Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03139

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 6
3,496,940	+		MIT1002_03138	0.66	+0.2
3,496,940	+		MIT1002_03138	0.66	-0.0
3,496,945	+		MIT1002_03138	0.66	-0.2
3,496,953	-		MIT1002_03138	0.67	-1.1
3,497,012	+		MIT1002_03138	0.73	+0.3
3,497,033	-		MIT1002_03138	0.76	+2.2
3,497,075	+		MIT1002_03138	0.80	-1.0
3,497,083	-		MIT1002_03138	0.81	+1.6
3,497,102	-		MIT1002_03138	0.83	+0.4
3,497,158	+		MIT1002_03138	0.89	-0.8
3,497,173	+				+0.5
3,497,270	-				+1.3
3,497,272	-				+0.3
3,497,283	-				-1.0
3,497,335	-				+0.5
3,497,386	-				+0.0
3,497,391	-				-1.4
3,497,476	-				-1.1
3,497,672	+				+1.5
3,497,672	+				-0.7
3,497,673	+				-1.0
3,497,673	+				-2.7
3,497,680	-				-1.5
3,497,680	-				-0.9
3,497,680	-				+0.5
3,497,680	-				-2.4
3,497,680	-				+1.8
3,497,681	-				-1.4
3,497,681	-				-1.9
3,497,681	-				+0.2
3,497,681	-				-0.7
3,497,731	+				+2.0
3,497,808	+				-1.1
3,497,868	-				-3.2
3,497,882	+				-2.4
3,497,882	+				-1.8
3,497,883	+				-4.1
3,497,896	-				-0.7
3,497,962	+				-3.5
3,498,022	-				+0.5
3,498,191	+				+0.8
3,498,204	+				-2.0
3,498,293	+				-4.1
3,498,293	+				-2.5
3,498,293	+				-1.6
3,498,298	+				-2.3
3,498,301	-				-4.7
3,498,301	-				-1.2
3,498,306	-				+0.0
3,498,495	-		MIT1002_03139	0.13	-4.0
3,498,495	-		MIT1002_03139	0.13	-3.2
3,498,576	+		MIT1002_03139	0.15	-2.2
3,498,592	+		MIT1002_03139	0.15	+0.0
3,498,626	+		MIT1002_03139	0.16	-4.0
3,498,662	-		MIT1002_03139	0.17	-0.7
3,498,699	-		MIT1002_03139	0.17	-4.0
3,498,755	+		MIT1002_03139	0.19	-3.5
3,498,819	-		MIT1002_03139	0.20	-4.3
3,498,858	+		MIT1002_03139	0.21	-2.8
3,498,929	+		MIT1002_03139	0.23	-2.0
3,498,967	+		MIT1002_03139	0.23	+0.5
3,498,977	-		MIT1002_03139	0.24	-1.3
3,498,996	-		MIT1002_03139	0.24	-2.5
3,498,998	-		MIT1002_03139	0.24	-0.7
3,499,028	+		MIT1002_03139	0.25	-1.5
3,499,068	-		MIT1002_03139	0.26	+0.2
3,499,094	+		MIT1002_03139	0.26	-2.1
3,499,125	+		MIT1002_03139	0.27	-2.7
3,499,133	-		MIT1002_03139	0.27	-2.8
3,499,133	-		MIT1002_03139	0.27	-3.3
3,499,133	-		MIT1002_03139	0.27	-3.6
3,499,143	-		MIT1002_03139	0.27	-3.0
3,499,169	+		MIT1002_03139	0.28	-1.4
3,499,170	+		MIT1002_03139	0.28	-0.1
3,499,308	+		MIT1002_03139	0.31	-2.8
3,499,310	-		MIT1002_03139	0.31	-2.1
3,499,430	-		MIT1002_03139	0.34	-3.2
3,499,461	+		MIT1002_03139	0.34	-2.0
3,499,525	-		MIT1002_03139	0.36	-3.5
3,499,528	-		MIT1002_03139	0.36	-0.7
3,499,591	+		MIT1002_03139	0.37	-2.5
3,499,596	+		MIT1002_03139	0.37	-2.3
3,499,599	-		MIT1002_03139	0.38	-3.2
3,499,601	+		MIT1002_03139	0.38	-5.1
3,499,604	-		MIT1002_03139	0.38	-3.6
3,499,604	-		MIT1002_03139	0.38	-1.9
3,499,604	-		MIT1002_03139	0.38	-1.4
3,499,641	+		MIT1002_03139	0.38	-1.9
3,499,833	-		MIT1002_03139	0.43	-3.2
3,499,892	+		MIT1002_03139	0.44	-2.7
3,499,898	+		MIT1002_03139	0.44	-4.0
3,499,915	+		MIT1002_03139	0.45	-0.7
3,499,923	-		MIT1002_03139	0.45	-3.9
3,500,039	-		MIT1002_03139	0.47	-2.3
3,500,095	+		MIT1002_03139	0.49	-0.4
3,500,105	+		MIT1002_03139	0.49	-3.5
3,500,105	+		MIT1002_03139	0.49	-1.2
3,500,105	+		MIT1002_03139	0.49	-3.5
3,500,113	-		MIT1002_03139	0.49	-2.1
3,500,113	-		MIT1002_03139	0.49	-1.1
3,500,113	-		MIT1002_03139	0.49	-1.4
3,500,115	+		MIT1002_03139	0.49	+1.0
3,500,115	+		MIT1002_03139	0.49	-3.3
3,500,123	-		MIT1002_03139	0.49	-3.4
3,500,123	-		MIT1002_03139	0.49	-1.3
3,500,123	-		MIT1002_03139	0.49	-3.0
3,500,157	+		MIT1002_03139	0.50	-4.2
3,500,231	+		MIT1002_03139	0.52	+0.8
3,500,299	-		MIT1002_03139	0.53	-0.2
3,500,315	-		MIT1002_03139	0.54	+0.2
3,500,397	+		MIT1002_03139	0.55	-3.7
3,500,397	+		MIT1002_03139	0.55	-3.2
3,500,405	-		MIT1002_03139	0.56	-1.4
3,500,502	-		MIT1002_03139	0.58	-1.9
3,500,539	-		MIT1002_03139	0.59	-2.7
3,500,591	-		MIT1002_03139	0.60	-2.1
3,500,618	-		MIT1002_03139	0.60	-3.7
3,500,624	+		MIT1002_03139	0.60	-2.4
3,500,629	+		MIT1002_03139	0.61	-1.4
3,500,729	+		MIT1002_03139	0.63	-2.7
3,500,729	+		MIT1002_03139	0.63	-1.6
3,500,737	-		MIT1002_03139	0.63	-2.6
3,500,739	+		MIT1002_03139	0.63	-2.7
3,500,793	+		MIT1002_03139	0.64	-3.5
3,500,810	+		MIT1002_03139	0.65	-3.7
3,500,810	+		MIT1002_03139	0.65	-0.2
3,500,892	+		MIT1002_03139	0.66	-0.4
3,500,892	+		MIT1002_03139	0.66	-2.8
3,500,900	-		MIT1002_03139	0.67	-2.2
3,500,946	-		MIT1002_03139	0.68	-2.9
3,500,956	-		MIT1002_03139	0.68	-1.2
3,500,965	+		MIT1002_03139	0.68	-3.1
3,500,982	+		MIT1002_03139	0.68	-6.9
3,500,983	-		MIT1002_03139	0.69	-1.7
3,501,014	-		MIT1002_03139	0.69	-0.5
3,501,017	+		MIT1002_03139	0.69	+1.0
3,501,017	+		MIT1002_03139	0.69	-3.9
3,501,025	-		MIT1002_03139	0.69	-3.1
3,501,151	+		MIT1002_03139	0.72	-4.4
3,501,151	+		MIT1002_03139	0.72	-3.5
3,501,151	+		MIT1002_03139	0.72	-6.8
3,501,159	-		MIT1002_03139	0.72	+0.0
3,501,159	-		MIT1002_03139	0.72	-0.5
3,501,159	-		MIT1002_03139	0.72	-2.1
3,501,208	+		MIT1002_03139	0.74	-4.0
3,501,220	+		MIT1002_03139	0.74	-2.5
3,501,228	-		MIT1002_03139	0.74	-2.7
3,501,272	+		MIT1002_03139	0.75	-1.4
3,501,324	+		MIT1002_03139	0.76	-1.9
3,501,331	+		MIT1002_03139	0.76	-1.6
3,501,495	+		MIT1002_03139	0.80	-1.1
3,501,495	+		MIT1002_03139	0.80	-2.7
3,501,495	+		MIT1002_03139	0.80	-4.8
3,501,495	+		MIT1002_03139	0.80	-6.2
3,501,495	+		MIT1002_03139	0.80	-1.9
3,501,503	-		MIT1002_03139	0.80	-0.7
3,501,503	-		MIT1002_03139	0.80	-3.0
3,501,503	-		MIT1002_03139	0.80	-2.2
3,501,503	-		MIT1002_03139	0.80	+1.3
3,501,503	-		MIT1002_03139	0.80	-2.1
3,501,503	-		MIT1002_03139	0.80	-3.6
3,501,517	+		MIT1002_03139	0.80	-0.6
3,501,530	-		MIT1002_03139	0.81	-1.7
3,501,535	-		MIT1002_03139	0.81	-1.4
3,501,567	-		MIT1002_03139	0.82	-2.1
3,501,578	+		MIT1002_03139	0.82	+0.5
3,501,727	-		MIT1002_03139	0.85	+1.0
3,501,754	-		MIT1002_03139	0.86	-4.2
3,501,756	+		MIT1002_03139	0.86	-3.5
3,501,764	-		MIT1002_03139	0.86	-1.4
3,501,795	+		MIT1002_03139	0.87	-1.2
3,501,832	-		MIT1002_03139	0.88	-5.7
3,501,837	-		MIT1002_03139	0.88	-3.2
3,501,837	-		MIT1002_03139	0.88	-1.9
3,501,867	+		MIT1002_03139	0.88	-1.4
3,501,883	+		MIT1002_03139	0.89	-0.2
3,501,883	+		MIT1002_03139	0.89	-2.7
3,501,883	+		MIT1002_03139	0.89	-2.4
3,501,891	-		MIT1002_03139	0.89	-1.2
3,501,906	-		MIT1002_03139	0.89	-0.6
3,501,908	+		MIT1002_03139	0.89	-0.2
3,501,909	+		MIT1002_03139	0.89	-1.8
3,501,912	-		MIT1002_03139	0.89	-3.3
3,501,916	-		MIT1002_03139	0.89	-2.6
3,501,917	-		MIT1002_03139	0.89	-1.1
3,501,923	+		MIT1002_03139	0.90	-4.1
3,502,056	-				-3.0
3,502,141	-				-0.9
3,502,211	-				-3.4
3,502,304	-				-1.5
3,502,342	+				-1.4
3,502,384	+				-0.2
3,502,393	+				-0.8
3,502,393	-				-4.6
3,502,552	+		MIT1002_03140	0.11	+1.3
3,502,558	+		MIT1002_03140	0.11	-0.2
3,502,558	+		MIT1002_03140	0.11	-1.9
3,502,573	+		MIT1002_03140	0.12	-0.6
3,502,578	+		MIT1002_03140	0.12	-3.8
3,502,578	+		MIT1002_03140	0.12	-2.3
3,502,581	-		MIT1002_03140	0.13	+0.3
3,502,581	-		MIT1002_03140	0.13	-2.8
3,502,583	+		MIT1002_03140	0.13	-2.6
3,502,598	-		MIT1002_03140	0.14	+1.0
3,502,612	-		MIT1002_03140	0.15	-2.1
3,502,613	-		MIT1002_03140	0.15	-1.6
3,502,641	+		MIT1002_03140	0.17	-1.7
3,502,702	+		MIT1002_03140	0.21	-2.1
3,502,705	-		MIT1002_03140	0.21	-0.1
3,502,710	-		MIT1002_03140	0.22	-4.6
3,502,711	+		MIT1002_03140	0.22	-3.7
3,502,722	+		MIT1002_03140	0.23	-1.0
3,502,722	+		MIT1002_03140	0.23	-2.2
3,502,730	-		MIT1002_03140	0.23	+1.0
3,502,774	+		MIT1002_03140	0.26	-1.7
3,502,774	-		MIT1002_03140	0.26	-1.4
3,502,782	-		MIT1002_03140	0.27	-0.7
3,502,814	+		MIT1002_03140	0.29	-1.9
3,502,814	+		MIT1002_03140	0.29	-0.8
3,502,828	+		MIT1002_03140	0.30	-3.8
3,502,828	+		MIT1002_03140	0.30	-1.9
3,503,034	-		MIT1002_03140	0.45	-2.8
3,503,068	-		MIT1002_03140	0.47	-2.4
3,503,074	-		MIT1002_03140	0.47	-1.9
3,503,088	-		MIT1002_03140	0.48	-2.0
3,503,123	+		MIT1002_03140	0.51	-1.5
3,503,138	-		MIT1002_03140	0.52	-2.4
3,503,143	-		MIT1002_03140	0.52	-0.6
3,503,169	-		MIT1002_03140	0.54	-3.2
3,503,171	+		MIT1002_03140	0.54	-2.4
3,503,259	-		MIT1002_03140	0.60	-3.4
3,503,294	+		MIT1002_03140	0.63	+0.0
3,503,302	-		MIT1002_03140	0.63	-1.1
3,503,302	-		MIT1002_03140	0.63	-2.5
3,503,302	-		MIT1002_03140	0.63	+0.0
3,503,336	+		MIT1002_03140	0.66	-1.2
3,503,351	-		MIT1002_03140	0.67	-0.1