Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03554

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 6
3,975,685	+				+1.8
3,975,768	+				+0.1
3,975,773	+				-0.5
3,975,773	+				+1.5
3,975,795	+				+1.1
3,975,805	+				+0.1
3,975,813	-		MIT1002_03553	0.10	-0.8
3,975,833	+		MIT1002_03553	0.13	+1.3
3,975,857	+		MIT1002_03553	0.15	+0.0
3,976,254	-		MIT1002_03553	0.60	-1.4
3,976,282	+		MIT1002_03553	0.63	+0.5
3,976,318	-		MIT1002_03553	0.67	+0.7
3,976,349	+		MIT1002_03553	0.71	-0.0
3,976,364	+		MIT1002_03553	0.72	+1.0
3,976,369	+		MIT1002_03553	0.73	+0.5
3,976,431	-		MIT1002_03553	0.80	+0.2
3,976,478	+		MIT1002_03553	0.85	+0.3
3,976,486	-		MIT1002_03553	0.86	+0.2
3,976,754	-		MIT1002_03554	0.14	-0.5
3,976,754	-		MIT1002_03554	0.14	-1.2
3,976,931	+		MIT1002_03554	0.41	-0.8
3,976,935	-		MIT1002_03554	0.41	+0.9
3,976,937	-		MIT1002_03554	0.41	+0.3
3,976,949	+		MIT1002_03554	0.43	-1.2
3,976,949	+		MIT1002_03554	0.43	+0.1
3,977,133	-		MIT1002_03554	0.71	-1.9
3,977,170	-		MIT1002_03554	0.76	-1.1
3,977,252	+		MIT1002_03554	0.88	-1.3
3,977,264	-				+0.3
3,977,303	+				-0.2
3,977,514	+				+0.6
3,977,514	+				+1.6
3,977,520	+				-1.6
3,977,528	-				+0.8
3,977,540	+				+0.4
3,977,540	+				-0.6
3,977,567	-				-0.7
3,977,621	-				+0.3
3,977,621	-				-1.3
3,977,625	+				+0.8
3,977,633	-				+0.2
3,977,647	-				+0.5
3,977,710	+				-0.5
3,977,853	+				-0.3
3,977,853	+				-0.9
3,977,861	-				-0.1
3,977,861	-				-1.3
3,977,878	+				+0.8
3,977,967	+				+0.1
3,977,987	+				+0.7
3,977,992	+				+3.5
3,977,997	+				+1.5
3,978,042	-				+1.8
3,978,056	+				+2.5
3,978,057	-				+0.1
3,978,064	-				-0.6
3,978,109	-		MIT1002_03555	0.12	+2.0
3,978,119	+		MIT1002_03555	0.12	+0.7
3,978,120	+		MIT1002_03555	0.12	-0.2
3,978,180	+		MIT1002_03555	0.15	+0.6
3,978,180	+		MIT1002_03555	0.15	+1.2
3,978,219	+		MIT1002_03555	0.16	-1.1
3,978,265	+		MIT1002_03555	0.18	-0.3