Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_03833 and MIT1002_03834 are separated by 307 nucleotides MIT1002_03834 and MIT1002_03835 are separated by 122 nucleotides
MIT1002_03833: MIT1002_03833 - putative symporter YidK, at 4,283,366 to 4,285,093
_03833
MIT1002_03834: MIT1002_03834 - hypothetical protein, at 4,285,401 to 4,287,809
_03834
MIT1002_03835: MIT1002_03835 - Cadmium, cobalt and zinc/H(+)-K(+) antiporter, at 4,287,932 to 4,288,927
_03835
Position (kb) 4285
4286
4287
4288 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4284.413 kb on + strand, within MIT1002_03833 at 4284.413 kb on + strand, within MIT1002_03833 at 4284.413 kb on + strand, within MIT1002_03833 at 4284.415 kb on + strand, within MIT1002_03833 at 4284.423 kb on - strand, within MIT1002_03833 at 4284.423 kb on - strand, within MIT1002_03833 at 4284.511 kb on - strand, within MIT1002_03833 at 4284.527 kb on + strand, within MIT1002_03833 at 4284.564 kb on - strand, within MIT1002_03833 at 4284.595 kb on + strand, within MIT1002_03833 at 4284.638 kb on - strand, within MIT1002_03833 at 4284.708 kb on + strand, within MIT1002_03833 at 4284.716 kb on - strand, within MIT1002_03833 at 4284.718 kb on + strand, within MIT1002_03833 at 4284.718 kb on + strand, within MIT1002_03833 at 4284.718 kb on + strand, within MIT1002_03833 at 4284.718 kb on + strand, within MIT1002_03833 at 4284.726 kb on - strand, within MIT1002_03833 at 4284.726 kb on - strand, within MIT1002_03833 at 4284.752 kb on + strand, within MIT1002_03833 at 4284.811 kb on + strand, within MIT1002_03833 at 4284.811 kb on + strand, within MIT1002_03833 at 4284.819 kb on - strand, within MIT1002_03833 at 4284.879 kb on + strand, within MIT1002_03833 at 4284.889 kb on - strand, within MIT1002_03833 at 4284.941 kb on + strand at 4284.959 kb on + strand at 4284.991 kb on - strand at 4285.037 kb on - strand at 4285.274 kb on + strand at 4285.274 kb on + strand at 4285.276 kb on + strand at 4285.276 kb on + strand at 4285.276 kb on + strand at 4285.276 kb on + strand at 4285.282 kb on - strand at 4285.284 kb on - strand at 4285.284 kb on - strand at 4285.284 kb on - strand at 4285.284 kb on - strand at 4285.358 kb on + strand at 4285.358 kb on + strand at 4285.366 kb on - strand at 4285.366 kb on - strand at 4285.366 kb on - strand at 4285.366 kb on - strand at 4285.389 kb on + strand at 4285.397 kb on - strand at 4285.498 kb on - strand at 4285.521 kb on - strand at 4285.539 kb on - strand at 4285.596 kb on + strand at 4285.596 kb on + strand at 4285.610 kb on - strand at 4285.662 kb on + strand, within MIT1002_03834 at 4285.672 kb on + strand, within MIT1002_03834 at 4285.689 kb on + strand, within MIT1002_03834 at 4285.710 kb on + strand, within MIT1002_03834 at 4285.718 kb on - strand, within MIT1002_03834 at 4285.776 kb on + strand, within MIT1002_03834 at 4285.786 kb on + strand, within MIT1002_03834 at 4285.791 kb on + strand, within MIT1002_03834 at 4285.791 kb on + strand, within MIT1002_03834 at 4285.791 kb on + strand, within MIT1002_03834 at 4285.791 kb on + strand, within MIT1002_03834 at 4285.799 kb on - strand, within MIT1002_03834 at 4285.799 kb on - strand, within MIT1002_03834 at 4285.799 kb on - strand, within MIT1002_03834 at 4285.799 kb on - strand, within MIT1002_03834 at 4285.814 kb on - strand, within MIT1002_03834 at 4285.891 kb on + strand, within MIT1002_03834 at 4286.012 kb on - strand, within MIT1002_03834 at 4286.029 kb on + strand, within MIT1002_03834 at 4286.029 kb on + strand, within MIT1002_03834 at 4286.029 kb on + strand, within MIT1002_03834 at 4286.037 kb on - strand, within MIT1002_03834 at 4286.051 kb on + strand, within MIT1002_03834 at 4286.073 kb on + strand, within MIT1002_03834 at 4286.105 kb on + strand, within MIT1002_03834 at 4286.105 kb on + strand, within MIT1002_03834 at 4286.105 kb on + strand, within MIT1002_03834 at 4286.105 kb on + strand, within MIT1002_03834 at 4286.124 kb on + strand, within MIT1002_03834 at 4286.213 kb on - strand, within MIT1002_03834 at 4286.214 kb on + strand, within MIT1002_03834 at 4286.236 kb on - strand, within MIT1002_03834 at 4286.334 kb on - strand, within MIT1002_03834 at 4286.337 kb on + strand, within MIT1002_03834 at 4286.360 kb on + strand, within MIT1002_03834 at 4286.422 kb on - strand, within MIT1002_03834 at 4286.496 kb on - strand, within MIT1002_03834 at 4286.503 kb on + strand, within MIT1002_03834 at 4286.511 kb on - strand, within MIT1002_03834 at 4286.511 kb on - strand, within MIT1002_03834 at 4286.511 kb on - strand, within MIT1002_03834 at 4286.558 kb on - strand, within MIT1002_03834 at 4286.662 kb on - strand, within MIT1002_03834 at 4286.699 kb on + strand, within MIT1002_03834 at 4286.699 kb on + strand, within MIT1002_03834 at 4286.707 kb on - strand, within MIT1002_03834 at 4286.707 kb on - strand, within MIT1002_03834 at 4286.716 kb on + strand, within MIT1002_03834 at 4286.732 kb on - strand, within MIT1002_03834 at 4286.766 kb on - strand, within MIT1002_03834 at 4286.862 kb on + strand, within MIT1002_03834 at 4286.885 kb on + strand, within MIT1002_03834 at 4286.885 kb on + strand, within MIT1002_03834 at 4286.906 kb on + strand, within MIT1002_03834 at 4286.906 kb on + strand, within MIT1002_03834 at 4286.906 kb on + strand, within MIT1002_03834 at 4286.906 kb on + strand, within MIT1002_03834 at 4286.906 kb on + strand, within MIT1002_03834 at 4286.906 kb on + strand, within MIT1002_03834 at 4286.906 kb on + strand, within MIT1002_03834 at 4286.906 kb on + strand, within MIT1002_03834 at 4286.906 kb on + strand, within MIT1002_03834 at 4286.906 kb on + strand, within MIT1002_03834 at 4286.906 kb on + strand, within MIT1002_03834 at 4286.906 kb on + strand, within MIT1002_03834 at 4286.906 kb on + strand, within MIT1002_03834 at 4286.908 kb on + strand, within MIT1002_03834 at 4286.914 kb on - strand, within MIT1002_03834 at 4286.914 kb on - strand, within MIT1002_03834 at 4286.914 kb on - strand, within MIT1002_03834 at 4286.914 kb on - strand, within MIT1002_03834 at 4286.914 kb on - strand, within MIT1002_03834 at 4286.914 kb on - strand, within MIT1002_03834 at 4286.914 kb on - strand, within MIT1002_03834 at 4286.914 kb on - strand, within MIT1002_03834 at 4286.914 kb on - strand, within MIT1002_03834 at 4286.914 kb on - strand, within MIT1002_03834 at 4286.914 kb on - strand, within MIT1002_03834 at 4286.914 kb on - strand, within MIT1002_03834 at 4286.914 kb on - strand, within MIT1002_03834 at 4286.914 kb on - strand, within MIT1002_03834 at 4286.914 kb on - strand, within MIT1002_03834 at 4286.914 kb on - strand, within MIT1002_03834 at 4287.033 kb on - strand, within MIT1002_03834 at 4287.084 kb on - strand, within MIT1002_03834 at 4287.119 kb on + strand, within MIT1002_03834 at 4287.180 kb on + strand, within MIT1002_03834 at 4287.224 kb on + strand, within MIT1002_03834 at 4287.236 kb on + strand, within MIT1002_03834 at 4287.361 kb on + strand, within MIT1002_03834 at 4287.384 kb on + strand, within MIT1002_03834 at 4287.384 kb on + strand, within MIT1002_03834 at 4287.389 kb on + strand, within MIT1002_03834 at 4287.392 kb on - strand, within MIT1002_03834 at 4287.418 kb on + strand, within MIT1002_03834 at 4287.503 kb on - strand, within MIT1002_03834 at 4287.523 kb on + strand, within MIT1002_03834 at 4287.536 kb on + strand, within MIT1002_03834 at 4287.559 kb on + strand, within MIT1002_03834 at 4287.560 kb on - strand, within MIT1002_03834 at 4287.599 kb on + strand at 4287.602 kb on - strand at 4287.624 kb on + strand at 4287.716 kb on - strand at 4287.725 kb on + strand at 4287.751 kb on + strand at 4287.759 kb on - strand at 4287.759 kb on - strand at 4287.776 kb on - strand at 4287.811 kb on - strand at 4287.845 kb on - strand at 4287.891 kb on - strand at 4287.893 kb on - strand at 4287.963 kb on - strand at 4287.988 kb on + strand at 4288.039 kb on + strand, within MIT1002_03835 at 4288.047 kb on - strand, within MIT1002_03835 at 4288.048 kb on + strand, within MIT1002_03835 at 4288.099 kb on + strand, within MIT1002_03835 at 4288.109 kb on + strand, within MIT1002_03835 at 4288.117 kb on - strand, within MIT1002_03835 at 4288.117 kb on - strand, within MIT1002_03835 at 4288.144 kb on - strand, within MIT1002_03835 at 4288.144 kb on - strand, within MIT1002_03835 at 4288.260 kb on + strand, within MIT1002_03835 at 4288.343 kb on - strand, within MIT1002_03835 at 4288.343 kb on - strand, within MIT1002_03835 at 4288.343 kb on - strand, within MIT1002_03835 at 4288.343 kb on - strand, within MIT1002_03835 at 4288.353 kb on + strand, within MIT1002_03835 at 4288.367 kb on + strand, within MIT1002_03835 at 4288.434 kb on - strand, within MIT1002_03835 at 4288.554 kb on + strand, within MIT1002_03835 at 4288.619 kb on + strand, within MIT1002_03835 at 4288.620 kb on - strand, within MIT1002_03835 at 4288.627 kb on - strand, within MIT1002_03835 at 4288.627 kb on - strand, within MIT1002_03835 at 4288.659 kb on + strand, within MIT1002_03835 at 4288.688 kb on + strand, within MIT1002_03835 at 4288.688 kb on + strand, within MIT1002_03835 at 4288.695 kb on + strand, within MIT1002_03835 at 4288.696 kb on - strand, within MIT1002_03835 at 4288.703 kb on - strand, within MIT1002_03835 at 4288.719 kb on - strand, within MIT1002_03835
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 6 remove 4,284,413 + MIT1002_03833 0.61 +0.7 4,284,413 + MIT1002_03833 0.61 -0.6 4,284,413 + MIT1002_03833 0.61 -0.5 4,284,415 + MIT1002_03833 0.61 +0.7 4,284,423 - MIT1002_03833 0.61 +1.5 4,284,423 - MIT1002_03833 0.61 +1.5 4,284,511 - MIT1002_03833 0.66 -0.4 4,284,527 + MIT1002_03833 0.67 -0.9 4,284,564 - MIT1002_03833 0.69 +1.2 4,284,595 + MIT1002_03833 0.71 +0.4 4,284,638 - MIT1002_03833 0.74 -0.5 4,284,708 + MIT1002_03833 0.78 -1.2 4,284,716 - MIT1002_03833 0.78 -0.5 4,284,718 + MIT1002_03833 0.78 -1.3 4,284,718 + MIT1002_03833 0.78 +0.3 4,284,718 + MIT1002_03833 0.78 -0.9 4,284,718 + MIT1002_03833 0.78 -1.0 4,284,726 - MIT1002_03833 0.79 +1.5 4,284,726 - MIT1002_03833 0.79 +0.4 4,284,752 + MIT1002_03833 0.80 -0.9 4,284,811 + MIT1002_03833 0.84 -1.4 4,284,811 + MIT1002_03833 0.84 +1.6 4,284,819 - MIT1002_03833 0.84 -0.2 4,284,879 + MIT1002_03833 0.88 -1.4 4,284,889 - MIT1002_03833 0.88 -0.2 4,284,941 + +1.7 4,284,959 + -0.9 4,284,991 - -1.8 4,285,037 - -1.7 4,285,274 + -0.7 4,285,274 + +1.5 4,285,276 + +2.6 4,285,276 + -0.1 4,285,276 + -2.6 4,285,276 + +0.1 4,285,282 - -0.6 4,285,284 - -2.2 4,285,284 - +0.8 4,285,284 - +0.3 4,285,284 - -1.0 4,285,358 + +0.8 4,285,358 + -1.0 4,285,366 - -0.4 4,285,366 - -0.3 4,285,366 - -0.2 4,285,366 - -2.4 4,285,389 + +1.6 4,285,397 - -1.7 4,285,498 - +1.0 4,285,521 - +0.5 4,285,539 - +0.4 4,285,596 + -2.4 4,285,596 + +0.1 4,285,610 - +0.2 4,285,662 + MIT1002_03834 0.11 +1.1 4,285,672 + MIT1002_03834 0.11 -1.3 4,285,689 + MIT1002_03834 0.12 +0.6 4,285,710 + MIT1002_03834 0.13 -1.0 4,285,718 - MIT1002_03834 0.13 +0.5 4,285,776 + MIT1002_03834 0.16 -0.8 4,285,786 + MIT1002_03834 0.16 +2.2 4,285,791 + MIT1002_03834 0.16 -3.2 4,285,791 + MIT1002_03834 0.16 +0.8 4,285,791 + MIT1002_03834 0.16 +0.6 4,285,791 + MIT1002_03834 0.16 +1.4 4,285,799 - MIT1002_03834 0.17 -0.3 4,285,799 - MIT1002_03834 0.17 +1.2 4,285,799 - MIT1002_03834 0.17 +0.6 4,285,799 - MIT1002_03834 0.17 +0.0 4,285,814 - MIT1002_03834 0.17 -0.8 4,285,891 + MIT1002_03834 0.20 +0.8 4,286,012 - MIT1002_03834 0.25 -1.9 4,286,029 + MIT1002_03834 0.26 -0.1 4,286,029 + MIT1002_03834 0.26 +0.7 4,286,029 + MIT1002_03834 0.26 -0.2 4,286,037 - MIT1002_03834 0.26 -1.1 4,286,051 + MIT1002_03834 0.27 +0.4 4,286,073 + MIT1002_03834 0.28 +0.9 4,286,105 + MIT1002_03834 0.29 -0.4 4,286,105 + MIT1002_03834 0.29 -0.2 4,286,105 + MIT1002_03834 0.29 +0.1 4,286,105 + MIT1002_03834 0.29 +0.7 4,286,124 + MIT1002_03834 0.30 -1.5 4,286,213 - MIT1002_03834 0.34 -0.2 4,286,214 + MIT1002_03834 0.34 -1.2 4,286,236 - MIT1002_03834 0.35 -0.2 4,286,334 - MIT1002_03834 0.39 -0.5 4,286,337 + MIT1002_03834 0.39 +0.8 4,286,360 + MIT1002_03834 0.40 +0.1 4,286,422 - MIT1002_03834 0.42 +1.3 4,286,496 - MIT1002_03834 0.45 -0.6 4,286,503 + MIT1002_03834 0.46 +0.4 4,286,511 - MIT1002_03834 0.46 -0.2 4,286,511 - MIT1002_03834 0.46 -0.8 4,286,511 - MIT1002_03834 0.46 -0.9 4,286,558 - MIT1002_03834 0.48 +0.1 4,286,662 - MIT1002_03834 0.52 +1.2 4,286,699 + MIT1002_03834 0.54 +0.6 4,286,699 + MIT1002_03834 0.54 +2.5 4,286,707 - MIT1002_03834 0.54 +2.5 4,286,707 - MIT1002_03834 0.54 +0.6 4,286,716 + MIT1002_03834 0.55 -3.0 4,286,732 - MIT1002_03834 0.55 +1.5 4,286,766 - MIT1002_03834 0.57 -0.2 4,286,862 + MIT1002_03834 0.61 +0.5 4,286,885 + MIT1002_03834 0.62 +0.5 4,286,885 + MIT1002_03834 0.62 -0.4 4,286,906 + MIT1002_03834 0.62 +0.5 4,286,906 + MIT1002_03834 0.62 +0.6 4,286,906 + MIT1002_03834 0.62 +0.9 4,286,906 + MIT1002_03834 0.62 -1.9 4,286,906 + MIT1002_03834 0.62 -0.3 4,286,906 + MIT1002_03834 0.62 -0.5 4,286,906 + MIT1002_03834 0.62 -0.2 4,286,906 + MIT1002_03834 0.62 +0.9 4,286,906 + MIT1002_03834 0.62 -1.0 4,286,906 + MIT1002_03834 0.62 +1.5 4,286,906 + MIT1002_03834 0.62 -1.8 4,286,906 + MIT1002_03834 0.62 -1.2 4,286,906 + MIT1002_03834 0.62 -0.3 4,286,908 + MIT1002_03834 0.63 -0.4 4,286,914 - MIT1002_03834 0.63 -0.7 4,286,914 - MIT1002_03834 0.63 +0.4 4,286,914 - MIT1002_03834 0.63 +0.8 4,286,914 - MIT1002_03834 0.63 +0.0 4,286,914 - MIT1002_03834 0.63 +0.1 4,286,914 - MIT1002_03834 0.63 -1.2 4,286,914 - MIT1002_03834 0.63 -0.0 4,286,914 - MIT1002_03834 0.63 -0.8 4,286,914 - MIT1002_03834 0.63 +1.0 4,286,914 - MIT1002_03834 0.63 +0.6 4,286,914 - MIT1002_03834 0.63 -1.4 4,286,914 - MIT1002_03834 0.63 -0.3 4,286,914 - MIT1002_03834 0.63 +2.6 4,286,914 - MIT1002_03834 0.63 -1.0 4,286,914 - MIT1002_03834 0.63 -0.8 4,286,914 - MIT1002_03834 0.63 +3.1 4,287,033 - MIT1002_03834 0.68 +0.7 4,287,084 - MIT1002_03834 0.70 +0.5 4,287,119 + MIT1002_03834 0.71 +1.0 4,287,180 + MIT1002_03834 0.74 +0.6 4,287,224 + MIT1002_03834 0.76 -0.8 4,287,236 + MIT1002_03834 0.76 -0.2 4,287,361 + MIT1002_03834 0.81 -0.8 4,287,384 + MIT1002_03834 0.82 -1.1 4,287,384 + MIT1002_03834 0.82 +0.9 4,287,389 + MIT1002_03834 0.83 -0.2 4,287,392 - MIT1002_03834 0.83 -0.2 4,287,418 + MIT1002_03834 0.84 +1.1 4,287,503 - MIT1002_03834 0.87 +1.3 4,287,523 + MIT1002_03834 0.88 -0.8 4,287,536 + MIT1002_03834 0.89 +0.6 4,287,559 + MIT1002_03834 0.90 +0.0 4,287,560 - MIT1002_03834 0.90 -0.7 4,287,599 + +0.1 4,287,602 - -0.9 4,287,624 + +1.2 4,287,716 - -0.9 4,287,725 + -1.8 4,287,751 + -0.5 4,287,759 - -0.2 4,287,759 - +0.9 4,287,776 - +0.0 4,287,811 - +0.3 4,287,845 - -0.3 4,287,891 - -1.8 4,287,893 - +0.3 4,287,963 - +2.7 4,287,988 + +0.2 4,288,039 + MIT1002_03835 0.11 +0.0 4,288,047 - MIT1002_03835 0.12 -0.3 4,288,048 + MIT1002_03835 0.12 -1.1 4,288,099 + MIT1002_03835 0.17 -1.2 4,288,109 + MIT1002_03835 0.18 -0.3 4,288,117 - MIT1002_03835 0.19 -0.3 4,288,117 - MIT1002_03835 0.19 -1.8 4,288,144 - MIT1002_03835 0.21 -1.6 4,288,144 - MIT1002_03835 0.21 -1.0 4,288,260 + MIT1002_03835 0.33 +0.9 4,288,343 - MIT1002_03835 0.41 +0.3 4,288,343 - MIT1002_03835 0.41 -0.5 4,288,343 - MIT1002_03835 0.41 -0.9 4,288,343 - MIT1002_03835 0.41 +0.3 4,288,353 + MIT1002_03835 0.42 -0.2 4,288,367 + MIT1002_03835 0.44 +0.6 4,288,434 - MIT1002_03835 0.50 +0.7 4,288,554 + MIT1002_03835 0.62 +1.3 4,288,619 + MIT1002_03835 0.69 +0.7 4,288,620 - MIT1002_03835 0.69 +0.5 4,288,627 - MIT1002_03835 0.70 +1.0 4,288,627 - MIT1002_03835 0.70 -0.9 4,288,659 + MIT1002_03835 0.73 -0.2 4,288,688 + MIT1002_03835 0.76 -0.0 4,288,688 + MIT1002_03835 0.76 -0.1 4,288,695 + MIT1002_03835 0.77 -0.6 4,288,696 - MIT1002_03835 0.77 +0.5 4,288,703 - MIT1002_03835 0.77 +0.9 4,288,719 - MIT1002_03835 0.79 -0.7
Or see this region's nucleotide sequence