Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03909

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 6
4,379,175	-		MIT1002_03907	0.53	-2.2
4,379,210	-		MIT1002_03907	0.55	+1.5
4,379,226	+		MIT1002_03907	0.57	-0.1
4,379,226	+		MIT1002_03907	0.57	-3.5
4,379,278	-		MIT1002_03907	0.60	-1.1
4,379,388	+		MIT1002_03907	0.68	-3.0
4,379,406	-		MIT1002_03907	0.69	-1.9
4,379,519	+		MIT1002_03907	0.78	+1.2
4,379,527	+		MIT1002_03907	0.78	-2.3
4,379,550	-		MIT1002_03907	0.80	-1.9
4,379,574	+		MIT1002_03907	0.82	-3.3
4,379,687	-		MIT1002_03907	0.90	-4.2
4,379,794	-				+0.5
4,379,803	+				-0.9
4,379,819	+				-2.5
4,379,837	-				+0.2
4,379,862	+				-0.1
4,379,942	-		MIT1002_03908	0.36	-2.3
4,379,986	-		MIT1002_03908	0.51	-1.5
4,380,024	+		MIT1002_03908	0.65	+0.9
4,380,032	-		MIT1002_03908	0.68	-5.4
4,380,032	-		MIT1002_03908	0.68	-1.7
4,380,032	-		MIT1002_03908	0.68	-1.3
4,380,032	-		MIT1002_03908	0.68	-2.2
4,380,032	-		MIT1002_03908	0.68	-2.5
4,380,032	-		MIT1002_03908	0.68	-7.0
4,380,131	-				-3.6
4,380,132	+				+0.3
4,380,154	-				-1.3
4,380,220	+				+1.5
4,380,269	-		MIT1002_03909	0.12	-2.3
4,380,287	-		MIT1002_03909	0.14	-0.7
4,380,308	+		MIT1002_03909	0.16	-1.4
4,380,337	+		MIT1002_03909	0.18	-1.1
4,380,337	+		MIT1002_03909	0.18	-3.0
4,380,345	-		MIT1002_03909	0.19	-1.9
4,380,385	-		MIT1002_03909	0.22	-0.7
4,380,472	-		MIT1002_03909	0.30	-2.4
4,380,495	+		MIT1002_03909	0.32	-7.7
4,380,495	+		MIT1002_03909	0.32	-2.9
4,380,649	-		MIT1002_03909	0.45	-2.3
4,380,666	+		MIT1002_03909	0.47	+0.0
4,380,669	-		MIT1002_03909	0.47	-0.6
4,380,817	+		MIT1002_03909	0.60	-3.0
4,380,875	-		MIT1002_03909	0.65	-1.6
4,380,984	-		MIT1002_03909	0.74	+0.5
4,381,032	-		MIT1002_03909	0.78	-3.4
4,381,043	-		MIT1002_03909	0.79	-2.6
4,381,055	+		MIT1002_03909	0.80	-1.5
4,381,139	+		MIT1002_03909	0.88	-2.7
4,381,139	+		MIT1002_03909	0.88	-4.4
4,381,147	-		MIT1002_03909	0.88	-1.3
4,381,155	+		MIT1002_03909	0.89	-4.3
4,381,195	+				+0.5
4,381,200	+				+1.5
4,381,200	+				-0.7
4,381,321	+				-0.6
4,381,321	+				-1.7
4,381,331	+				-0.7
4,381,339	-				-0.9
4,381,339	-				+0.3
4,381,417	+				+0.5
4,381,417	+				+1.7
4,381,473	+				-1.1
4,381,642	-				+1.4
4,381,657	+				+1.3
4,381,765	+				-0.1
4,381,782	+				-0.6
4,381,790	-				-0.7
4,381,790	-				+0.3
4,381,790	-				+0.6
4,381,790	-				-0.2
4,381,790	-				-0.6
4,381,805	+				+1.6
4,381,871	-				+2.2
4,381,940	+				-0.7
4,381,985	+				-0.3
4,382,012	+				-0.7
4,382,112	-				-0.3
4,382,144	+		MIT1002_03910	0.11	+0.3
4,382,144	+		MIT1002_03910	0.11	-1.2
4,382,152	-		MIT1002_03910	0.11	+0.2
4,382,152	-		MIT1002_03910	0.11	-1.3
4,382,206	+		MIT1002_03910	0.13	-1.8
4,382,239	+		MIT1002_03910	0.14	-0.2
4,382,239	+		MIT1002_03910	0.14	+2.8
4,382,239	+		MIT1002_03910	0.14	+0.5
4,382,239	+		MIT1002_03910	0.14	+1.2
4,382,239	+		MIT1002_03910	0.14	+0.5
4,382,247	-		MIT1002_03910	0.15	-0.5
4,382,247	-		MIT1002_03910	0.15	+1.7
4,382,247	-		MIT1002_03910	0.15	-0.6
4,382,247	-		MIT1002_03910	0.15	-1.9
4,382,247	-		MIT1002_03910	0.15	+0.2
4,382,247	-		MIT1002_03910	0.15	-0.3
4,382,247	-		MIT1002_03910	0.15	+0.1
4,382,247	-		MIT1002_03910	0.15	+1.8
4,382,247	-		MIT1002_03910	0.15	+2.5
4,382,274	-		MIT1002_03910	0.15	+1.1
4,382,276	+		MIT1002_03910	0.16	-0.4