Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03086

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 6
3,437,133	+		MIT1002_03085	0.30	-1.3
3,437,181	-		MIT1002_03085	0.35	-5.1
3,437,197	-		MIT1002_03085	0.37	-0.5
3,437,199	+		MIT1002_03085	0.37	-1.2
3,437,216	-		MIT1002_03085	0.39	-0.5
3,437,236	+		MIT1002_03085	0.41	+1.4
3,437,258	+		MIT1002_03085	0.43	-1.5
3,437,266	-		MIT1002_03085	0.44	-0.6
3,437,266	-		MIT1002_03085	0.44	-0.9
3,437,266	-		MIT1002_03085	0.44	-3.5
3,437,266	-		MIT1002_03085	0.44	-1.1
3,437,317	-		MIT1002_03085	0.49	-2.6
3,437,531	-		MIT1002_03085	0.72	-2.0
3,437,540	-		MIT1002_03085	0.73	-2.2
3,437,608	-		MIT1002_03085	0.80	-1.3
3,437,705	-				-3.0
3,437,734	-				-0.1
3,437,932	+				-2.2
3,437,966	-				-0.4
3,438,017	+				-2.8
3,438,033	-				-1.2
3,438,068	+				-0.2
3,438,179	+				-0.4
3,438,234	-		MIT1002_03086	0.11	-1.4
3,438,272	+		MIT1002_03086	0.12	-1.2
3,438,280	-		MIT1002_03086	0.13	-2.4
3,438,294	+		MIT1002_03086	0.13	-3.2
3,438,294	+		MIT1002_03086	0.13	-3.2
3,438,302	-		MIT1002_03086	0.14	-3.3
3,438,381	-		MIT1002_03086	0.17	-1.7
3,438,405	+		MIT1002_03086	0.18	-0.8
3,438,413	-		MIT1002_03086	0.18	-3.5
3,438,475	+		MIT1002_03086	0.21	-0.8
3,438,483	+		MIT1002_03086	0.21	-4.9
3,438,485	+		MIT1002_03086	0.21	-1.7
3,438,538	-		MIT1002_03086	0.23	-1.1
3,438,540	+		MIT1002_03086	0.23	-0.1
3,438,548	-		MIT1002_03086	0.24	-4.5
3,438,596	-		MIT1002_03086	0.26	-4.1
3,438,596	-		MIT1002_03086	0.26	-3.0
3,438,601	-		MIT1002_03086	0.26	-1.0
3,438,629	-		MIT1002_03086	0.27	-4.3
3,438,646	+		MIT1002_03086	0.28	-2.3
3,438,656	+		MIT1002_03086	0.28	-0.2
3,438,664	-		MIT1002_03086	0.28	-2.7
3,438,664	-		MIT1002_03086	0.28	-2.9
3,438,664	-		MIT1002_03086	0.28	-2.8
3,438,672	-		MIT1002_03086	0.29	-1.0
3,438,679	-		MIT1002_03086	0.29	-2.6
3,438,908	+		MIT1002_03086	0.38	-2.1
3,438,935	-		MIT1002_03086	0.39	-1.4
3,438,947	-		MIT1002_03086	0.40	-1.2
3,438,960	-		MIT1002_03086	0.40	-1.2
3,439,000	+		MIT1002_03086	0.42	-4.4
3,439,003	-		MIT1002_03086	0.42	-1.0
3,439,124	+		MIT1002_03086	0.47	-3.1
3,439,127	+		MIT1002_03086	0.47	-2.8
3,439,134	+		MIT1002_03086	0.47	-2.1
3,439,134	+		MIT1002_03086	0.47	-1.4
3,439,134	+		MIT1002_03086	0.47	-2.5
3,439,142	-		MIT1002_03086	0.48	-1.7
3,439,147	+		MIT1002_03086	0.48	-0.1
3,439,217	+		MIT1002_03086	0.51	-2.7
3,439,324	-		MIT1002_03086	0.55	-3.1
3,439,429	-		MIT1002_03086	0.59	-4.2
3,439,454	-		MIT1002_03086	0.60	-0.3
3,439,529	-		MIT1002_03086	0.63	-3.6
3,439,529	-		MIT1002_03086	0.63	-1.5
3,439,567	+		MIT1002_03086	0.65	-0.6
3,439,571	+		MIT1002_03086	0.65	-2.8
3,439,571	+		MIT1002_03086	0.65	-0.3
3,439,731	-		MIT1002_03086	0.72	-3.9
3,439,743	+		MIT1002_03086	0.72	-1.6
3,439,743	+		MIT1002_03086	0.72	-2.4
3,439,751	-		MIT1002_03086	0.72	-0.6
3,439,751	-		MIT1002_03086	0.72	-1.3
3,439,751	-		MIT1002_03086	0.72	-2.1
3,439,808	+		MIT1002_03086	0.75	-0.5
3,439,912	-		MIT1002_03086	0.79	-7.7
3,439,912	-		MIT1002_03086	0.79	-3.0
3,439,965	+		MIT1002_03086	0.81	-3.1
3,439,973	-		MIT1002_03086	0.81	+1.0
3,439,975	+		MIT1002_03086	0.81	-3.1
3,440,054	+		MIT1002_03086	0.85	-1.4
3,440,062	-		MIT1002_03086	0.85	-1.5
3,440,098	-		MIT1002_03086	0.86	-2.4
3,440,098	-		MIT1002_03086	0.86	-2.0
3,440,098	-		MIT1002_03086	0.86	-4.8
3,440,105	+		MIT1002_03086	0.87	-0.2
3,440,113	-		MIT1002_03086	0.87	+0.6
3,440,134	+		MIT1002_03086	0.88	+0.8
3,440,146	+		MIT1002_03086	0.88	+0.4
3,440,174	+		MIT1002_03086	0.89	+1.0
3,440,310	+				-2.2
3,440,318	-				-2.8
3,440,318	-				-1.4
3,440,441	+				-1.2
3,440,441	+				-1.3
3,440,446	+				-2.9
3,440,496	-				+0.3
3,440,510	-				-1.2
3,440,566	+				-3.1
3,440,590	-				-2.3
3,440,664	+				+1.4
3,440,750	+				+1.0
3,440,758	-				-0.6
3,440,820	+				+0.1
3,440,850	-				-0.8
3,440,852	+				-0.4
3,440,872	+				-1.5
3,440,872	+				-0.2
3,440,880	-				+1.4
3,440,880	-				+0.0
3,440,880	-				+2.6
3,440,880	-				-2.0
3,440,885	-				+2.1
3,440,885	-				-0.8
3,440,893	+				+0.6
3,440,902	-				-0.8
3,440,904	+				+1.3
3,440,908	+				+0.0
3,440,914	-				-0.3
3,440,916	-				-0.1
3,440,965	-				+0.5
3,440,977	-				-1.1
3,440,984	-				+1.4
3,440,984	-				+0.3
3,441,020	-				-0.1
3,441,036	+				-2.4
3,441,046	-				-0.0
3,441,102	+		MIT1002_03087	0.11	-0.0
3,441,110	-		MIT1002_03087	0.12	-1.4
3,441,128	-		MIT1002_03087	0.12	+0.5
3,441,172	+		MIT1002_03087	0.14	+0.1
3,441,172	+		MIT1002_03087	0.14	+0.4
3,441,187	+		MIT1002_03087	0.15	-0.9
3,441,200	-		MIT1002_03087	0.15	-0.7
3,441,337	-		MIT1002_03087	0.21	-2.0
3,441,346	-		MIT1002_03087	0.21	+0.0
3,441,353	-		MIT1002_03087	0.21	+0.0
3,441,398	+		MIT1002_03087	0.23	-0.9
3,441,403	+		MIT1002_03087	0.23	+1.1