Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03140

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 6
3,501,495	+		MIT1002_03139	0.80	-1.1
3,501,495	+		MIT1002_03139	0.80	-2.7
3,501,495	+		MIT1002_03139	0.80	-4.8
3,501,495	+		MIT1002_03139	0.80	-6.2
3,501,495	+		MIT1002_03139	0.80	-1.9
3,501,503	-		MIT1002_03139	0.80	-0.7
3,501,503	-		MIT1002_03139	0.80	-3.0
3,501,503	-		MIT1002_03139	0.80	-2.2
3,501,503	-		MIT1002_03139	0.80	+1.3
3,501,503	-		MIT1002_03139	0.80	-2.1
3,501,503	-		MIT1002_03139	0.80	-3.6
3,501,517	+		MIT1002_03139	0.80	-0.6
3,501,530	-		MIT1002_03139	0.81	-1.7
3,501,535	-		MIT1002_03139	0.81	-1.4
3,501,567	-		MIT1002_03139	0.82	-2.1
3,501,578	+		MIT1002_03139	0.82	+0.5
3,501,727	-		MIT1002_03139	0.85	+1.0
3,501,754	-		MIT1002_03139	0.86	-4.2
3,501,756	+		MIT1002_03139	0.86	-3.5
3,501,764	-		MIT1002_03139	0.86	-1.4
3,501,795	+		MIT1002_03139	0.87	-1.2
3,501,832	-		MIT1002_03139	0.88	-5.7
3,501,837	-		MIT1002_03139	0.88	-3.2
3,501,837	-		MIT1002_03139	0.88	-1.9
3,501,867	+		MIT1002_03139	0.88	-1.4
3,501,883	+		MIT1002_03139	0.89	-0.2
3,501,883	+		MIT1002_03139	0.89	-2.7
3,501,883	+		MIT1002_03139	0.89	-2.4
3,501,891	-		MIT1002_03139	0.89	-1.2
3,501,906	-		MIT1002_03139	0.89	-0.6
3,501,908	+		MIT1002_03139	0.89	-0.2
3,501,909	+		MIT1002_03139	0.89	-1.8
3,501,912	-		MIT1002_03139	0.89	-3.3
3,501,916	-		MIT1002_03139	0.89	-2.6
3,501,917	-		MIT1002_03139	0.89	-1.1
3,501,923	+		MIT1002_03139	0.90	-4.1
3,502,056	-				-3.0
3,502,141	-				-0.9
3,502,211	-				-3.4
3,502,304	-				-1.5
3,502,342	+				-1.4
3,502,384	+				-0.2
3,502,393	+				-0.8
3,502,393	-				-4.6
3,502,552	+		MIT1002_03140	0.11	+1.3
3,502,558	+		MIT1002_03140	0.11	-0.2
3,502,558	+		MIT1002_03140	0.11	-1.9
3,502,573	+		MIT1002_03140	0.12	-0.6
3,502,578	+		MIT1002_03140	0.12	-3.8
3,502,578	+		MIT1002_03140	0.12	-2.3
3,502,581	-		MIT1002_03140	0.13	+0.3
3,502,581	-		MIT1002_03140	0.13	-2.8
3,502,583	+		MIT1002_03140	0.13	-2.6
3,502,598	-		MIT1002_03140	0.14	+1.0
3,502,612	-		MIT1002_03140	0.15	-2.1
3,502,613	-		MIT1002_03140	0.15	-1.6
3,502,641	+		MIT1002_03140	0.17	-1.7
3,502,702	+		MIT1002_03140	0.21	-2.1
3,502,705	-		MIT1002_03140	0.21	-0.1
3,502,710	-		MIT1002_03140	0.22	-4.6
3,502,711	+		MIT1002_03140	0.22	-3.7
3,502,722	+		MIT1002_03140	0.23	-1.0
3,502,722	+		MIT1002_03140	0.23	-2.2
3,502,730	-		MIT1002_03140	0.23	+1.0
3,502,774	+		MIT1002_03140	0.26	-1.7
3,502,774	-		MIT1002_03140	0.26	-1.4
3,502,782	-		MIT1002_03140	0.27	-0.7
3,502,814	+		MIT1002_03140	0.29	-1.9
3,502,814	+		MIT1002_03140	0.29	-0.8
3,502,828	+		MIT1002_03140	0.30	-3.8
3,502,828	+		MIT1002_03140	0.30	-1.9
3,503,034	-		MIT1002_03140	0.45	-2.8
3,503,068	-		MIT1002_03140	0.47	-2.4
3,503,074	-		MIT1002_03140	0.47	-1.9
3,503,088	-		MIT1002_03140	0.48	-2.0
3,503,123	+		MIT1002_03140	0.51	-1.5
3,503,138	-		MIT1002_03140	0.52	-2.4
3,503,143	-		MIT1002_03140	0.52	-0.6
3,503,169	-		MIT1002_03140	0.54	-3.2
3,503,171	+		MIT1002_03140	0.54	-2.4
3,503,259	-		MIT1002_03140	0.60	-3.4
3,503,294	+		MIT1002_03140	0.63	+0.0
3,503,302	-		MIT1002_03140	0.63	-1.1
3,503,302	-		MIT1002_03140	0.63	-2.5
3,503,302	-		MIT1002_03140	0.63	+0.0
3,503,336	+		MIT1002_03140	0.66	-1.2
3,503,351	-		MIT1002_03140	0.67	-0.1
3,503,403	-		MIT1002_03140	0.71	-4.2
3,503,546	+		MIT1002_03140	0.81	-4.8
3,503,553	+		MIT1002_03140	0.81	-0.5
3,503,561	-		MIT1002_03140	0.82	-4.0
3,503,613	-		MIT1002_03140	0.85	-3.4
3,503,623	-		MIT1002_03140	0.86	-3.0
3,503,637	+		MIT1002_03140	0.87	-2.2
3,503,737	+				-5.0
3,503,739	+				+0.0
3,503,742	+				-1.4
3,503,756	-				-2.2
3,503,756	-				-1.7
3,503,776	+				-3.5
3,503,784	-				-2.1
3,503,805	+				-2.4
3,503,820	-				-0.1
3,503,841	-				-1.6
3,503,891	+				-1.5
3,503,925	-				-1.1
3,503,937	+				-1.0
3,503,946	-				+0.6
3,503,946	-				-2.6
3,503,984	+				+1.0
3,503,984	+				-1.8
3,503,992	-				+0.8
3,504,115	-		MIT1002_03141	0.21	+1.5
3,504,162	+		MIT1002_03141	0.32	+0.2
3,504,178	+		MIT1002_03141	0.35	-0.4
3,504,215	+		MIT1002_03141	0.43	+1.3
3,504,286	-		MIT1002_03141	0.59	-1.1
3,504,396	-		MIT1002_03141	0.84	+0.0
3,504,404	+		MIT1002_03141	0.85	-2.1
3,504,405	-		MIT1002_03141	0.86	+0.9
3,504,794	+		MIT1002_03142	0.20	-1.1
3,504,808	+		MIT1002_03142	0.22	-0.7