Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_02919 and MIT1002_02920 are separated by 316 nucleotides MIT1002_02920 and MIT1002_02921 are separated by 17 nucleotides MIT1002_02921 and MIT1002_02922 are separated by 252 nucleotides
MIT1002_02919: MIT1002_02919 - Putative acyl-CoA dehydrogenase AidB, at 3,243,763 to 3,245,445
_02919
MIT1002_02920: MIT1002_02920 - hypothetical protein, at 3,245,762 to 3,246,313
_02920
MIT1002_02921: MIT1002_02921 - Gluconolactonase, at 3,246,331 to 3,247,392
_02921
MIT1002_02922: MIT1002_02922 - hypothetical protein, at 3,247,645 to 3,248,220
_02922
Position (kb) 3246
3247
3248 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 3245.331 kb on - strand at 3245.387 kb on + strand at 3245.395 kb on - strand at 3245.395 kb on - strand at 3245.686 kb on + strand at 3245.702 kb on - strand at 3245.838 kb on + strand, within MIT1002_02920 at 3245.901 kb on - strand, within MIT1002_02920 at 3245.963 kb on - strand, within MIT1002_02920 at 3245.963 kb on - strand, within MIT1002_02920 at 3245.987 kb on - strand, within MIT1002_02920 at 3245.987 kb on - strand, within MIT1002_02920 at 3246.005 kb on + strand, within MIT1002_02920 at 3246.040 kb on + strand, within MIT1002_02920 at 3246.061 kb on - strand, within MIT1002_02920 at 3246.074 kb on - strand, within MIT1002_02920 at 3246.111 kb on - strand, within MIT1002_02920 at 3246.112 kb on + strand, within MIT1002_02920 at 3246.176 kb on + strand, within MIT1002_02920 at 3246.183 kb on + strand, within MIT1002_02920 at 3246.203 kb on + strand, within MIT1002_02920 at 3246.231 kb on + strand, within MIT1002_02920 at 3246.275 kb on + strand at 3246.350 kb on + strand at 3246.350 kb on + strand at 3246.350 kb on + strand at 3246.350 kb on + strand at 3246.350 kb on + strand at 3246.350 kb on + strand at 3246.350 kb on + strand at 3246.350 kb on + strand at 3246.350 kb on + strand at 3246.350 kb on + strand at 3246.350 kb on + strand at 3246.350 kb on + strand at 3246.350 kb on + strand at 3246.350 kb on + strand at 3246.350 kb on + strand at 3246.350 kb on + strand at 3246.350 kb on + strand at 3246.350 kb on + strand at 3246.350 kb on + strand at 3246.350 kb on + strand at 3246.353 kb on - strand at 3246.358 kb on - strand at 3246.358 kb on - strand at 3246.358 kb on - strand at 3246.358 kb on - strand at 3246.358 kb on - strand at 3246.358 kb on - strand at 3246.358 kb on - strand at 3246.358 kb on - strand at 3246.358 kb on - strand at 3246.358 kb on - strand at 3246.358 kb on - strand at 3246.358 kb on - strand at 3246.358 kb on - strand at 3246.358 kb on - strand at 3246.358 kb on - strand at 3246.358 kb on - strand at 3246.360 kb on - strand at 3246.360 kb on - strand at 3246.360 kb on - strand at 3246.438 kb on + strand, within MIT1002_02921 at 3246.438 kb on + strand, within MIT1002_02921 at 3246.438 kb on - strand, within MIT1002_02921 at 3246.460 kb on - strand, within MIT1002_02921 at 3246.460 kb on - strand, within MIT1002_02921 at 3246.462 kb on + strand, within MIT1002_02921 at 3246.474 kb on + strand, within MIT1002_02921 at 3246.482 kb on - strand, within MIT1002_02921 at 3246.489 kb on + strand, within MIT1002_02921 at 3246.489 kb on + strand, within MIT1002_02921 at 3246.489 kb on + strand, within MIT1002_02921 at 3246.489 kb on + strand, within MIT1002_02921 at 3246.489 kb on + strand, within MIT1002_02921 at 3246.489 kb on + strand, within MIT1002_02921 at 3246.489 kb on + strand, within MIT1002_02921 at 3246.489 kb on + strand, within MIT1002_02921 at 3246.489 kb on + strand, within MIT1002_02921 at 3246.489 kb on + strand, within MIT1002_02921 at 3246.489 kb on + strand, within MIT1002_02921 at 3246.489 kb on + strand, within MIT1002_02921 at 3246.489 kb on + strand, within MIT1002_02921 at 3246.489 kb on + strand, within MIT1002_02921 at 3246.489 kb on + strand, within MIT1002_02921 at 3246.489 kb on + strand, within MIT1002_02921 at 3246.497 kb on - strand, within MIT1002_02921 at 3246.497 kb on - strand, within MIT1002_02921 at 3246.497 kb on - strand, within MIT1002_02921 at 3246.497 kb on - strand, within MIT1002_02921 at 3246.497 kb on - strand, within MIT1002_02921 at 3246.497 kb on - strand, within MIT1002_02921 at 3246.497 kb on - strand, within MIT1002_02921 at 3246.497 kb on - strand, within MIT1002_02921 at 3246.497 kb on - strand, within MIT1002_02921 at 3246.497 kb on - strand, within MIT1002_02921 at 3246.497 kb on - strand, within MIT1002_02921 at 3246.497 kb on - strand, within MIT1002_02921 at 3246.508 kb on + strand, within MIT1002_02921 at 3246.516 kb on - strand, within MIT1002_02921 at 3246.519 kb on - strand, within MIT1002_02921 at 3246.616 kb on + strand, within MIT1002_02921 at 3246.647 kb on + strand, within MIT1002_02921 at 3246.735 kb on - strand, within MIT1002_02921 at 3246.748 kb on + strand, within MIT1002_02921 at 3246.757 kb on - strand, within MIT1002_02921 at 3246.757 kb on - strand, within MIT1002_02921 at 3246.762 kb on - strand, within MIT1002_02921 at 3246.764 kb on - strand, within MIT1002_02921 at 3246.791 kb on + strand, within MIT1002_02921 at 3246.835 kb on + strand, within MIT1002_02921 at 3246.843 kb on + strand, within MIT1002_02921 at 3246.848 kb on + strand, within MIT1002_02921 at 3246.852 kb on - strand, within MIT1002_02921 at 3246.921 kb on + strand, within MIT1002_02921 at 3246.956 kb on - strand, within MIT1002_02921 at 3247.016 kb on + strand, within MIT1002_02921 at 3247.016 kb on + strand, within MIT1002_02921 at 3247.016 kb on + strand, within MIT1002_02921 at 3247.016 kb on + strand, within MIT1002_02921 at 3247.016 kb on + strand, within MIT1002_02921 at 3247.024 kb on - strand, within MIT1002_02921 at 3247.024 kb on - strand, within MIT1002_02921 at 3247.024 kb on - strand, within MIT1002_02921 at 3247.024 kb on - strand, within MIT1002_02921 at 3247.024 kb on - strand, within MIT1002_02921 at 3247.051 kb on + strand, within MIT1002_02921 at 3247.061 kb on - strand, within MIT1002_02921 at 3247.149 kb on - strand, within MIT1002_02921 at 3247.182 kb on - strand, within MIT1002_02921 at 3247.182 kb on - strand, within MIT1002_02921 at 3247.238 kb on + strand, within MIT1002_02921 at 3247.271 kb on + strand, within MIT1002_02921 at 3247.271 kb on + strand, within MIT1002_02921 at 3247.279 kb on - strand, within MIT1002_02921 at 3247.279 kb on - strand, within MIT1002_02921 at 3247.388 kb on - strand at 3247.395 kb on + strand at 3247.402 kb on + strand at 3247.423 kb on + strand at 3247.423 kb on + strand at 3247.431 kb on - strand at 3247.431 kb on - strand at 3247.435 kb on + strand at 3247.443 kb on - strand at 3247.482 kb on + strand at 3247.482 kb on + strand at 3247.490 kb on - strand at 3247.512 kb on - strand at 3247.522 kb on + strand at 3247.564 kb on + strand at 3247.608 kb on - strand at 3247.719 kb on - strand, within MIT1002_02922 at 3247.743 kb on + strand, within MIT1002_02922 at 3247.757 kb on - strand, within MIT1002_02922 at 3247.813 kb on + strand, within MIT1002_02922 at 3247.813 kb on + strand, within MIT1002_02922 at 3247.813 kb on + strand, within MIT1002_02922 at 3247.813 kb on + strand, within MIT1002_02922 at 3247.813 kb on + strand, within MIT1002_02922 at 3247.829 kb on + strand, within MIT1002_02922 at 3247.829 kb on + strand, within MIT1002_02922 at 3247.898 kb on + strand, within MIT1002_02922 at 3247.906 kb on - strand, within MIT1002_02922 at 3247.906 kb on - strand, within MIT1002_02922 at 3247.946 kb on + strand, within MIT1002_02922 at 3247.981 kb on - strand, within MIT1002_02922 at 3247.981 kb on - strand, within MIT1002_02922 at 3247.988 kb on - strand, within MIT1002_02922 at 3248.094 kb on + strand, within MIT1002_02922 at 3248.097 kb on - strand, within MIT1002_02922 at 3248.127 kb on + strand, within MIT1002_02922 at 3248.135 kb on - strand, within MIT1002_02922 at 3248.220 kb on + strand at 3248.220 kb on + strand at 3248.227 kb on - strand at 3248.243 kb on + strand at 3248.273 kb on + strand at 3248.353 kb on + strand at 3248.353 kb on + strand at 3248.377 kb on + strand at 3248.377 kb on + strand at 3248.385 kb on - strand at 3248.385 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 6 remove 3,245,331 - -0.3 3,245,387 + -0.4 3,245,395 - -0.6 3,245,395 - +0.8 3,245,686 + -1.2 3,245,702 - -0.3 3,245,838 + MIT1002_02920 0.14 +0.1 3,245,901 - MIT1002_02920 0.25 -1.4 3,245,963 - MIT1002_02920 0.36 +0.1 3,245,963 - MIT1002_02920 0.36 +0.9 3,245,987 - MIT1002_02920 0.41 -1.5 3,245,987 - MIT1002_02920 0.41 +3.1 3,246,005 + MIT1002_02920 0.44 -0.4 3,246,040 + MIT1002_02920 0.50 +0.7 3,246,061 - MIT1002_02920 0.54 +0.6 3,246,074 - MIT1002_02920 0.57 -2.0 3,246,111 - MIT1002_02920 0.63 +0.1 3,246,112 + MIT1002_02920 0.63 -1.0 3,246,176 + MIT1002_02920 0.75 -1.4 3,246,183 + MIT1002_02920 0.76 -1.2 3,246,203 + MIT1002_02920 0.80 +0.6 3,246,231 + MIT1002_02920 0.85 +0.7 3,246,275 + -1.3 3,246,350 + -0.2 3,246,350 + -0.1 3,246,350 + +0.5 3,246,350 + +0.5 3,246,350 + +0.3 3,246,350 + -1.5 3,246,350 + +0.4 3,246,350 + +0.9 3,246,350 + -0.1 3,246,350 + -0.8 3,246,350 + +0.1 3,246,350 + +1.9 3,246,350 + +0.3 3,246,350 + -1.0 3,246,350 + +0.7 3,246,350 + +0.8 3,246,350 + +1.7 3,246,350 + +0.4 3,246,350 + +0.4 3,246,350 + +0.8 3,246,353 - -0.1 3,246,358 - -0.1 3,246,358 - +0.6 3,246,358 - +0.1 3,246,358 - -1.8 3,246,358 - +1.4 3,246,358 - -0.8 3,246,358 - +1.2 3,246,358 - +0.2 3,246,358 - -0.5 3,246,358 - -0.2 3,246,358 - -1.3 3,246,358 - -1.0 3,246,358 - -0.4 3,246,358 - +1.0 3,246,358 - +0.5 3,246,358 - -0.4 3,246,360 - +1.2 3,246,360 - -0.8 3,246,360 - +0.4 3,246,438 + MIT1002_02921 0.10 -1.0 3,246,438 + MIT1002_02921 0.10 -0.0 3,246,438 - MIT1002_02921 0.10 -2.1 3,246,460 - MIT1002_02921 0.12 -0.6 3,246,460 - MIT1002_02921 0.12 +1.3 3,246,462 + MIT1002_02921 0.12 -0.5 3,246,474 + MIT1002_02921 0.13 -1.1 3,246,482 - MIT1002_02921 0.14 +0.2 3,246,489 + MIT1002_02921 0.15 +0.4 3,246,489 + MIT1002_02921 0.15 +2.5 3,246,489 + MIT1002_02921 0.15 -0.0 3,246,489 + MIT1002_02921 0.15 -0.6 3,246,489 + MIT1002_02921 0.15 +0.4 3,246,489 + MIT1002_02921 0.15 +0.0 3,246,489 + MIT1002_02921 0.15 -0.4 3,246,489 + MIT1002_02921 0.15 -1.0 3,246,489 + MIT1002_02921 0.15 +0.4 3,246,489 + MIT1002_02921 0.15 +1.0 3,246,489 + MIT1002_02921 0.15 +0.9 3,246,489 + MIT1002_02921 0.15 +0.1 3,246,489 + MIT1002_02921 0.15 -0.7 3,246,489 + MIT1002_02921 0.15 -0.2 3,246,489 + MIT1002_02921 0.15 +1.3 3,246,489 + MIT1002_02921 0.15 +0.8 3,246,497 - MIT1002_02921 0.16 +0.8 3,246,497 - MIT1002_02921 0.16 -0.2 3,246,497 - MIT1002_02921 0.16 -1.1 3,246,497 - MIT1002_02921 0.16 +0.9 3,246,497 - MIT1002_02921 0.16 +0.6 3,246,497 - MIT1002_02921 0.16 -1.2 3,246,497 - MIT1002_02921 0.16 -0.7 3,246,497 - MIT1002_02921 0.16 -1.1 3,246,497 - MIT1002_02921 0.16 +0.8 3,246,497 - MIT1002_02921 0.16 +1.0 3,246,497 - MIT1002_02921 0.16 -1.7 3,246,497 - MIT1002_02921 0.16 +0.5 3,246,508 + MIT1002_02921 0.17 -0.1 3,246,516 - MIT1002_02921 0.17 -0.1 3,246,519 - MIT1002_02921 0.18 +0.6 3,246,616 + MIT1002_02921 0.27 -1.5 3,246,647 + MIT1002_02921 0.30 +1.3 3,246,735 - MIT1002_02921 0.38 +1.4 3,246,748 + MIT1002_02921 0.39 -0.2 3,246,757 - MIT1002_02921 0.40 -0.4 3,246,757 - MIT1002_02921 0.40 -2.7 3,246,762 - MIT1002_02921 0.41 -1.3 3,246,764 - MIT1002_02921 0.41 +0.3 3,246,791 + MIT1002_02921 0.43 +0.4 3,246,835 + MIT1002_02921 0.47 +0.0 3,246,843 + MIT1002_02921 0.48 +0.7 3,246,848 + MIT1002_02921 0.49 +0.2 3,246,852 - MIT1002_02921 0.49 -0.9 3,246,921 + MIT1002_02921 0.56 -0.2 3,246,956 - MIT1002_02921 0.59 +1.2 3,247,016 + MIT1002_02921 0.65 -0.5 3,247,016 + MIT1002_02921 0.65 +0.8 3,247,016 + MIT1002_02921 0.65 +0.5 3,247,016 + MIT1002_02921 0.65 -0.0 3,247,016 + MIT1002_02921 0.65 -0.2 3,247,024 - MIT1002_02921 0.65 -1.0 3,247,024 - MIT1002_02921 0.65 -1.5 3,247,024 - MIT1002_02921 0.65 +0.3 3,247,024 - MIT1002_02921 0.65 +0.8 3,247,024 - MIT1002_02921 0.65 +1.3 3,247,051 + MIT1002_02921 0.68 -0.0 3,247,061 - MIT1002_02921 0.69 -0.8 3,247,149 - MIT1002_02921 0.77 +1.4 3,247,182 - MIT1002_02921 0.80 +0.0 3,247,182 - MIT1002_02921 0.80 -0.2 3,247,238 + MIT1002_02921 0.85 -2.5 3,247,271 + MIT1002_02921 0.89 -0.5 3,247,271 + MIT1002_02921 0.89 +0.2 3,247,279 - MIT1002_02921 0.89 +1.9 3,247,279 - MIT1002_02921 0.89 -1.2 3,247,388 - -2.1 3,247,395 + +0.0 3,247,402 + +0.8 3,247,423 + -1.6 3,247,423 + -0.0 3,247,431 - +0.4 3,247,431 - +1.7 3,247,435 + -0.2 3,247,443 - +0.4 3,247,482 + -2.5 3,247,482 + +0.8 3,247,490 - -0.2 3,247,512 - +0.8 3,247,522 + +1.5 3,247,564 + -0.9 3,247,608 - -0.2 3,247,719 - MIT1002_02922 0.13 +1.4 3,247,743 + MIT1002_02922 0.17 -1.0 3,247,757 - MIT1002_02922 0.19 +0.2 3,247,813 + MIT1002_02922 0.29 -0.0 3,247,813 + MIT1002_02922 0.29 +0.5 3,247,813 + MIT1002_02922 0.29 -0.4 3,247,813 + MIT1002_02922 0.29 +1.0 3,247,813 + MIT1002_02922 0.29 -2.0 3,247,829 + MIT1002_02922 0.32 +0.0 3,247,829 + MIT1002_02922 0.32 -3.8 3,247,898 + MIT1002_02922 0.44 +1.1 3,247,906 - MIT1002_02922 0.45 -1.0 3,247,906 - MIT1002_02922 0.45 -1.4 3,247,946 + MIT1002_02922 0.52 -1.6 3,247,981 - MIT1002_02922 0.58 -0.1 3,247,981 - MIT1002_02922 0.58 -0.1 3,247,988 - MIT1002_02922 0.60 -0.8 3,248,094 + MIT1002_02922 0.78 +0.6 3,248,097 - MIT1002_02922 0.78 +0.3 3,248,127 + MIT1002_02922 0.84 -0.9 3,248,135 - MIT1002_02922 0.85 -0.4 3,248,220 + -1.3 3,248,220 + -1.3 3,248,227 - +1.6 3,248,243 + -0.6 3,248,273 + -0.2 3,248,353 + -0.3 3,248,353 + +1.7 3,248,377 + -0.2 3,248,377 + +1.6 3,248,385 - +0.2 3,248,385 - -0.1
Or see this region's nucleotide sequence