Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03026

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_03025 and MIT1002_03026 overlap by 8 nucleotidesMIT1002_03026 and MIT1002_03027 overlap by 4 nucleotides MIT1002_03025: MIT1002_03025 - UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase, at 3,370,467 to 3,371,585 _03025 MIT1002_03026: MIT1002_03026 - Cell division protein FtsW, at 3,371,578 to 3,373,002 _03026 MIT1002_03027: MIT1002_03027 - UDP-N-acetylmuramoylalanine--D-glutamate ligase, at 3,372,999 to 3,374,516 _03027 Position (kb) 3371 3372 3373 3374Strain fitness (log2 ratio) -2 -1 0 1 2at 3371.621 kb on - strandat 3371.803 kb on - strand, within MIT1002_03026at 3371.803 kb on - strand, within MIT1002_03026

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 6
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3,371,621 - +1.8
3,371,803 - MIT1002_03026 0.16 -2.3
3,371,803 - MIT1002_03026 0.16 -0.7

Or see this region's nucleotide sequence