4446.277 kb on - strand at 4446.283 kb on + strand at 4446.318 kb on + strand at 4446.318 kb on + strand at 4446.326 kb on - strand at 4446.326 kb on - strand at 4446.326 kb on - strand at 4446.326 kb on - strand at 4446.326 kb on - strand at 4446.326 kb on - strand at 4446.326 kb on - strand at 4446.378 kb on + strand at 4446.378 kb on + strand at 4446.378 kb on + strand at 4446.378 kb on + strand at 4446.378 kb on + strand at 4446.378 kb on + strand at 4446.378 kb on + strand at 4446.378 kb on + strand at 4446.378 kb on + strand at 4446.386 kb on - strand at 4446.386 kb on - strand at 4446.386 kb on - strand at 4446.386 kb on - strand at 4446.386 kb on - strand at 4446.386 kb on - strand at 4446.386 kb on - strand at 4446.386 kb on - strand at 4446.386 kb on - strand at 4446.386 kb on - strand at 4446.461 kb on + strand at 4446.469 kb on - strand at 4446.471 kb on - strand at 4446.484 kb on - strand at 4446.515 kb on - strand at 4446.579 kb on + strand at 4446.587 kb on - strand at 4446.604 kb on + strand at 4446.612 kb on - strand at 4446.613 kb on - strand at 4446.694 kb on + strand at 4446.739 kb on + strand at 4446.739 kb on + strand at 4446.764 kb on + strand at 4446.764 kb on + strand at 4446.764 kb on + strand at 4446.765 kb on - strand at 4446.794 kb on + strand at 4446.807 kb on - strand at 4446.837 kb on + strand, within MIT1002_03962 at 4446.872 kb on - strand, within MIT1002_03962 at 4446.873 kb on - strand, within MIT1002_03962 at 4446.927 kb on + strand, within MIT1002_03962 at 4446.985 kb on + strand, within MIT1002_03962 at 4446.985 kb on + strand, within MIT1002_03962 at 4446.985 kb on + strand, within MIT1002_03962 at 4447.003 kb on - strand, within MIT1002_03962 at 4447.003 kb on - strand, within MIT1002_03962 at 4447.038 kb on + strand, within MIT1002_03962 at 4447.119 kb on + strand, within MIT1002_03962 at 4447.129 kb on + strand, within MIT1002_03962 at 4447.185 kb on - strand, within MIT1002_03962 at 4447.251 kb on + strand, within MIT1002_03962 at 4447.263 kb on + strand, within MIT1002_03962 at 4447.263 kb on + strand, within MIT1002_03962 at 4447.270 kb on + strand, within MIT1002_03962 at 4447.271 kb on - strand, within MIT1002_03962
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 6 remove 4,444,043 - -0.1 4,444,056 + -1.2 4,444,063 + -0.3 4,444,078 - -0.3 4,444,083 - -3.5 4,444,104 + -0.7 4,444,112 - +0.0 4,444,112 - -1.8 4,444,184 - -2.9 4,444,199 + -2.1 4,444,199 + +1.5 4,444,199 + +1.2 4,444,207 - +1.2 4,444,207 - -4.3 4,444,207 - -0.2 4,444,255 - MIT1002_03960 0.13 -5.1 4,444,274 - MIT1002_03960 0.15 -5.1 4,444,276 + MIT1002_03960 0.16 +1.2 4,444,279 + MIT1002_03960 0.16 -1.4 4,444,279 + MIT1002_03960 0.16 -0.8 4,444,279 + MIT1002_03960 0.16 +0.2 4,444,279 + MIT1002_03960 0.16 +1.4 4,444,287 - MIT1002_03960 0.17 -1.1 4,444,287 - MIT1002_03960 0.17 +0.9 4,444,324 - MIT1002_03960 0.22 -3.4 4,444,372 + MIT1002_03960 0.27 +0.9 4,444,373 - MIT1002_03960 0.28 -2.6 4,444,380 - MIT1002_03960 0.28 -2.6 4,444,402 + MIT1002_03960 0.31 -1.6 4,444,402 + MIT1002_03960 0.31 -1.4 4,444,402 + MIT1002_03960 0.31 +3.5 4,444,410 - MIT1002_03960 0.32 -5.5 4,444,417 + MIT1002_03960 0.33 -1.1 4,444,425 - MIT1002_03960 0.34 -0.6 4,444,425 - MIT1002_03960 0.34 -1.4 4,444,506 + MIT1002_03960 0.44 -0.9 4,444,506 - MIT1002_03960 0.44 +0.2 4,444,514 - MIT1002_03960 0.45 +0.5 4,444,514 - MIT1002_03960 0.45 -2.0 4,444,520 + MIT1002_03960 0.46 +1.0 4,444,528 - MIT1002_03960 0.47 -1.8 4,444,625 + MIT1002_03960 0.58 -1.4 4,444,681 - MIT1002_03960 0.65 -1.9 4,444,841 - MIT1002_03960 0.85 -5.7 4,444,843 + MIT1002_03960 0.85 +0.0 4,444,843 + MIT1002_03960 0.85 +0.2 4,444,843 + MIT1002_03960 0.85 +0.5 4,444,843 + MIT1002_03960 0.85 +0.6 4,444,843 + MIT1002_03960 0.85 -0.5 4,444,851 - MIT1002_03960 0.86 -2.0 4,444,851 - MIT1002_03960 0.86 -2.8 4,444,851 - MIT1002_03960 0.86 -1.6 4,444,851 - MIT1002_03960 0.86 -2.6 4,444,851 - MIT1002_03960 0.86 -1.5 4,444,851 - MIT1002_03960 0.86 -2.5 4,444,851 - MIT1002_03960 0.86 +0.7 4,444,851 - MIT1002_03960 0.86 +0.9 4,444,872 - MIT1002_03960 0.89 -1.0 4,444,985 - -3.0 4,445,038 + -0.8 4,445,038 + -1.8 4,445,038 + -2.8 4,445,046 - -2.1 4,445,056 - -1.7 4,445,063 - -0.3 4,445,084 - -2.1 4,445,100 + -2.8 4,445,100 - -1.8 4,445,158 + MIT1002_03961 0.13 -5.4 4,445,173 + MIT1002_03961 0.14 -1.0 4,445,173 + MIT1002_03961 0.14 -3.9 4,445,173 + MIT1002_03961 0.14 -0.1 4,445,181 - MIT1002_03961 0.15 -2.1 4,445,181 - MIT1002_03961 0.15 -2.7 4,445,260 - MIT1002_03961 0.21 -0.7 4,445,281 - MIT1002_03961 0.22 -4.6 4,445,307 - MIT1002_03961 0.24 -1.4 4,445,338 - MIT1002_03961 0.27 +0.3 4,445,389 - MIT1002_03961 0.31 -1.0 4,445,469 + MIT1002_03961 0.37 -2.6 4,445,469 + MIT1002_03961 0.37 -1.0 4,445,554 + MIT1002_03961 0.44 -3.5 4,445,565 + MIT1002_03961 0.44 -0.8 4,445,565 + MIT1002_03961 0.44 -1.9 4,445,630 + MIT1002_03961 0.49 +0.5 4,445,630 + MIT1002_03961 0.49 -2.0 4,445,630 + MIT1002_03961 0.49 -4.3 4,445,632 + MIT1002_03961 0.50 +0.2 4,445,638 - MIT1002_03961 0.50 -0.3 4,445,680 - MIT1002_03961 0.53 -1.0 4,445,723 - MIT1002_03961 0.57 -1.3 4,445,748 + MIT1002_03961 0.59 -6.2 4,445,769 - MIT1002_03961 0.60 -1.9 4,445,832 + MIT1002_03961 0.65 -4.4 4,445,838 + MIT1002_03961 0.66 +0.9 4,445,854 - MIT1002_03961 0.67 -3.7 4,445,888 + MIT1002_03961 0.69 +0.9 4,445,928 - MIT1002_03961 0.72 -2.5 4,445,930 - MIT1002_03961 0.73 +0.5 4,445,940 - MIT1002_03961 0.73 -1.4 4,445,964 + MIT1002_03961 0.75 -1.9 4,445,964 + MIT1002_03961 0.75 -3.4 4,445,983 + MIT1002_03961 0.77 -2.6 4,445,988 + MIT1002_03961 0.77 -2.7 4,445,988 + MIT1002_03961 0.77 -1.7 4,445,988 + MIT1002_03961 0.77 -5.6 4,445,988 + MIT1002_03961 0.77 -3.1 4,445,988 + MIT1002_03961 0.77 -2.6 4,445,988 + MIT1002_03961 0.77 -0.2 4,445,996 - MIT1002_03961 0.78 -3.2 4,445,996 - MIT1002_03961 0.78 -3.0 4,445,996 - MIT1002_03961 0.78 -1.1 4,445,996 - MIT1002_03961 0.78 -1.7 4,445,996 - MIT1002_03961 0.78 -0.6 4,446,015 - MIT1002_03961 0.79 -3.6 4,446,073 - MIT1002_03961 0.84 -0.2 4,446,099 - MIT1002_03961 0.86 -2.0 4,446,101 + MIT1002_03961 0.86 -3.1 4,446,121 + MIT1002_03961 0.87 -5.3 4,446,123 + MIT1002_03961 0.88 -4.3 4,446,131 - MIT1002_03961 0.88 -0.9 4,446,160 - -3.6 4,446,189 + -8.4 4,446,199 + -2.7 4,446,199 + +0.5 4,446,207 - -2.6 4,446,214 + -2.4 4,446,214 + +0.9 4,446,222 - -0.3 4,446,234 - -3.1 4,446,277 - -1.6 4,446,283 + +0.7 4,446,318 + -0.6 4,446,318 + +1.2 4,446,326 - +1.2 4,446,326 - -1.0 4,446,326 - +0.7 4,446,326 - -0.7 4,446,326 - -0.8 4,446,326 - -1.4 4,446,326 - +2.2 4,446,378 + -0.8 4,446,378 + +0.1 4,446,378 + +0.8 4,446,378 + +0.7 4,446,378 + +0.8 4,446,378 + -0.0 4,446,378 + -0.3 4,446,378 + -0.2 4,446,378 + +0.7 4,446,386 - +0.8 4,446,386 - -0.9 4,446,386 - +1.4 4,446,386 - +0.2 4,446,386 - +2.4 4,446,386 - +0.6 4,446,386 - +0.8 4,446,386 - +1.7 4,446,386 - -0.3 4,446,386 - +0.3 4,446,461 + +1.8 4,446,469 - +2.5 4,446,471 - +1.5 4,446,484 - +0.6 4,446,515 - +1.7 4,446,579 + +0.2 4,446,587 - -2.1 4,446,604 + +0.1 4,446,612 - -0.9 4,446,613 - -1.9 4,446,694 + -0.3 4,446,739 + -1.6 4,446,739 + -0.5 4,446,764 + +0.0 4,446,764 + +0.6 4,446,764 + +0.2 4,446,765 - +0.7 4,446,794 + +3.0 4,446,807 - -0.5 4,446,837 + MIT1002_03962 0.12 -0.9 4,446,872 - MIT1002_03962 0.16 +0.0 4,446,873 - MIT1002_03962 0.16 +0.2 4,446,927 + MIT1002_03962 0.24 -0.5 4,446,985 + MIT1002_03962 0.31 +0.5 4,446,985 + MIT1002_03962 0.31 -0.5 4,446,985 + MIT1002_03962 0.31 -0.3 4,447,003 - MIT1002_03962 0.34 +0.2 4,447,003 - MIT1002_03962 0.34 +0.3 4,447,038 + MIT1002_03962 0.38 +0.2 4,447,119 + MIT1002_03962 0.49 +0.5 4,447,129 + MIT1002_03962 0.50 -0.3 4,447,185 - MIT1002_03962 0.58 +0.2 4,447,251 + MIT1002_03962 0.67 +0.5 4,447,263 + MIT1002_03962 0.68 +0.7 4,447,263 + MIT1002_03962 0.68 +0.9 4,447,270 + MIT1002_03962 0.69 -0.9 4,447,271 - MIT1002_03962 0.69 +0.1
Or see this region's nucleotide sequence