Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_03827 and MIT1002_03828 are separated by 6 nucleotides MIT1002_03828 and MIT1002_03829 are separated by 9 nucleotides
MIT1002_03827: MIT1002_03827 - hypothetical protein, at 4,276,229 to 4,277,233
_03827
MIT1002_03828: MIT1002_03828 - Taurine catabolism dioxygenase TauD, TfdA family, at 4,277,240 to 4,278,247
_03828
MIT1002_03829: MIT1002_03829 - putative oxidoreductase/MSMEI_2347, at 4,278,257 to 4,279,210
_03829
Position (kb)
4277
4278
4279 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2 at 4276.261 kb on + strand at 4276.269 kb on - strand at 4276.329 kb on + strand at 4276.330 kb on + strand, within MIT1002_03827 at 4276.330 kb on + strand, within MIT1002_03827 at 4276.337 kb on - strand, within MIT1002_03827 at 4276.338 kb on - strand, within MIT1002_03827 at 4276.338 kb on - strand, within MIT1002_03827 at 4276.499 kb on - strand, within MIT1002_03827 at 4276.578 kb on + strand, within MIT1002_03827 at 4276.600 kb on + strand, within MIT1002_03827 at 4276.608 kb on + strand, within MIT1002_03827 at 4276.608 kb on + strand, within MIT1002_03827 at 4276.608 kb on - strand, within MIT1002_03827 at 4276.610 kb on + strand, within MIT1002_03827 at 4276.618 kb on - strand, within MIT1002_03827 at 4276.618 kb on - strand, within MIT1002_03827 at 4276.618 kb on - strand, within MIT1002_03827 at 4276.631 kb on + strand, within MIT1002_03827 at 4276.659 kb on - strand, within MIT1002_03827 at 4276.744 kb on + strand, within MIT1002_03827 at 4276.744 kb on + strand, within MIT1002_03827 at 4276.752 kb on - strand, within MIT1002_03827 at 4276.820 kb on + strand, within MIT1002_03827 at 4276.931 kb on + strand, within MIT1002_03827 at 4276.941 kb on - strand, within MIT1002_03827 at 4276.948 kb on + strand, within MIT1002_03827 at 4276.956 kb on - strand, within MIT1002_03827 at 4276.956 kb on - strand, within MIT1002_03827 at 4276.956 kb on - strand, within MIT1002_03827 at 4276.964 kb on + strand, within MIT1002_03827 at 4276.972 kb on + strand, within MIT1002_03827 at 4276.997 kb on + strand, within MIT1002_03827 at 4277.048 kb on + strand, within MIT1002_03827 at 4277.064 kb on - strand, within MIT1002_03827 at 4277.066 kb on + strand, within MIT1002_03827 at 4277.066 kb on + strand, within MIT1002_03827 at 4277.066 kb on + strand, within MIT1002_03827 at 4277.105 kb on - strand, within MIT1002_03827 at 4277.122 kb on + strand, within MIT1002_03827 at 4277.122 kb on + strand, within MIT1002_03827 at 4277.136 kb on + strand at 4277.144 kb on - strand at 4277.260 kb on - strand at 4277.350 kb on - strand, within MIT1002_03828 at 4277.376 kb on + strand, within MIT1002_03828 at 4277.386 kb on + strand, within MIT1002_03828 at 4277.386 kb on + strand, within MIT1002_03828 at 4277.386 kb on + strand, within MIT1002_03828 at 4277.386 kb on + strand, within MIT1002_03828 at 4277.394 kb on - strand, within MIT1002_03828 at 4277.394 kb on - strand, within MIT1002_03828 at 4277.394 kb on - strand, within MIT1002_03828 at 4277.399 kb on + strand, within MIT1002_03828 at 4277.490 kb on + strand, within MIT1002_03828 at 4277.512 kb on + strand, within MIT1002_03828 at 4277.512 kb on + strand, within MIT1002_03828 at 4277.512 kb on + strand, within MIT1002_03828 at 4277.520 kb on - strand, within MIT1002_03828 at 4277.520 kb on - strand, within MIT1002_03828 at 4277.520 kb on - strand, within MIT1002_03828 at 4277.520 kb on - strand, within MIT1002_03828 at 4277.539 kb on + strand, within MIT1002_03828 at 4277.563 kb on + strand, within MIT1002_03828 at 4277.578 kb on + strand, within MIT1002_03828 at 4277.579 kb on - strand, within MIT1002_03828 at 4277.589 kb on + strand, within MIT1002_03828 at 4277.682 kb on - strand, within MIT1002_03828 at 4277.724 kb on - strand, within MIT1002_03828 at 4277.795 kb on + strand, within MIT1002_03828 at 4277.802 kb on + strand, within MIT1002_03828 at 4277.803 kb on + strand, within MIT1002_03828 at 4277.803 kb on - strand, within MIT1002_03828 at 4277.811 kb on - strand, within MIT1002_03828 at 4277.816 kb on - strand, within MIT1002_03828 at 4277.816 kb on - strand, within MIT1002_03828 at 4277.938 kb on + strand, within MIT1002_03828 at 4277.946 kb on - strand, within MIT1002_03828 at 4277.958 kb on + strand, within MIT1002_03828 at 4277.966 kb on - strand, within MIT1002_03828 at 4277.966 kb on - strand, within MIT1002_03828 at 4277.966 kb on - strand, within MIT1002_03828 at 4277.966 kb on - strand, within MIT1002_03828 at 4277.966 kb on - strand, within MIT1002_03828 at 4277.966 kb on - strand, within MIT1002_03828 at 4277.966 kb on - strand, within MIT1002_03828 at 4277.996 kb on + strand, within MIT1002_03828 at 4277.996 kb on + strand, within MIT1002_03828 at 4278.028 kb on + strand, within MIT1002_03828 at 4278.135 kb on - strand, within MIT1002_03828 at 4278.138 kb on + strand, within MIT1002_03828 at 4278.210 kb on - strand at 4278.215 kb on + strand at 4278.215 kb on + strand at 4278.223 kb on - strand at 4278.223 kb on - strand at 4278.223 kb on - strand at 4278.257 kb on - strand at 4278.279 kb on + strand at 4278.289 kb on - strand at 4278.289 kb on - strand at 4278.360 kb on - strand, within MIT1002_03829 at 4278.420 kb on - strand, within MIT1002_03829 at 4278.458 kb on + strand, within MIT1002_03829 at 4278.599 kb on - strand, within MIT1002_03829 at 4278.606 kb on - strand, within MIT1002_03829 at 4278.606 kb on - strand, within MIT1002_03829 at 4278.639 kb on + strand, within MIT1002_03829 at 4278.639 kb on + strand, within MIT1002_03829 at 4278.643 kb on - strand, within MIT1002_03829 at 4278.647 kb on + strand, within MIT1002_03829 at 4278.647 kb on + strand, within MIT1002_03829 at 4278.693 kb on + strand, within MIT1002_03829 at 4278.782 kb on + strand, within MIT1002_03829 at 4278.789 kb on + strand, within MIT1002_03829 at 4278.810 kb on - strand, within MIT1002_03829 at 4278.869 kb on + strand, within MIT1002_03829 at 4278.869 kb on + strand, within MIT1002_03829 at 4278.897 kb on + strand, within MIT1002_03829 at 4278.905 kb on - strand, within MIT1002_03829 at 4278.905 kb on - strand, within MIT1002_03829 at 4278.922 kb on - strand, within MIT1002_03829 at 4278.976 kb on + strand, within MIT1002_03829 at 4279.021 kb on + strand, within MIT1002_03829 at 4279.029 kb on - strand, within MIT1002_03829 at 4279.056 kb on + strand, within MIT1002_03829 at 4279.058 kb on + strand, within MIT1002_03829 at 4279.096 kb on - strand, within MIT1002_03829 at 4279.096 kb on - strand, within MIT1002_03829 at 4279.104 kb on + strand, within MIT1002_03829 at 4279.125 kb on + strand at 4279.125 kb on + strand at 4279.125 kb on + strand at 4279.134 kb on + strand at 4279.222 kb on + strand at 4279.237 kb on + strand at 4279.246 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 6 remove 4,276,261 + +0.5 4,276,269 - +1.1 4,276,329 + -2.0 4,276,330 + MIT1002_03827 0.10 +2.1 4,276,330 + MIT1002_03827 0.10 +1.2 4,276,337 - MIT1002_03827 0.11 +0.3 4,276,338 - MIT1002_03827 0.11 -2.4 4,276,338 - MIT1002_03827 0.11 -1.0 4,276,499 - MIT1002_03827 0.27 +0.0 4,276,578 + MIT1002_03827 0.35 +1.2 4,276,600 + MIT1002_03827 0.37 -0.5 4,276,608 + MIT1002_03827 0.38 +2.2 4,276,608 + MIT1002_03827 0.38 +2.1 4,276,608 - MIT1002_03827 0.38 -3.3 4,276,610 + MIT1002_03827 0.38 +1.7 4,276,618 - MIT1002_03827 0.39 +0.5 4,276,618 - MIT1002_03827 0.39 +0.3 4,276,618 - MIT1002_03827 0.39 +0.2 4,276,631 + MIT1002_03827 0.40 -3.2 4,276,659 - MIT1002_03827 0.43 +0.3 4,276,744 + MIT1002_03827 0.51 +1.1 4,276,744 + MIT1002_03827 0.51 +0.4 4,276,752 - MIT1002_03827 0.52 -0.4 4,276,820 + MIT1002_03827 0.59 -0.5 4,276,931 + MIT1002_03827 0.70 -0.3 4,276,941 - MIT1002_03827 0.71 +0.3 4,276,948 + MIT1002_03827 0.72 +0.3 4,276,956 - MIT1002_03827 0.72 +1.5 4,276,956 - MIT1002_03827 0.72 -1.5 4,276,956 - MIT1002_03827 0.72 +1.5 4,276,964 + MIT1002_03827 0.73 -1.7 4,276,972 + MIT1002_03827 0.74 -0.8 4,276,997 + MIT1002_03827 0.76 +0.6 4,277,048 + MIT1002_03827 0.81 -0.2 4,277,064 - MIT1002_03827 0.83 -0.2 4,277,066 + MIT1002_03827 0.83 +1.2 4,277,066 + MIT1002_03827 0.83 -1.5 4,277,066 + MIT1002_03827 0.83 -0.1 4,277,105 - MIT1002_03827 0.87 -0.2 4,277,122 + MIT1002_03827 0.89 +0.6 4,277,122 + MIT1002_03827 0.89 +0.5 4,277,136 + -0.6 4,277,144 - +0.1 4,277,260 - -1.4 4,277,350 - MIT1002_03828 0.11 -2.5 4,277,376 + MIT1002_03828 0.13 -3.5 4,277,386 + MIT1002_03828 0.14 -2.4 4,277,386 + MIT1002_03828 0.14 +1.5 4,277,386 + MIT1002_03828 0.14 -0.8 4,277,386 + MIT1002_03828 0.14 -1.3 4,277,394 - MIT1002_03828 0.15 +1.2 4,277,394 - MIT1002_03828 0.15 -2.3 4,277,394 - MIT1002_03828 0.15 -0.4 4,277,399 + MIT1002_03828 0.16 -0.8 4,277,490 + MIT1002_03828 0.25 -0.5 4,277,512 + MIT1002_03828 0.27 -2.1 4,277,512 + MIT1002_03828 0.27 -0.6 4,277,512 + MIT1002_03828 0.27 -1.9 4,277,520 - MIT1002_03828 0.28 -0.7 4,277,520 - MIT1002_03828 0.28 -2.4 4,277,520 - MIT1002_03828 0.28 -1.3 4,277,520 - MIT1002_03828 0.28 -4.4 4,277,539 + MIT1002_03828 0.30 -0.3 4,277,563 + MIT1002_03828 0.32 -1.8 4,277,578 + MIT1002_03828 0.34 +0.9 4,277,579 - MIT1002_03828 0.34 -2.8 4,277,589 + MIT1002_03828 0.35 -0.3 4,277,682 - MIT1002_03828 0.44 -0.3 4,277,724 - MIT1002_03828 0.48 -5.1 4,277,795 + MIT1002_03828 0.55 -2.0 4,277,802 + MIT1002_03828 0.56 -3.1 4,277,803 + MIT1002_03828 0.56 -4.3 4,277,803 - MIT1002_03828 0.56 -0.1 4,277,811 - MIT1002_03828 0.57 +0.0 4,277,816 - MIT1002_03828 0.57 -1.4 4,277,816 - MIT1002_03828 0.57 -1.0 4,277,938 + MIT1002_03828 0.69 -2.5 4,277,946 - MIT1002_03828 0.70 -3.8 4,277,958 + MIT1002_03828 0.71 -1.8 4,277,966 - MIT1002_03828 0.72 -2.2 4,277,966 - MIT1002_03828 0.72 -0.4 4,277,966 - MIT1002_03828 0.72 -2.3 4,277,966 - MIT1002_03828 0.72 -3.3 4,277,966 - MIT1002_03828 0.72 -1.3 4,277,966 - MIT1002_03828 0.72 -3.3 4,277,966 - MIT1002_03828 0.72 -1.9 4,277,996 + MIT1002_03828 0.75 -0.1 4,277,996 + MIT1002_03828 0.75 -0.3 4,278,028 + MIT1002_03828 0.78 -2.3 4,278,135 - MIT1002_03828 0.89 -1.0 4,278,138 + MIT1002_03828 0.89 -3.8 4,278,210 - -1.3 4,278,215 + +1.2 4,278,215 + -0.5 4,278,223 - -1.8 4,278,223 - -2.2 4,278,223 - +0.3 4,278,257 - -1.0 4,278,279 + -0.6 4,278,289 - +0.7 4,278,289 - +0.1 4,278,360 - MIT1002_03829 0.11 +0.0 4,278,420 - MIT1002_03829 0.17 +0.0 4,278,458 + MIT1002_03829 0.21 -1.3 4,278,599 - MIT1002_03829 0.36 +0.4 4,278,606 - MIT1002_03829 0.37 -1.5 4,278,606 - MIT1002_03829 0.37 -1.6 4,278,639 + MIT1002_03829 0.40 -2.6 4,278,639 + MIT1002_03829 0.40 -3.6 4,278,643 - MIT1002_03829 0.40 +0.5 4,278,647 + MIT1002_03829 0.41 -0.2 4,278,647 + MIT1002_03829 0.41 -2.8 4,278,693 + MIT1002_03829 0.46 -1.1 4,278,782 + MIT1002_03829 0.55 -0.6 4,278,789 + MIT1002_03829 0.56 -0.7 4,278,810 - MIT1002_03829 0.58 -1.7 4,278,869 + MIT1002_03829 0.64 -2.1 4,278,869 + MIT1002_03829 0.64 -0.3 4,278,897 + MIT1002_03829 0.67 -2.9 4,278,905 - MIT1002_03829 0.68 -0.3 4,278,905 - MIT1002_03829 0.68 -0.5 4,278,922 - MIT1002_03829 0.70 -0.5 4,278,976 + MIT1002_03829 0.75 -2.3 4,279,021 + MIT1002_03829 0.80 -0.6 4,279,029 - MIT1002_03829 0.81 -2.0 4,279,056 + MIT1002_03829 0.84 -1.8 4,279,058 + MIT1002_03829 0.84 -1.0 4,279,096 - MIT1002_03829 0.88 -1.5 4,279,096 - MIT1002_03829 0.88 +0.0 4,279,104 + MIT1002_03829 0.89 -2.5 4,279,125 + -0.4 4,279,125 + -2.1 4,279,125 + -1.2 4,279,134 + -2.8 4,279,222 + -1.6 4,279,237 + -0.5 4,279,246 + +1.4
Or see this region's nucleotide sequence