Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02860

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 6
3,173,805	-		MIT1002_02859	0.34	+1.3
3,173,810	-		MIT1002_02859	0.35	+0.5
3,173,818	-		MIT1002_02859	0.35	+0.2
3,173,823	-		MIT1002_02859	0.36	+0.0
3,173,864	+		MIT1002_02859	0.38	+0.7
3,173,925	-		MIT1002_02859	0.42	-1.0
3,173,932	-		MIT1002_02859	0.43	+0.0
3,174,091	-		MIT1002_02859	0.53	-1.6
3,174,093	+		MIT1002_02859	0.54	-1.2
3,174,094	-		MIT1002_02859	0.54	+0.2
3,174,152	+		MIT1002_02859	0.58	-0.4
3,174,345	+		MIT1002_02859	0.70	-1.6
3,174,397	-		MIT1002_02859	0.74	+1.1
3,174,404	+		MIT1002_02859	0.74	-0.5
3,174,540	-		MIT1002_02859	0.84	-0.1
3,174,555	+		MIT1002_02859	0.85	+0.4
3,174,555	+		MIT1002_02859	0.85	+0.1
3,174,555	+		MIT1002_02859	0.85	+0.8
3,174,555	+		MIT1002_02859	0.85	+0.1
3,174,555	+		MIT1002_02859	0.85	-0.5
3,174,555	+		MIT1002_02859	0.85	+0.5
3,174,555	+		MIT1002_02859	0.85	+0.3
3,174,563	-		MIT1002_02859	0.85	+1.2
3,174,594	+		MIT1002_02859	0.87	+1.4
3,174,602	-		MIT1002_02859	0.88	-0.9
3,174,602	-		MIT1002_02859	0.88	+0.9
3,174,602	-		MIT1002_02859	0.88	+0.9
3,174,604	+		MIT1002_02859	0.88	-1.5
3,174,604	+		MIT1002_02859	0.88	+1.2
3,174,612	-		MIT1002_02859	0.88	+1.6
3,174,612	-		MIT1002_02859	0.88	+0.8
3,174,649	+				+1.0
3,174,714	-				-0.3
3,174,736	-				+1.1
3,174,809	+				-1.3
3,174,817	+				-1.7
3,174,817	+				-0.7
3,174,817	-				-1.0
3,174,826	-				-0.9
3,174,854	+				-2.1
3,174,881	+		MIT1002_02860	0.10	+1.4
3,174,881	+		MIT1002_02860	0.10	-1.5
3,174,947	+		MIT1002_02860	0.17	+1.4
3,174,955	-		MIT1002_02860	0.18	-2.5
3,174,970	-		MIT1002_02860	0.20	-0.3
3,174,976	-		MIT1002_02860	0.21	+1.0
3,175,052	+		MIT1002_02860	0.29	+0.9
3,175,069	+		MIT1002_02860	0.31	-0.8
3,175,079	-		MIT1002_02860	0.32	+1.3
3,175,115	+		MIT1002_02860	0.36	+0.0
3,175,128	-		MIT1002_02860	0.38	-0.6
3,175,146	+		MIT1002_02860	0.40	+0.2
3,175,156	-		MIT1002_02860	0.41	+1.1
3,175,186	-		MIT1002_02860	0.44	-1.2
3,175,189	-		MIT1002_02860	0.45	+0.2
3,175,190	+		MIT1002_02860	0.45	+0.4
3,175,190	+		MIT1002_02860	0.45	+0.8
3,175,190	+		MIT1002_02860	0.45	-0.4
3,175,190	+		MIT1002_02860	0.45	+0.9
3,175,190	+		MIT1002_02860	0.45	+0.6
3,175,190	+		MIT1002_02860	0.45	-1.4
3,175,191	+		MIT1002_02860	0.45	-2.2
3,175,198	-		MIT1002_02860	0.46	-2.0
3,175,198	-		MIT1002_02860	0.46	-2.2
3,175,198	-		MIT1002_02860	0.46	+0.9
3,175,198	-		MIT1002_02860	0.46	-0.4
3,175,198	-		MIT1002_02860	0.46	-0.1
3,175,198	-		MIT1002_02860	0.46	-0.4
3,175,199	-		MIT1002_02860	0.46	+0.5
3,175,263	-		MIT1002_02860	0.53	-1.5
3,175,287	-		MIT1002_02860	0.56	-0.1
3,175,297	-		MIT1002_02860	0.57	-0.1
3,175,297	-		MIT1002_02860	0.57	-0.9
3,175,313	+		MIT1002_02860	0.58	-0.6
3,175,319	-		MIT1002_02860	0.59	-0.8
3,175,321	-		MIT1002_02860	0.59	-0.8
3,175,321	-		MIT1002_02860	0.59	-1.3
3,175,340	-		MIT1002_02860	0.62	-0.4
3,175,409	+		MIT1002_02860	0.69	-0.2
3,175,417	-		MIT1002_02860	0.70	+0.2
3,175,439	-		MIT1002_02860	0.73	+1.7
3,175,472	-		MIT1002_02860	0.76	-0.6
3,175,489	-		MIT1002_02860	0.78	-0.7
3,175,533	+		MIT1002_02860	0.83	-0.2
3,175,533	+		MIT1002_02860	0.83	-0.5
3,175,533	+		MIT1002_02860	0.83	+0.1
3,175,559	-		MIT1002_02860	0.86	+0.5
3,175,561	-		MIT1002_02860	0.86	+3.1
3,175,583	-		MIT1002_02860	0.89	-0.9
3,175,587	+		MIT1002_02860	0.89	+1.4
3,175,595	-				-1.2
3,175,723	-				-0.1
3,175,723	-				+1.4
3,175,837	-		MIT1002_02861	0.12	+0.8
3,175,858	+		MIT1002_02861	0.14	-0.4
3,175,860	+		MIT1002_02861	0.14	+1.2
3,175,915	+		MIT1002_02861	0.18	-0.5
3,176,010	+		MIT1002_02861	0.25	-0.8
3,176,049	+		MIT1002_02861	0.28	-2.3
3,176,072	+		MIT1002_02861	0.30	+1.9
3,176,072	+		MIT1002_02861	0.30	-0.9
3,176,077	+		MIT1002_02861	0.30	-1.3
3,176,080	-		MIT1002_02861	0.31	+1.0
3,176,080	-		MIT1002_02861	0.31	-0.1
3,176,124	+		MIT1002_02861	0.34	-0.3
3,176,153	+		MIT1002_02861	0.36	-0.5
3,176,153	+		MIT1002_02861	0.36	+0.9
3,176,161	-		MIT1002_02861	0.37	-0.7
3,176,185	+		MIT1002_02861	0.39	-0.0
3,176,188	-		MIT1002_02861	0.39	-0.3
3,176,188	-		MIT1002_02861	0.39	+1.7
3,176,188	-		MIT1002_02861	0.39	-0.9
3,176,380	+		MIT1002_02861	0.53	+1.5
3,176,400	+		MIT1002_02861	0.55	+0.8
3,176,443	+		MIT1002_02861	0.58	+2.9
3,176,451	-		MIT1002_02861	0.59	-1.0
3,176,505	-		MIT1002_02861	0.63	-2.5
3,176,522	-		MIT1002_02861	0.64	+0.4
3,176,586	+		MIT1002_02861	0.69	-2.6
3,176,586	+		MIT1002_02861	0.69	+2.6
3,176,595	-		MIT1002_02861	0.70	-1.6
3,176,604	+		MIT1002_02861	0.70	+0.3
3,176,612	-		MIT1002_02861	0.71	+0.0
3,176,614	+		MIT1002_02861	0.71	-0.3
3,176,614	+		MIT1002_02861	0.71	+1.6
3,176,622	-		MIT1002_02861	0.72	-0.4