Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02571

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 6
2,868,833	+				+1.6
2,868,838	+				+1.5
2,869,000	+				+0.4
2,869,010	-				+1.4
2,869,117	-				-2.6
2,869,174	-		MIT1002_02570	0.15	-2.3
2,869,222	-		MIT1002_02570	0.22	-3.3
2,869,233	+		MIT1002_02570	0.23	-2.0
2,869,279	+		MIT1002_02570	0.30	-0.2
2,869,286	+		MIT1002_02570	0.31	-2.1
2,869,299	-		MIT1002_02570	0.32	-2.0
2,869,459	+		MIT1002_02570	0.54	-2.1
2,869,557	-		MIT1002_02570	0.68	-1.5
2,869,574	+		MIT1002_02570	0.70	-1.3
2,869,584	+		MIT1002_02570	0.72	-1.3
2,869,584	+		MIT1002_02570	0.72	-2.5
2,869,584	+		MIT1002_02570	0.72	-1.6
2,869,584	+		MIT1002_02570	0.72	+1.2
2,869,584	+		MIT1002_02570	0.72	-2.2
2,869,592	-		MIT1002_02570	0.73	-2.6
2,869,592	-		MIT1002_02570	0.73	+0.1
2,869,592	-		MIT1002_02570	0.73	-4.0
2,869,619	+		MIT1002_02570	0.76	-1.3
2,869,619	+		MIT1002_02570	0.76	-5.3
2,869,619	+		MIT1002_02570	0.76	-1.3
2,869,627	-		MIT1002_02570	0.78	-1.4
2,869,627	-		MIT1002_02570	0.78	+0.6
2,869,627	-		MIT1002_02570	0.78	+0.6
2,869,627	-		MIT1002_02570	0.78	-2.0
2,869,679	+		MIT1002_02570	0.85	+0.9
2,869,679	+		MIT1002_02570	0.85	-2.5
2,869,679	+		MIT1002_02570	0.85	-2.9
2,869,679	+		MIT1002_02570	0.85	+0.9
2,869,685	+		MIT1002_02570	0.86	-0.9
2,869,801	+				-0.9
2,869,809	-				-1.5
2,869,809	-				-0.9
2,869,841	+				+0.6
2,869,849	+				+0.9
2,869,849	+				-0.3
2,869,892	+				+0.2
2,869,893	+				-3.6
2,869,901	-				-3.8
2,869,925	+				-6.9
2,870,073	-		MIT1002_02571	0.18	-0.6
2,870,107	-		MIT1002_02571	0.20	-2.7
2,870,114	+		MIT1002_02571	0.21	-1.2
2,870,139	+		MIT1002_02571	0.22	-2.0
2,870,159	+		MIT1002_02571	0.24	-3.9
2,870,159	+		MIT1002_02571	0.24	-4.1
2,870,159	+		MIT1002_02571	0.24	-3.0
2,870,175	+		MIT1002_02571	0.25	-1.1
2,870,399	-		MIT1002_02571	0.40	-4.5
2,870,448	+		MIT1002_02571	0.44	+0.4
2,870,454	+		MIT1002_02571	0.44	-1.5
2,870,456	-		MIT1002_02571	0.44	-2.1
2,870,460	+		MIT1002_02571	0.45	-2.1
2,870,476	+		MIT1002_02571	0.46	-0.9
2,870,537	+		MIT1002_02571	0.50	-1.5
2,870,609	-		MIT1002_02571	0.55	-0.2
2,870,678	-		MIT1002_02571	0.60	-1.7
2,870,686	-		MIT1002_02571	0.60	-2.3
2,870,688	-		MIT1002_02571	0.60	-0.4
2,870,760	-		MIT1002_02571	0.65	-1.4
2,870,760	-		MIT1002_02571	0.65	-1.5
2,870,764	-		MIT1002_02571	0.66	-0.8
2,870,769	-		MIT1002_02571	0.66	+0.2
2,870,769	-		MIT1002_02571	0.66	-2.1
2,870,935	+		MIT1002_02571	0.78	-1.0
2,871,062	-		MIT1002_02571	0.86	-0.8
2,871,076	+		MIT1002_02571	0.87	+0.4
2,871,078	+		MIT1002_02571	0.88	-2.0
2,871,084	-		MIT1002_02571	0.88	-2.6
2,871,086	-		MIT1002_02571	0.88	-0.7
2,871,086	-		MIT1002_02571	0.88	-1.3
2,871,086	-		MIT1002_02571	0.88	-2.7
2,871,137	+				-4.1
2,871,154	+				-2.1
2,871,154	-				-0.6
2,871,258	+				-2.6
2,871,265	-				-0.6
2,871,277	+				-3.3
2,871,277	+				-1.2
2,871,277	+				-0.4
2,871,291	+				-0.8
2,871,299	-				-0.9
2,871,301	-				-0.5
2,871,363	+		MIT1002_02572	0.14	-3.0
2,871,363	+		MIT1002_02572	0.14	-1.4
2,871,366	-		MIT1002_02572	0.15	-2.4
2,871,371	-		MIT1002_02572	0.15	+0.9
2,871,371	-		MIT1002_02572	0.15	+0.9
2,871,371	-		MIT1002_02572	0.15	-0.5
2,871,371	-		MIT1002_02572	0.15	-1.2
2,871,375	+		MIT1002_02572	0.16	+0.1
2,871,417	+		MIT1002_02572	0.22	-1.4
2,871,425	-		MIT1002_02572	0.24	-1.4
2,871,602	-		MIT1002_02572	0.50	-3.4
2,871,671	-		MIT1002_02572	0.61	-2.3
2,871,729	+		MIT1002_02572	0.69	-2.4
2,871,793	+		MIT1002_02572	0.79	-1.4
2,871,801	-		MIT1002_02572	0.80	-1.9
2,871,801	-		MIT1002_02572	0.80	-1.0
2,871,830	+		MIT1002_02572	0.84	-4.5
2,871,830	+		MIT1002_02572	0.84	-2.0
2,871,890	+				-0.5
2,871,903	-				-2.1
2,872,037	+				+0.6
2,872,058	+				-2.3
2,872,089	-				+0.9
2,872,112	+		MIT1002_02573	0.10	+0.4
2,872,114	+		MIT1002_02573	0.10	-2.1
2,872,133	+		MIT1002_02573	0.12	-3.3
2,872,180	+		MIT1002_02573	0.16	-1.5