Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03210

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 6
3,578,195	-		MIT1002_03209	0.52	-0.2
3,578,209	+		MIT1002_03209	0.53	-0.8
3,578,209	+		MIT1002_03209	0.53	-0.1
3,578,219	+		MIT1002_03209	0.53	-1.0
3,578,311	+		MIT1002_03209	0.58	+0.7
3,578,319	-		MIT1002_03209	0.58	-0.6
3,578,330	+		MIT1002_03209	0.59	-0.3
3,578,373	+		MIT1002_03209	0.61	-0.1
3,578,411	-		MIT1002_03209	0.63	+0.2
3,578,411	-		MIT1002_03209	0.63	-1.1
3,578,418	+		MIT1002_03209	0.63	+0.3
3,578,586	+		MIT1002_03209	0.72	+0.1
3,578,707	+		MIT1002_03209	0.78	-0.6
3,578,735	-		MIT1002_03209	0.80	-0.3
3,578,742	+		MIT1002_03209	0.80	+0.3
3,578,758	+		MIT1002_03209	0.81	+0.3
3,578,819	+		MIT1002_03209	0.84	-1.0
3,578,900	+		MIT1002_03209	0.88	-0.5
3,578,900	+		MIT1002_03209	0.88	-1.1
3,578,908	-		MIT1002_03209	0.88	+0.7
3,578,908	-		MIT1002_03209	0.88	-0.6
3,578,908	-		MIT1002_03209	0.88	-2.0
3,578,946	+				-2.7
3,578,946	+				+1.7
3,579,266	+				-1.6
3,579,301	+				+0.0
3,579,405	+				+1.7
3,579,443	-				+0.2
3,579,448	-				-1.3
3,579,450	+				-0.0
3,579,488	+		MIT1002_03210	0.11	+0.9
3,579,515	-		MIT1002_03210	0.12	-0.6
3,579,520	+		MIT1002_03210	0.12	+0.4
3,579,527	+		MIT1002_03210	0.12	-0.8
3,579,535	-		MIT1002_03210	0.13	+1.8
3,579,547	+		MIT1002_03210	0.13	+0.1
3,579,585	-		MIT1002_03210	0.14	+3.2
3,579,595	+		MIT1002_03210	0.15	+0.3
3,579,644	+		MIT1002_03210	0.16	+0.3
3,579,671	-		MIT1002_03210	0.17	+0.7
3,579,802	+		MIT1002_03210	0.22	-0.5
3,579,818	+		MIT1002_03210	0.22	-0.3
3,579,832	-		MIT1002_03210	0.23	+0.4
3,579,836	-		MIT1002_03210	0.23	-0.3
3,579,857	-		MIT1002_03210	0.24	-0.8
3,579,894	-		MIT1002_03210	0.25	-1.1
3,579,898	+		MIT1002_03210	0.25	-0.9
3,579,945	+		MIT1002_03210	0.27	+1.2
3,579,988	+		MIT1002_03210	0.28	-0.2
3,579,996	-		MIT1002_03210	0.29	+0.6
3,580,034	-		MIT1002_03210	0.30	-1.2
3,580,083	+		MIT1002_03210	0.32	-0.1
3,580,134	-		MIT1002_03210	0.33	-0.6
3,580,134	-		MIT1002_03210	0.33	-0.4
3,580,149	-		MIT1002_03210	0.34	+1.0
3,580,149	-		MIT1002_03210	0.34	+2.2
3,580,243	+		MIT1002_03210	0.37	-1.1
3,580,243	+		MIT1002_03210	0.37	+1.6
3,580,245	+		MIT1002_03210	0.37	-0.1
3,580,245	+		MIT1002_03210	0.37	+0.2
3,580,245	+		MIT1002_03210	0.37	-0.8
3,580,245	+		MIT1002_03210	0.37	-1.6
3,580,245	+		MIT1002_03210	0.37	-2.1
3,580,245	+		MIT1002_03210	0.37	-1.6
3,580,245	+		MIT1002_03210	0.37	+1.1
3,580,251	-		MIT1002_03210	0.37	+0.3
3,580,265	-		MIT1002_03210	0.38	-0.7
3,580,304	-		MIT1002_03210	0.39	-0.1
3,580,304	-		MIT1002_03210	0.39	-2.6
3,580,312	+		MIT1002_03210	0.39	-0.4
3,580,318	+		MIT1002_03210	0.40	-1.5
3,580,362	+		MIT1002_03210	0.41	+3.0
3,580,532	+		MIT1002_03210	0.47	+0.3
3,580,538	+		MIT1002_03210	0.47	+1.9
3,580,538	+		MIT1002_03210	0.47	+1.5
3,580,540	-		MIT1002_03210	0.47	-0.1
3,580,599	+		MIT1002_03210	0.49	+1.0
3,580,753	+		MIT1002_03210	0.55	+0.8
3,580,946	+		MIT1002_03210	0.61	-0.5
3,581,006	+		MIT1002_03210	0.63	-2.3
3,581,006	+		MIT1002_03210	0.63	-0.8
3,581,014	-		MIT1002_03210	0.64	+0.5
3,581,098	-		MIT1002_03210	0.67	-0.3
3,581,111	+		MIT1002_03210	0.67	-0.1
3,581,137	+		MIT1002_03210	0.68	-1.5
3,581,179	-		MIT1002_03210	0.69	+0.0
3,581,227	-		MIT1002_03210	0.71	-1.1
3,581,232	-		MIT1002_03210	0.71	+0.4
3,581,232	-		MIT1002_03210	0.71	+1.0
3,581,249	-		MIT1002_03210	0.72	+1.7
3,581,278	-		MIT1002_03210	0.73	+1.3
3,581,336	+		MIT1002_03210	0.75	-0.3
3,581,470	-		MIT1002_03210	0.79	-1.3
3,581,484	+		MIT1002_03210	0.80	-0.6
3,581,489	+		MIT1002_03210	0.80	+0.2
3,581,497	-		MIT1002_03210	0.80	+1.1
3,581,497	-		MIT1002_03210	0.80	+0.4
3,581,505	+		MIT1002_03210	0.81	-0.4
3,581,603	-		MIT1002_03210	0.84	-0.9
3,581,617	-		MIT1002_03210	0.84	+0.8
3,581,747	-		MIT1002_03210	0.89	-1.7
3,581,863	-				-2.2
3,581,866	+				-0.2
3,581,918	-				-2.1
3,581,957	-				-0.5
3,581,962	-				+0.8
3,582,069	+				+1.7
3,582,069	+				-1.6
3,582,069	+				-1.4
3,582,077	-				+0.9
3,582,078	+				+1.0
3,582,141	+				-3.0
3,582,190	-				+1.4
3,582,284	+		MIT1002_03211	0.16	-0.1
3,582,294	-		MIT1002_03211	0.17	+0.6
3,582,324	+		MIT1002_03211	0.19	-2.5
3,582,332	-		MIT1002_03211	0.20	-2.0
3,582,332	-		MIT1002_03211	0.20	+1.0
3,582,332	-		MIT1002_03211	0.20	+0.4
3,582,354	-		MIT1002_03211	0.22	+1.7
3,582,394	+		MIT1002_03211	0.25	+2.3
3,582,397	-		MIT1002_03211	0.26	+1.8
3,582,408	+		MIT1002_03211	0.26	-1.3
3,582,424	-		MIT1002_03211	0.28	-0.8
3,582,437	+		MIT1002_03211	0.29	-0.4
3,582,474	+		MIT1002_03211	0.32	-0.5
3,582,482	-		MIT1002_03211	0.33	+0.2
3,582,491	-		MIT1002_03211	0.33	+0.3
3,582,493	+		MIT1002_03211	0.34	+0.3
3,582,501	-		MIT1002_03211	0.34	-2.3
3,582,506	-		MIT1002_03211	0.35	+0.4
3,582,581	-		MIT1002_03211	0.41	+0.2
3,582,707	+		MIT1002_03211	0.52	-0.8
3,582,738	+		MIT1002_03211	0.54	-2.7
3,582,806	-		MIT1002_03211	0.60	+0.1
3,582,817	-		MIT1002_03211	0.61	+0.4
3,582,851	-		MIT1002_03211	0.64	-1.3
3,582,869	+		MIT1002_03211	0.65	-1.2
3,582,877	-		MIT1002_03211	0.66	-0.5
3,582,886	+		MIT1002_03211	0.67	-1.1
3,582,894	-		MIT1002_03211	0.67	+0.3
3,582,894	-		MIT1002_03211	0.67	-0.9
3,582,947	-		MIT1002_03211	0.72	-0.1
3,582,961	-		MIT1002_03211	0.73	+0.5
3,582,961	-		MIT1002_03211	0.73	+0.8
3,582,978	+		MIT1002_03211	0.74	-0.3
3,582,978	+		MIT1002_03211	0.74	-1.2