Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03907

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 6
4,377,449	-		MIT1002_03905	0.88	-0.1
4,377,559	-				-0.2
4,377,634	+				+1.3
4,377,642	-				-1.9
4,377,668	-				-0.1
4,377,702	+				+1.5
4,377,702	+				-0.4
4,377,702	+				+2.1
4,377,702	+				+1.5
4,377,705	-				-0.8
4,377,710	-				-0.5
4,377,738	+				+0.7
4,377,746	-				+0.6
4,377,752	+				+0.4
4,377,752	+				-0.1
4,377,752	+				+0.9
4,377,760	-				+0.6
4,377,912	-		MIT1002_03906	0.19	+1.5
4,378,011	+		MIT1002_03906	0.42	+0.2
4,378,014	-		MIT1002_03906	0.43	-0.1
4,378,019	+		MIT1002_03906	0.44	+0.7
4,378,112	+		MIT1002_03906	0.66	-2.0
4,378,253	+				+1.5
4,378,253	-				-2.3
4,378,267	+				+0.5
4,378,307	+				-1.5
4,378,344	-				-0.4
4,378,357	-				-1.4
4,378,377	-				-0.8
4,378,377	-				-1.3
4,378,438	+				+1.1
4,378,438	+				+0.0
4,378,438	+				-1.0
4,378,438	+				-0.5
4,378,446	-				+0.8
4,378,446	-				-0.3
4,378,446	-				-1.3
4,378,487	+				-3.6
4,378,492	+				-1.2
4,378,492	+				-2.7
4,378,492	+				-3.7
4,378,492	+				-0.4
4,378,500	-				-1.4
4,378,500	-				-1.2
4,378,602	-		MIT1002_03907	0.12	-4.1
4,378,620	+		MIT1002_03907	0.13	-1.0
4,378,639	-		MIT1002_03907	0.14	-1.3
4,378,658	+		MIT1002_03907	0.16	-2.1
4,378,660	-		MIT1002_03907	0.16	-2.6
4,378,660	-		MIT1002_03907	0.16	-0.5
4,378,662	-		MIT1002_03907	0.16	-1.7
4,378,703	+		MIT1002_03907	0.19	-2.5
4,378,710	+		MIT1002_03907	0.19	-2.8
4,378,710	+		MIT1002_03907	0.19	-2.2
4,378,718	-		MIT1002_03907	0.20	-1.5
4,378,718	-		MIT1002_03907	0.20	-0.3
4,378,718	-		MIT1002_03907	0.20	-2.1
4,378,718	-		MIT1002_03907	0.20	-0.1
4,378,800	-		MIT1002_03907	0.26	-1.0
4,378,802	-		MIT1002_03907	0.26	-2.4
4,378,908	+		MIT1002_03907	0.34	-1.7
4,378,914	-		MIT1002_03907	0.34	-6.6
4,378,914	-		MIT1002_03907	0.34	-2.6
4,378,998	-		MIT1002_03907	0.40	-2.7
4,379,041	+		MIT1002_03907	0.43	-3.2
4,379,041	+		MIT1002_03907	0.43	-3.1
4,379,041	+		MIT1002_03907	0.43	-1.4
4,379,041	+		MIT1002_03907	0.43	-2.1
4,379,041	+		MIT1002_03907	0.43	-2.9
4,379,041	+		MIT1002_03907	0.43	-2.4
4,379,048	+		MIT1002_03907	0.44	-2.8
4,379,049	-		MIT1002_03907	0.44	-3.2
4,379,049	-		MIT1002_03907	0.44	-2.4
4,379,120	-		MIT1002_03907	0.49	-1.3
4,379,175	-		MIT1002_03907	0.53	-2.2
4,379,210	-		MIT1002_03907	0.55	+1.5
4,379,226	+		MIT1002_03907	0.57	-0.1
4,379,226	+		MIT1002_03907	0.57	-3.5
4,379,278	-		MIT1002_03907	0.60	-1.1
4,379,388	+		MIT1002_03907	0.68	-3.0
4,379,406	-		MIT1002_03907	0.69	-1.9
4,379,519	+		MIT1002_03907	0.78	+1.2
4,379,527	+		MIT1002_03907	0.78	-2.3
4,379,550	-		MIT1002_03907	0.80	-1.9
4,379,574	+		MIT1002_03907	0.82	-3.3
4,379,687	-		MIT1002_03907	0.90	-4.2
4,379,794	-				+0.5
4,379,803	+				-0.9
4,379,819	+				-2.5
4,379,837	-				+0.2
4,379,862	+				-0.1
4,379,942	-		MIT1002_03908	0.36	-2.3
4,379,986	-		MIT1002_03908	0.51	-1.5
4,380,024	+		MIT1002_03908	0.65	+0.9
4,380,032	-		MIT1002_03908	0.68	-5.4
4,380,032	-		MIT1002_03908	0.68	-1.7
4,380,032	-		MIT1002_03908	0.68	-1.3
4,380,032	-		MIT1002_03908	0.68	-2.2
4,380,032	-		MIT1002_03908	0.68	-2.5
4,380,032	-		MIT1002_03908	0.68	-7.0
4,380,131	-				-3.6
4,380,132	+				+0.3
4,380,154	-				-1.3
4,380,220	+				+1.5
4,380,269	-		MIT1002_03909	0.12	-2.3
4,380,287	-		MIT1002_03909	0.14	-0.7
4,380,308	+		MIT1002_03909	0.16	-1.4
4,380,337	+		MIT1002_03909	0.18	-1.1
4,380,337	+		MIT1002_03909	0.18	-3.0
4,380,345	-		MIT1002_03909	0.19	-1.9
4,380,385	-		MIT1002_03909	0.22	-0.7
4,380,472	-		MIT1002_03909	0.30	-2.4
4,380,495	+		MIT1002_03909	0.32	-7.7
4,380,495	+		MIT1002_03909	0.32	-2.9
4,380,649	-		MIT1002_03909	0.45	-2.3
4,380,666	+		MIT1002_03909	0.47	+0.0
4,380,669	-		MIT1002_03909	0.47	-0.6
4,380,817	+		MIT1002_03909	0.60	-3.0